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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L153.32.v1...' > 
  2. Transcript 'KH2012:KH.L153.32.v3...' > 
  3. Molecular Tool 'cicl41b08-MO (Hamada's MO)' > 
  4. Transcript 'KH2012:KH.C3.781.v1....'

Transcript Model

Transcript Id

KH2012:KH.C3.781.v1.A.SL1-2

Possible name(s)

DES; GFAP; VIM

Gene model

KH2012:KH.C3.781

Location

KhC3 [5,307,356 / 5,311,308]

Sequences

Amino acid sequence

Length: 461

>KH.C3.781.v1.A.SL1-2
FYDPGNFFSDKMQSPAGQSGQSSSYRVVTSSRTTTSSSNNAAGSPLRLGDIQPQGRMSYG
MYSSSYDGGYSGGVGSVYVSDKDLQDLGGEQGVQFRNMRSGEKEELKGLNNRFASYIERV
RFLEQQNKLLEAQLRQLSVKYESKLGELYASEVRRLKAIIDSLNTDKALIDAELDHMRQD
VTDLRREHDTSVSEREELERELNNLRGNVDECTISRVDLERQLMTLREELDFENLAHTEI
VNELKSQLVTDHVRVQVDTHGPDLSDLLRDIRAQYDLAAKRNREESEEWYSGKLNDLNAK
VSQDANRLKDAQGELSEMRTRVGTHTTQIESLRSNKDYLERQLADVEERFSRDINGYQDQ
IAELQSQLEKIKAEMAERLREYQDLLAVKLGLDFEISTYHKLLEGEEFRLQGVSPGLSSG
GTTYSLRKVVEEYESAYKNVSGPNEYGSFQTCLPKVFKYSD

Nucleotide sequence

Length: 1,666

>KH2012:KH.C3.781.v1.A.SL1-2
AAAATCACCAGACCCGCCCAAGGTAGCTTTTAAACTTAGTTTTACGACCCCGGCAACTTT
TTCTCGGACAAGATGCAGTCACCGGCAGGACAAAGTGGACAGTCGTCTTCATACAGAGTT
GTGACTTCATCGCGAACAACAACTAGCTCTTCCAACAACGCTGCAGGTTCTCCACTTCGA
CTCGGCGATATTCAACCCCAAGGAAGAATGTCTTACGGTATGTACTCATCAAGTTACGAT
GGCGGATACAGCGGAGGTGTAGGATCAGTGTATGTAAGTGATAAGGACTTGCAAGATCTT
GGTGGTGAACAAGGCGTTCAGTTTAGAAACATGAGATCTGGAGAGAAAGAAGAACTCAAG
GGCTTGAACAACCGATTCGCATCCTACATCGAGCGAGTTCGTTTCCTTGAACAACAGAAC
AAGTTGCTCGAGGCTCAGCTTCGTCAGCTTTCCGTGAAATACGAATCTAAGCTGGGAGAG
CTTTATGCCAGTGAGGTTCGTCGCTTGAAGGCCATCATCGACTCGTTGAACACTGACAAG
GCACTCATTGATGCTGAACTTGATCATATGAGACAGGATGTTACTGATTTGAGAAGAGAG
CACGACACGTCAGTAAGTGAACGTGAAGAACTTGAAAGGGAATTAAACAATTTGAGAGGA
AATGTTGACGAATGTACGATCAGCCGTGTGGATTTGGAGAGACAGCTCATGACGTTGAGA
GAAGAACTTGACTTCGAAAACCTTGCCCACACTGAGATCGTGAACGAACTCAAGTCCCAA
CTGGTCACCGACCACGTAAGAGTCCAAGTAGATACTCATGGACCTGACCTATCCGATCTC
CTCCGTGACATTAGAGCACAATACGACCTCGCTGCGAAACGAAACAGAGAAGAGTCGGAA
GAATGGTACAGTGGAAAGTTGAACGACCTGAACGCTAAGGTTTCCCAAGATGCCAACCGT
CTTAAAGACGCACAGGGAGAACTGAGCGAAATGAGAACCCGCGTCGGCACACACACCACG
CAAATTGAGTCCCTTCGTTCCAACAAAGATTACCTGGAGAGACAACTCGCTGACGTGGAA
GAAAGATTCAGTCGCGACATAAATGGTTACCAAGATCAAATCGCAGAACTCCAGTCTCAG
TTGGAGAAGATCAAAGCCGAGATGGCGGAGAGACTTCGAGAATACCAAGACCTGCTGGCG
GTTAAACTAGGTTTGGACTTCGAAATCAGCACATACCACAAACTGCTGGAAGGCGAGGAG
TTCAGACTGCAGGGGGTGTCGCCTGGTTTGAGCAGTGGTGGAACAACCTACTCGCTCAGA
AAAGTCGTCGAAGAATACGAGAGTGCATACAAAAACGTAAGTGGACCAAACGAATATGGC
AGTTTCCAAACATGCTTGCCAAAAGTTTTCAAATATTCTGATTAAGTTTATTGGTCATAG
TGGTAAGTAGGGTGGGAGAGATGGGACATATTTCAATCTTTTTTCTCGTCCCATTTGGTA
GTAAAATATTCTCACGACTTCCATAGATCGACGTTAAAACAAGATCAGGATATTTGGATA
CTTTTTGCTAAAGATGTCTCATTTTACCCCACAGTACTATATAAAATTTGTCTTAGATAA
TGTCACTTAATAGCATTTGTACAAACTATAACTAATAACGATCGAT

InterProScan

PANTHER
IF (IPR001664) - T[30-422] 1.0E-102
SMART
IF (IPR001664) - T[101-409] 3.2E-115
Pfam
IF (IPR001664) - T[102-409] 3.3E-89
PRINTS
Keratin_I (IPR002957) - T[198-221] 5.1E-7 - T[350-376] 5.1E-7
ProSitePatterns
Intermediate_filament_CS (IPR018039) - T[396-404] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VIME_HUMAN 40.482 % 285 1.1E-91
GFAP_HUMAN 42.901 % 249 5.39E-78
DESM_HUMAN 42.587 % 231 1.27E-70