- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C3.736.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.736.v1.R.ND1-1
Possible name(s)
TUBA1C; TUBA3C; TUBA3D
Gene model
Location
KhC3 [5,588,956 / 5,592,803]
Amino acid sequence
Length: 453
>KH.C3.736.v1.R.ND1-1
VMLKRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG
AGKHVPRAVFVDLEPTVVDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEHVDT
VLDRIRKLSDQCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQI
STAVVEPYNSVLTTHTTLEHSDCAFMVDNEATYDICRRNLDVERPTYTNLNRLIGQIVSS
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSEITNSCFE
PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINY
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE
FSEAREDLAALEKDYEEVGIDSVDEENDEDDEY
Nucleotide sequence
Length: 1,927
>KH2012:KH.C3.736.v1.R.ND1-1
GCCGCCTATAGAGAGCTGTTGTTTGAACTCTAAGTTTTGCTTATTTCAAGTATATTGTTT
AAGTTCCCGAAGATTTTAATTTCAAGATGCCATAGAACGCAGTTCCGCTACAGCCCAAGC
ATGAACCAAAACTCTATTAAACTGGAAATACATGAACTTACGATATATGGGTGTGCCGTC
GTGTGCGTAACAGACATTTACTTTTGTTTGTCGTTAAACGACAACAGTAAGTGATGCTTA
AAAGAGAATGCATTTCAATCCACGTCGGTCAAGCTGGTGTCCAGATGGGCAATGCATGTT
GGGAGTTGTATTGCTTAGAGCACGGCATCCAACCCGATGGTCAGATGCCGAGTGACAAGA
CAATTGGAGGGGGTGACGATTCGTTCAACACCTTTTTCAGTGAGACAGGAGCCGGAAAAC
ATGTTCCAAGAGCAGTTTTTGTCGATCTTGAACCGACTGTTGTTGACGAAATACGTACGG
GAACGTACAGGCAACTGTTTCATCCAGAGCAGTTGATCACCGGCAAAGAAGATGCCGCAA
ACAACTACGCCCGTGGCCACTACACTGTCGGCAAAGAACATGTTGATACTGTCCTTGATC
GCATCCGAAAGCTTTCGGATCAATGCAGTGGCTTGCAGGGATTTTTGATCTTTCATTCGT
TTGGTGGTGGCACTGGATCCGGATTTACGTCGTTGTTAATGGAGAGACTTTCCGTCGATT
ACGGAAAGAAATCAAAGCTGGAATTTGCAATCTACCCAGCACCGCAGATTTCCACCGCCG
TCGTTGAGCCGTACAACTCGGTCCTAACAACGCACACGACCTTGGAGCATTCGGACTGCG
CGTTTATGGTTGACAACGAAGCTACCTACGATATTTGCAGAAGGAATTTGGATGTCGAAA
GACCCACCTACACAAACCTTAACCGGTTGATTGGCCAGATCGTTTCATCCATCACGGCTT
CGCTGCGTTTCGATGGCGCATTAAACGTGGATTTAACGGAGTTCCAAACCAACTTGGTGC
CATACCCACGTATTCACTTTCCATTGGTCACGTATGCTCCAGTCATTTCCGCTGAGAAAG
CTTACCACGAACAATTATCCGTCTCTGAGATCACCAACTCGTGTTTCGAACCAGCCAATC
AGATGGTAAAATGTGACCCACGCCATGGAAAGTACATGGCATGTTGTCTTTTGTACCGCG
GTGATGTTGTCCCGAAGGACGTCAACGCTGCTATTGCTGCAATCAAAACCAAACGAACAA
TTCAGTTCGTCGATTGGTGTCCCACTGGTTTCAAAGTTGGTATCAACTACCAACCACCAA
CCGTTGTACCAGGTGGTGACTTGGCGAAAGTCCAACGTGCGGTTTGTATGTTGAGCAACA
CAACAGCGATTGCCGAGGCTTGGGCTCGTCTGGACCACAAGTTCGACTTGATGTACGCCA
AACGTGCATTCGTTCACTGGTATGTCGGTGAGGGAATGGAAGAAGGAGAATTCTCCGAAG
CTCGCGAGGATCTCGCTGCTCTGGAGAAAGATTATGAAGAAGTCGGCATCGATTCCGTCG
ATGAAGAGAATGACGAAGACGATGAATATTGAACAAACAAGAAGACTTTCGATTTTATGC
TAATTTCAATTCACCTAAACTGTTACACCGGTTTTAAATATAACCCGCTTAAACATTAAA
CAAACTTGACATATTTTGCGGTTTTAAGTCTATTTCAATTTACACAAAGTGTTAAATGTG
TTTTAAATATCGTCTGTTTAACTGATGGTTTGATTTTAACAATAAATGCAATGCTGAATA
ACAAAAGGCAGCCTTTCAAGTAAGAAATTTCTTACTTTTTACTTGGTTTTAATTTACGGG
CCAATATGCTGCGAGGTTTCTCGATAAAACAGTAACAAGAGAGCACCGCTTTAATGAATG
TGCACAT
| Gene3D |
Tubulin/FtsZ_GTPase_sf (IPR036525) - T[4-271] 2.1E-129 |
| SUPERFAMILY |
Tubulin/FtsZ_GTPase_sf (IPR036525) - T[5-247] 4.06E-99 |
| PANTHER |
Tubulin (IPR000217) - T[5-449] 0.0 |
| Pfam |
Tubulin_FtsZ_GTPase (IPR003008) - T[6-216] 4.9E-67 |
| PRINTS |
Tubulin (IPR000217) - T[13-33] 2.3E-88 - T[56-75] 2.3E-88 - T[98-109] 2.3E-88 - T[111-135] 2.3E-88 - T[137-155] 2.3E-88 - T[156-177] 2.3E-88 - T[181-194] 2.3E-88 - T[195-215] 2.3E-88 - T[383-411] 2.3E-88 |
| PRINTS |
Alpha_tubulin (IPR002452) - T[21-36] 1.4E-119 - T[48-61] 1.4E-119 - T[91-104] 1.4E-119 - T[123-131] 1.4E-119 - T[151-163] 1.4E-119 - T[164-175] 1.4E-119 - T[217-229] 1.4E-119 - T[277-292] 1.4E-119 - T[324-345] 1.4E-119 - T[350-363] 1.4E-119 - T[363-382] 1.4E-119 - T[388-404] 1.4E-119 - T[425-441] 1.4E-119 |
| SMART |
Tubulin_FtsZ_GTPase (IPR003008) - T[52-249] 4.9E-81 |
| ProSitePatterns |
Tubulin_CS (IPR017975) - T[145-151] . |
| SUPERFAMILY |
Tub_FtsZ_C (IPR008280) - T[249-439] 6.41E-87 |
| SMART |
Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[251-396] 1.2E-58 |
| Pfam |
Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[266-394] 2.1E-51 |
| Gene3D |
Tubulin/FtsZ_C_sf (IPR037103) - T[272-386] 1.1E-67 |
| Gene3D |
Tubulin_C (IPR023123) - T[387-440] 3.1E-34 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBA3C_HUMAN | 95.672 % | 870 | 0 |
| TBA3D_HUMAN | 95.672 % | 870 | 0 |
| TBA1C_HUMAN | 93.541 % | 868 | 0 |