- Clone 'mae8b01' >
- Transcript 'KH2012:KH.C3.84.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C3.84.v2.A.ND2-1
Possible name(s)
HNF4A; HNF4G; RXRA
Gene model
Location
KhC3 [2,554,856 / 2,564,173]
Amino acid sequence
Length: 527
>KH.C3.84.v2.A.ND2-1
SRSLKPRPHTYQSCKMMDADMHSNYGLDAVNPDQLYQDMIPSLQDSPTSLHGNGPDIGAF
TYGMPHPMSPAHPMNPSPTADVPIHPISPESVGMPGGLINGHGSDHESNTSMVGEGDGVR
TFCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYQCRFSRNCTVDKDKRNQCRYCRL
RKCFRAGMKREAVQNERDRISTKKSTIDDSASLSVTTLLNADTMSKQPSAGSAGDVTDTV
SIENKKIASVNDVCDSIRQQLLVLVEWAKYIPAFSELPLDDQVALLRAHAGENLLMGAAK
RSLPYKDVLLLGNDFIIPRHCPEVEITRVAVRVLDELVRPLADLSLDANEFACLKAIVFF
DPDARGLNNPTKIKQMRSQVMCNLEDYINDRQYDSRGRFGEILLLLPTLQSITWQMIEQI
QFVRIFGVARVDNLLQEMLLGSANEAQASMIPASAAQCGAMGPGSPTHISLANGMVPCSP
GLMTMGEKPPNMSPTTPISPSMPQNMGQPIGMEIDSHVLLQPKSEIL
Nucleotide sequence
Length: 2,605
>KH2012:KH.C3.84.v2.A.ND2-1
ATTATTGTTCTGATTTATACTTAATGTGGATTCTATTGTCCAATTGGAAGTGTTGATATC
TGAAGCTTACCAGTGGACGCGGTCCATCACTGTATGTGCGTGTGTGTGTGTAAAGTCGTT
CATTGAAGCCAAGACCCCATACATACCAAAGCTGTAAAATGATGGACGCCGACATGCACT
CTAATTATGGTTTAGACGCTGTCAACCCCGATCAGCTTTATCAAGATATGATACCAAGTC
TTCAAGATTCTCCAACCTCTTTGCATGGAAATGGGCCTGACATCGGCGCCTTCACCTACG
GAATGCCACACCCCATGAGCCCCGCTCACCCAATGAACCCCAGTCCAACAGCAGACGTTC
CAATACATCCAATCTCCCCGGAGTCAGTTGGTATGCCCGGGGGTTTGATCAATGGGCATG
GGAGTGACCATGAGTCTAATACTTCGATGGTGGGAGAAGGAGATGGCGTGAGGACATTTT
GTGCAATCTGCGGCGACCGGGCAACAGGCAAGCATTACGGTGCGAGCAGCTGTGATGGCT
GTAAAGGATTTTTTCGCCGAAGTGTGAGAAAGAATCACCAGTACCAGTGTCGATTCAGTC
GAAATTGCACTGTGGACAAAGACAAGCGAAACCAATGTCGTTATTGCCGACTAAGAAAAT
GTTTTCGAGCTGGAATGAAAAGAGAAGCCGTTCAAAACGAACGCGACAGAATAAGCACAA
AGAAATCAACCATTGACGATTCTGCTTCGTTGTCGGTTACAACACTGTTAAATGCGGATA
CCATGTCGAAACAGCCCTCTGCAGGTTCAGCGGGTGATGTCACTGATACTGTATCCATTG
AGAATAAGAAGATAGCATCAGTAAACGACGTTTGTGATTCCATAAGGCAGCAACTCCTAG
TGTTGGTGGAATGGGCAAAATATATCCCAGCCTTTTCAGAACTTCCTTTAGATGACCAGG
TGGCATTGTTGCGTGCACACGCAGGTGAGAACTTGTTGATGGGCGCAGCCAAGCGATCAT
TGCCATATAAAGATGTACTTCTTCTTGGTAATGACTTCATTATTCCAAGGCATTGCCCTG
AGGTTGAAATCACAAGAGTTGCGGTTCGTGTCCTGGATGAGTTGGTACGACCTCTCGCGG
ATCTCTCCTTGGATGCAAATGAGTTTGCTTGTCTTAAAGCAATTGTCTTTTTTGATCCAG
ATGCTCGTGGCTTGAACAACCCGACAAAAATCAAGCAAATGAGATCCCAGGTTATGTGTA
ACCTTGAAGATTATATCAATGACAGACAATATGATTCTCGTGGCAGATTTGGTGAAATAC
TTCTTCTACTGCCAACCTTACAAAGCATAACTTGGCAGATGATCGAACAAATCCAGTTCG
TTCGAATTTTCGGCGTTGCAAGGGTGGACAACCTTCTACAAGAGATGTTGCTTGGAAGTG
CAAATGAAGCTCAAGCAAGCATGATTCCTGCATCAGCTGCACAATGCGGTGCAATGGGAC
CTGGGAGCCCAACTCATATCTCCTTGGCTAACGGCATGGTCCCATGCTCACCTGGCCTTA
TGACAATGGGTGAGAAGCCACCGAACATGTCACCTACCACTCCTATCTCACCTTCCATGC
CACAAAACATGGGACAACCCATTGGTATGGAGATTGACAGCCACGTGCTTCTGCAACCAA
AGTCTGAGATTTTATGAGCTATGCAAATATGCAGATGTGCAAATGACACCAACAACTCCA
ATGCGGCGTTATGCATTCGCACAGTGTTACTGACTTTAAAGCGTCTCTGTTAATTTTGCT
CTAGCTGTATCCACAACCGCTATCACGCAATTATTCTTTTTAAAGTTGAAAAACTACAGC
TGCACAAGGTTGAACTGGCTCGTTGATTGAATAATTTCTTTCATTATTTTGTACATGTAT
CACTACCTTCTTTATTCTCAACTCTTTAGCTACTGTCTGACAATTACTAAGTAGCTACTC
TATTGGCTGATACTCCCAAGAATATGTGGAGTTAATGCAACAAAGTCTCATTCACCGCTA
TGCACTAATGTTGATGGGATAGCGATACGACTACAAAGAAGTCCTTGTCCTTTTCAAAGT
TTCTTTTGTGTTAAGTTGTTTTTATAAGTTAAATCATGTATCGTGCCTGAGAGTCACTTT
TATCTTTTCGTCTTATAAGAATAATTGAAATGTTGCCAATGTTTGCTTGTACACCCTATC
CACTTCTGAGCTTGCCAAACCCCTCCCAGCTCCGTTGTTACCACGAGGTTTGTGGTTTAA
TGAGGTAAGCTAACTTTTACCCTGTTGATTTGACCAAGCAATATACTCGCACTAAAAAAA
CTGTTGTTTGTGACAATATTATGGTGCTACTGTTCTTCTTGTAATGTCAAAGTTAATAAG
GATTTTAAATTCAATAAGATAGTACACCTGGAATGAAACTTTGCTTCATACGTAAAGCGA
TAGTTTTGTGTTTTACACAGAAGCCCGGATTTCATATTGAGTGTTGAATCTCTATTGTGT
AATTACATAAGTCTTCTTTTAACATGTATTCAACTTGTGTTCATTCCACTTCATTTCCGC
AAAATTGAAATCCTGCAACTATTTC
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[115-203] 2.7E-33 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[120-191] 7.8E-38 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[120-195] 21.147 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[122-190] 2.5E-29 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[123-149] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[123-139] 5.0E-18 - T[139-154] 5.0E-18 - T[172-180] 5.0E-18 - T[180-188] 5.0E-18 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[184-194] 3.0E-25 - T[256-277] 3.0E-25 - T[277-293] 3.0E-25 - T[344-359] 3.0E-25 - T[401-418] 3.0E-25 |
| PRINTS |
Retinoid-X_rcpt/HNF4 (IPR000003) - T[191-204] 4.3E-6 - T[332-350] 4.3E-6 - T[373-392] 4.3E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[214-440] 4.59E-62 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[242-426] 4.7E-38 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[255-413] 3.1E-45 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RXRA_HUMAN | 37.104 % | 275 | 5.11E-87 |
| HNF4A_HUMAN | 72.727 % | 509 | 6.25E-178 |
| HNF4G_HUMAN | 74.39 % | 509 | 5.26E-179 |