Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C3.82.v2.A.SL2-1

Possible name(s)

MAP1LC3A; MAP1LC3B; MAP1LC3B2

Gene model

KH2012:KH.C3.82

Location

KhC3 [780,007 / 781,947]

Sequences

Amino acid sequence

Length: 123

>KH.C3.82.v2.A.SL2-1
SKMPGDRTFKQRRSFEDRVKDVSEIRKEHPNKIPVIIERYQGEKQLPVLDKTKFLVPDHV
SMCDLVRIIRRRLQLSPSQAFFLLVNGHSMVSVSDAVSEIYSEQQDEDGFLYMTYASQET
FGT

Nucleotide sequence

Length: 698

>KH2012:KH.C3.82.v2.A.SL2-1
AAAACACTGTTAAGGTCAATTTATATTGTGACGTCATAAGCAGATAAAGCAAGATGCCCG
GAGACCGAACTTTCAAACAAAGACGAAGCTTCGAGGACCGAGTAAAAGATGTGAGTGAAA
TACGGAAGGAACATCCAAATAAAATACCAGTTATTATTGAGAGATACCAAGGAGAGAAAC
AGTTGCCGGTGTTGGACAAAACCAAGTTCCTGGTCCCTGATCATGTTTCTATGTGTGACC
TTGTGAGAATTATTAGACGGAGATTACAACTGAGTCCAAGCCAAGCCTTTTTCCTTCTCG
TTAACGGGCATAGCATGGTTAGTGTATCAGACGCAGTGTCAGAAATATACAGCGAACAAC
AAGATGAAGACGGTTTCTTATACATGACATACGCCTCACAAGAAACCTTTGGTACCTAAA
CTGTAAAAAAGTTTAAAAATTCAAAAACTGCCAACAAAAACAACGCAAACTCATACTTGT
AAAGCTAAAATGTAAAAAAATAGCTAGTAGTGTGTGTTTGTGTATTATGTTATAACCGGT
ATTAACACAAACATTGAAAACAAAAAATGTTTAGTAATCAGTACAATGTAGCCTGGGGTT
ATATGATGATTGTTTTGTTAATTACATGTACTGGATGTGTATAACATTTTCTTTCTCGCA
TGAAATATCTTGTACATAATATATACATACTTGGTAAT

InterProScan

PANTHER	Atg8-like (IPR004241) - T[3-122] 7.8E-64
SUPERFAMILY	Ubiquitin-like_domsf (IPR029071) - T[8-122] 3.88E-41
CDD	Atg8-like (IPR004241) - T[9-122] 1.00597E-55
Pfam	Atg8-like (IPR004241) - T[18-122] 1.2E-41

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
MLP3B_HUMAN	75.833 %	199	8.85E-68
MLP3A_HUMAN	76.667 %	199	1.64E-67
MP3B2_HUMAN	75 %	196	2.59E-66