Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 502

>KH.C3.84.v1.A.ND1-1
PNKETIAALQVGHHRFCIKDSPTSLHGNGPDIGAFTYGMPHPMSPAHPMNPSPTADVPIH
PISPESVGMPGGLINGHGSDHESNTSMVGEGDGVRTFCAICGDRATGKHYGASSCDGCKG
FFRRSVRKNHQYQCRFSRNCTVDKDKRNQCRYCRLRKCFRAGMKREAVQNERDRISTKKS
TIDDSASLSVTTLLNADTMSKQPSAGSAGDVTDTVSIENKKIASVNDVCDSIRQQLLVLV
EWAKYIPAFSELPLDDQVALLRAHAGENLLMGAAKRSLPYKDVLLLGNDFIIPRHCPEVE
ITRVAVRVLDELVRPLADLSLDANEFACLKAIVFFDPDARGLNNPTKIKQMRSQVMCNLE
DYINDRQYDSRGRFGEILLLLPTLQSITWQMIEQIQFVRIFGVARVDNLLQEMLLGSANE
AQASMIPASAAQCGAMGPGSPTHISLANGMVPCSPGLMTMGEKPPNMSPTTPISPSMPQN
MGQPIGMEIDSHVLLQPKSEIL

Nucleotide sequence

Length: 2,450

>KH2012:KH.C3.84.v1.A.ND1-1
ACACATTTGTAAACAATTGTTTTTGTTGTCTGACCTAATAAAGAAACAATAGCTGCATTA
CAAGTTGGACATCATCGTTTCTGTATTAAAGATTCTCCAACCTCTTTGCATGGAAATGGG
CCTGACATCGGCGCCTTCACCTACGGAATGCCACACCCCATGAGCCCCGCTCACCCAATG
AACCCCAGTCCAACAGCAGACGTTCCAATACATCCAATCTCCCCGGAGTCAGTTGGTATG
CCCGGGGGTTTGATCAATGGGCATGGGAGTGACCATGAGTCTAATACTTCGATGGTGGGA
GAAGGAGATGGCGTGAGGACATTTTGTGCAATCTGCGGCGACCGGGCAACAGGCAAGCAT
TACGGTGCGAGCAGCTGTGATGGCTGTAAAGGATTTTTTCGCCGAAGTGTGAGAAAGAAT
CACCAGTACCAGTGTCGATTCAGTCGAAATTGCACTGTGGACAAAGACAAGCGAAACCAA
TGTCGTTATTGCCGACTAAGAAAATGTTTTCGAGCTGGAATGAAAAGAGAAGCCGTTCAA
AACGAACGCGACAGAATAAGCACAAAGAAATCAACCATTGACGATTCTGCTTCGTTGTCG
GTTACAACACTGTTAAATGCGGATACCATGTCGAAACAGCCCTCTGCAGGTTCAGCGGGT
GATGTCACTGATACTGTATCCATTGAGAATAAGAAGATAGCATCAGTAAACGACGTTTGT
GATTCCATAAGGCAGCAACTCCTAGTGTTGGTGGAATGGGCAAAATATATCCCAGCCTTT
TCAGAACTTCCTTTAGATGACCAGGTGGCATTGTTGCGTGCACACGCAGGTGAGAACTTG
TTGATGGGCGCAGCCAAGCGATCATTGCCATATAAAGATGTACTTCTTCTTGGTAATGAC
TTCATTATTCCAAGGCATTGCCCTGAGGTTGAAATCACAAGAGTTGCGGTTCGTGTCCTG
GATGAGTTGGTACGACCTCTCGCGGATCTCTCCTTGGATGCAAATGAGTTTGCTTGTCTT
AAAGCAATTGTCTTTTTTGATCCAGATGCTCGTGGCTTGAACAACCCGACAAAAATCAAG
CAAATGAGATCCCAGGTTATGTGTAACCTTGAAGATTATATCAATGACAGACAATATGAT
TCTCGTGGCAGATTTGGTGAAATACTTCTTCTACTGCCAACCTTACAAAGCATAACTTGG
CAGATGATCGAACAAATCCAGTTCGTTCGAATTTTCGGCGTTGCAAGGGTGGACAACCTT
CTACAAGAGATGTTGCTTGGAAGTGCAAATGAAGCTCAAGCAAGCATGATTCCTGCATCA
GCTGCACAATGCGGTGCAATGGGACCTGGGAGCCCAACTCATATCTCCTTGGCTAACGGC
ATGGTCCCATGCTCACCTGGCCTTATGACAATGGGTGAGAAGCCACCGAACATGTCACCT
ACCACTCCTATCTCACCTTCCATGCCACAAAACATGGGACAACCCATTGGTATGGAGATT
GACAGCCACGTGCTTCTGCAACCAAAGTCTGAGATTTTATGAGCTATGCAAATATGCAGA
TGTGCAAATGACACCAACAACTCCAATGCGGCGTTATGCATTCGCACAGTGTTACTGACT
TTAAAGCGTCTCTGTTAATTTTGCTCTAGCTGTATCCACAACCGCTATCACGCAATTATT
CTTTTTAAAGTTGAAAAACTACAGCTGCACAAGGTTGAACTGGCTCGTTGATTGAATAAT
TTCTTTCATTATTTTGTACATGTATCACTACCTTCTTTATTCTCAACTCTTTAGCTACTG
TCTGACAATTACTAAGTAGCTACTCTATTGGCTGATACTCCCAAGAATATGTGGAGTTAA
TGCAACAAAGTCTCATTCACCGCTATGCACTAATGTTGATGGGATAGCGATACGACTACA
AAGAAGTCCTTGTCCTTTTCAAAGTTTCTTTTGTGTTAAGTTGTTTTTATAAGTTAAATC
ATGTATCGTGCCTGAGAGTCACTTTTATCTTTTCGTCTTATAAGAATAATTGAAATGTTG
CCAATGTTTGCTTGTACACCCTATCCACTTCTGAGCTTGCCAAACCCCTCCCAGCTCCGT
TGTTACCACGAGGTTTGTGGTTTAATGAGGTAAGCTAACTTTTACCCTGTTGATTTGACC
AAGCAATATACTCGCACTAAAAAAACTGTTGTTTGTGACAATATTATGGTGCTACTGTTC
TTCTTGTAATGTCAAAGTTAATAAGGATTTTAAATTCAATAAGATAGTACACCTGGAATG
AAACTTTGCTTCATACGTAAAGCGATAGTTTTGTGTTTTACACAGAAGCCCGGATTTCAT
ATTGAGTGTTGAATCTCTATTGTGTAATTACATAAGTCTTCTTTTAACATGTATTCAACT
TGTGTTCATTCCACTTCATTTCCGCAAAATTGAAATCCTGCAACTATTTC

InterProScan

Gene3D	Znf_NHR/GATA (IPR013088) - T[90-178] 2.5E-33
SMART	Znf_hrmn_rcpt (IPR001628) - T[95-166] 7.8E-38
ProSiteProfiles	Znf_hrmn_rcpt (IPR001628) - T[95-170] 21.147
Pfam	Znf_hrmn_rcpt (IPR001628) - T[97-165] 2.4E-29
ProSitePatterns	Znf_hrmn_rcpt (IPR001628) - T[98-124] .
PRINTS	Znf_hrmn_rcpt (IPR001628) - T[98-114] 4.2E-18 - T[114-129] 4.2E-18 - T[147-155] 4.2E-18 - T[155-163] 4.2E-18
PRINTS	Nuclear_hrmn_rcpt (IPR001723) - T[159-169] 2.5E-25 - T[231-252] 2.5E-25 - T[252-268] 2.5E-25 - T[319-334] 2.5E-25 - T[376-393] 2.5E-25
PRINTS	Retinoid-X_rcpt/HNF4 (IPR000003) - T[166-179] 3.7E-6 - T[307-325] 3.7E-6 - T[348-367] 3.7E-6
SUPERFAMILY	NHR_like_dom_sf (IPR035500) - T[189-415] 4.85E-62
Pfam	Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[217-401] 4.3E-38
SMART	Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[230-388] 3.1E-45