- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.C3.818.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.818.v1.A.SL2-1
Possible name(s)
ZNF407; ZNF544; ZSCAN10
Gene model
Location
KhC3 [5,409,602 / 5,417,335]
Amino acid sequence
Length: 656
>KH.C3.818.v1.A.SL2-1
HFVVTCLWLSMEGDEIQRLMRYEESVNPLPELADIFLPHEGFCGIDALQKESDLHNFSIP
DCLLQYTQLDHPDATDLVHVAKHVVGNDHIVGVHPSSVQESNPLPSAASVVKSADYRDKT
ADVKHKTIQQKLNETKKVLFNSSSSLDTSDCGKSKSSPATDTKLQDVTDGKVVGVCGVCR
FTYSTYKEKQAHMKGSDHICKREALSGTNFKMLADETELLKAVENLPQPCSVCKKPLPSL
QEFLVHHRKHSGKIPFVCIRCKSSFAKRSDLIYHIKKHLGVNNFMCPRCPQSFRQQSRLT
SHMIAQHGVKDTRPRNFNCTECNESFMTKSAVNMHMQSHTGYRPIICTECGHGFRSNNAL
AAHQRVHTGEKPFKCDMCTFSTKTKQLLSRHIRKHTGEKPYKCEHCTFSTACSAGLKRHI
LQHTGSKPFRCPYCSYRSSNIENLRKHIKNTTKHTGLKIYPCHHCDFSCDQGSDYLKHMK
QHFPYLDVDSESATKLAGILVSEQNDELEKSLAKPHTAYTNSEIPLSSCKDEDVEMMVTT
MKEDQNKTRGETSNLAELDAEFLNALIKIPNLQRIILPQDSSNGPVTLVIGSDQPINEVF
QEGTNISSEVLNPTTKVQSTGFQKPFHLSATTLNGLSSAPSEADHFLLPNETSSCV
Nucleotide sequence
Length: 2,077
>KH2012:KH.C3.818.v1.A.SL2-1
CATAGATTTGTTTATTGTAAATGAAATAACATTTTGTTGTGACTTGCTTATGGTTATCTA
TGGAGGGTGACGAGATTCAAAGGTTAATGAGGTACGAAGAATCTGTGAATCCTCTTCCGG
AGCTAGCTGACATCTTCCTCCCACATGAAGGATTTTGTGGAATTGATGCTTTGCAGAAGG
AATCAGATCTACACAACTTCAGTATACCTGATTGCCTCCTTCAGTATACGCAGTTAGACC
ATCCTGATGCAACTGATTTGGTTCATGTCGCAAAACATGTTGTTGGCAACGACCACATCG
TTGGTGTTCACCCATCATCAGTTCAAGAGAGCAATCCATTACCTTCTGCTGCATCAGTGG
TGAAATCAGCAGACTATAGAGATAAAACTGCCGATGTCAAGCATAAAACAATCCAACAAA
AGTTAAACGAGACAAAAAAGGTTTTGTTTAATTCCTCTTCATCATTGGACACAAGTGACT
GTGGAAAGTCCAAATCCTCACCAGCCACAGACACAAAGCTACAAGATGTAACAGATGGAA
AAGTTGTTGGTGTTTGTGGTGTTTGTCGTTTTACTTATTCAACTTACAAAGAGAAGCAAG
CACATATGAAGGGGTCCGACCACATATGCAAACGAGAGGCACTTTCTGGGACCAATTTTA
AAATGCTTGCTGATGAAACAGAACTACTAAAAGCAGTTGAAAACTTGCCGCAACCTTGTT
CTGTTTGTAAGAAGCCACTTCCATCATTGCAAGAGTTTTTAGTCCACCATAGAAAACACA
GCGGAAAAATTCCATTTGTTTGCATTCGATGCAAATCATCGTTTGCTAAACGTTCTGATC
TTATTTATCACATCAAGAAACACCTTGGTGTGAACAACTTTATGTGTCCTCGATGTCCAC
AGTCGTTCCGTCAACAATCCCGACTGACATCACATATGATTGCGCAACATGGAGTGAAAG
ATACACGGCCACGCAACTTTAATTGCACTGAATGCAATGAATCCTTCATGACCAAAAGTG
CAGTGAACATGCATATGCAGTCACATACAGGTTATCGACCAATCATATGCACAGAATGTG
GTCATGGTTTTCGTTCCAATAATGCTCTTGCTGCCCATCAAAGAGTACATACAGGTGAAA
AACCCTTCAAATGTGACATGTGTACGTTTTCAACCAAAACCAAACAACTACTTTCAAGAC
ACATTCGTAAACACACCGGTGAGAAGCCGTACAAATGCGAACATTGTACGTTCTCCACTG
CGTGTTCTGCTGGTCTGAAACGTCACATCTTACAACACACTGGCTCAAAACCTTTCAGAT
GCCCCTACTGTTCATACAGGAGTTCAAATATTGAAAACTTGCGAAAACACATAAAAAATA
CGACGAAACACACTGGTTTGAAGATATACCCTTGTCACCACTGTGACTTCTCTTGTGATC
AAGGAAGTGATTATTTGAAGCACATGAAACAGCACTTTCCATACCTCGATGTTGATTCAG
AATCAGCCACTAAACTTGCTGGTATCTTGGTTTCCGAACAAAATGATGAACTTGAGAAAT
CTCTTGCCAAACCACACACTGCATACACAAACTCTGAGATCCCGTTATCCTCCTGCAAAG
ATGAGGATGTTGAAATGATGGTGACTACGATGAAAGAGGATCAGAACAAAACTCGTGGGG
AGACGAGCAACCTTGCTGAGCTGGATGCAGAGTTTTTGAATGCTCTCATAAAAATTCCCA
ATTTACAGCGTATCATATTACCTCAGGATAGTAGCAACGGACCAGTTACATTGGTTATAG
GAAGCGACCAACCAATCAATGAAGTTTTCCAAGAAGGTACGAATATTTCAAGTGAAGTTT
TAAATCCTACAACCAAAGTGCAATCTACTGGATTCCAAAAACCATTTCACCTCAGTGCAA
CTACTTTAAATGGGCTCTCTAGCGCCCCCAGCGAAGCTGACCACTTTCTCCTGCCAAATG
AGACGTCATCTTGCGTATAGTTTTTGTTGTTGTCGAATCTTGTACTGTAGTTTAAATAAA
ATATATTGAAATCAAATAAAAAACGCACTGTCGTAAA
| SMART |
Znf_C2H2_type (IPR013087) - T[174-198] 5.9 - T[228-250] 2.2 - T[256-278] 0.088 - T[284-307] 0.0054 - T[317-339] 0.0012 - T[345-367] 0.014 - T[373-395] 0.0042 - T[401-423] 0.13 - T[429-454] 0.016 - T[460-482] 0.057 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[228-255] 9.182 - T[256-283] 10.492 - T[284-312] 10.014 - T[317-344] 14.129 - T[345-372] 15.791 - T[373-400] 12.986 - T[401-428] 11.51 - T[429-459] 9.764 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[230-250] . - T[258-278] . - T[286-307] . - T[319-339] . - T[347-367] . - T[462-482] . |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[250-302] 3.64E-11 - T[315-367] 7.56E-14 - T[354-407] 2.47E-17 - T[395-447] 5.43E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZN544_HUMAN | 38.281 % | 176 | 8.82E-47 |
| ZN407_HUMAN | 35.638 % | 235 | 7.9E-66 |
| ZSC10_HUMAN | 36.68 % | 174 | 2.84E-46 |