- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C3.751.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.751.v1.C.SL1-1
Possible name(s)
SNAI1; SNAI2; SNAI3
Gene model
Location
KhC3 [5,679,283 / 5,682,504]
Amino acid sequence
Length: 605
>KH.C3.751.v1.C.SL1-1
TFGTYSKYQNSHCEIYYCDYIMTSVEPMLYQGKHAVQKNEGESTRPCTLSGDDSFYCSGE
STNSTSSPTSSITSSRSCGPDSDEGFPRQDDLDLRDKASKNLQHSVELFCPIKSKSVDHD
NDLMPMDLSCKKRTFPKQNCKTASMPKTSPTIKSEPIDDYPASLTRNAPPSSMPSVSPPS
SNITREFPPSMFPSWPYFSTPITSSVGGFPSFPSSYIPGKYLHPALFLPPPATSCQTVPT
NSPLGFSVGNSMLPGLHQLAASHFQPSMIKPVAQPQGVPQEQNSLNHDDQKFAQNSPQPR
FSPTNLVQDPSLLAEFARVFSRQVEQFRPKPGFEENNTKNQNSERRRKNAKPLKISADVS
PPQPQLNDMRSISFKDLPTMVSQTHDHNAFYGAQKNRQELKRKSSGEDNSESPSGKKVCL
DSKTTWRQIDAPAFQISDAIEEQNKTPQPVSFKPCRIPCTECGRTYATIGALAKHAKTHE
DPESGSKFNCKICKKECSSLGALRMHIRTHTLPCECHICGKAFSRTWLLQGHIRTHTGEK
PYQCTVCSRAFADRSNLRAHMQTHETVKRYSCVTCEKTFSRISLLKRHQVHCETASQTAQ
RKTAS
Nucleotide sequence
Length: 2,044
>KH2012:KH.C3.751.v1.C.SL1-1
ACTTTTGGTACATATTCAAAATATCAAAATTCTCACTGTGAAATATATTACTGTGATTAC
ATCATGACCTCCGTCGAGCCCATGCTTTATCAAGGCAAGCACGCCGTTCAGAAAAATGAA
GGCGAATCTACCCGTCCTTGCACTTTGAGTGGAGATGACAGTTTTTACTGCAGCGGCGAA
TCAACAAATTCGACGTCATCTCCCACGTCATCCATTACGTCATCGCGTTCATGTGGACCT
GACAGCGACGAAGGTTTTCCGAGACAGGATGACCTGGATTTGCGTGACAAAGCCAGCAAA
AACTTGCAACATAGCGTTGAGCTTTTTTGCCCTATTAAGAGCAAGTCAGTTGATCATGAT
AACGATTTAATGCCTATGGATCTCTCGTGCAAAAAGAGAACTTTCCCAAAACAAAATTGC
AAAACTGCTAGCATGCCTAAAACGAGCCCAACCATAAAATCAGAACCGATTGATGACTAT
CCAGCTTCACTTACACGCAACGCTCCACCTTCAAGTATGCCTTCCGTTTCACCCCCTTCA
TCAAACATCACACGAGAATTTCCACCCTCTATGTTTCCATCATGGCCTTATTTTTCCACT
CCAATAACTTCAAGCGTTGGTGGATTTCCGTCTTTTCCGTCGTCCTATATTCCTGGAAAA
TATCTTCATCCAGCGTTATTCCTTCCACCACCAGCGACGTCTTGCCAAACCGTCCCAACC
AACAGCCCTCTCGGTTTTTCTGTAGGAAATTCCATGCTGCCAGGACTTCACCAGCTCGCA
GCTAGCCATTTCCAACCATCAATGATCAAACCAGTTGCTCAGCCACAGGGTGTACCGCAA
GAGCAGAATTCGCTCAATCACGATGACCAGAAGTTCGCTCAAAATTCCCCACAGCCTCGG
TTTTCCCCGACCAACCTGGTCCAAGACCCTTCTCTGTTAGCTGAGTTTGCACGGGTTTTC
AGCCGACAAGTCGAACAGTTCCGCCCAAAACCAGGTTTCGAGGAAAACAACACGAAGAAT
CAAAACTCAGAGCGTCGCCGCAAAAATGCGAAACCGTTGAAGATTTCCGCTGATGTATCG
CCACCACAACCTCAACTTAACGACATGCGATCAATTTCGTTTAAAGATTTACCCACCATG
GTTTCTCAAACTCACGACCACAACGCCTTCTACGGAGCGCAGAAAAACCGACAGGAACTG
AAGAGAAAATCCTCTGGCGAAGATAATTCTGAAAGTCCATCTGGAAAAAAGGTATGCTTG
GATTCCAAAACTACTTGGAGGCAAATTGACGCACCGGCGTTTCAGATATCTGATGCAATT
GAAGAACAAAATAAAACTCCGCAGCCTGTCAGTTTTAAACCATGTCGTATTCCATGTACT
GAATGTGGAAGAACGTACGCGACCATCGGTGCCCTCGCTAAACACGCCAAAACACACGAG
GACCCGGAATCTGGTAGCAAATTCAATTGCAAAATATGCAAGAAAGAGTGCAGTTCTCTT
GGAGCACTTCGAATGCACATCCGCACCCATACGCTTCCGTGCGAATGCCATATTTGTGGT
AAAGCGTTCTCACGTACCTGGCTGTTGCAGGGACACATACGCACACATACCGGTGAGAAA
CCATACCAATGCACTGTGTGCTCTAGGGCTTTCGCCGACCGATCAAACCTTCGTGCTCAT
ATGCAAACTCACGAAACTGTTAAACGATACAGCTGTGTTACCTGCGAGAAAACGTTCTCT
CGGATTTCGTTGCTAAAACGTCACCAAGTACATTGTGAAACAGCCTCACAAACTGCACAA
CGCAAGACAGCATCCTAAAAGTCTATATCGGACATCAACTGTACATATACACCGCAAACT
TGGTTGAATATTTATTTTGTTTGTGCCATATTGTTTAGATACATTGTAGTTCAATCCTTG
TGCGAATAACCCATGTTACCTCGCTGTAAGTATTCAAGGTGCCCCCGATTTGCTGTTCTT
AATATTTTGCACACGTTTGCTGATTAACGCTCCCGCGGTATTGAATAAAAACGCACTTTG
AAAA
| SMART |
Znf_C2H2_type (IPR013087) - T[457-479] 0.027 - T[488-510] 0.0012 - T[514-536] 0.05 - T[542-564] 3.5E-5 - T[570-591] 7.7 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[457-484] 10.824 - T[488-511] 9.452 - T[514-541] 15.002 - T[542-569] 12.819 - T[570-602] 10.055 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[458-510] 3.96E-8 - T[513-564] 5.41E-17 - T[555-590] 3.19E-7 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[459-479] . - T[490-510] . - T[514-536] . - T[544-564] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNAI1_HUMAN | 69.091 % | 171 | 6.43E-49 |
| SNAI3_HUMAN | 65.649 % | 186 | 1.73E-54 |
| SNAI2_HUMAN | 61.29 % | 197 | 8.13E-59 |