- Transcript 'KH2012:KH.C3.84.v3.A...'
Transcript Model
Transcript Id
KH2012:KH.C3.84.v3.A.ND2-1
Possible name(s)
HNF4A; HNF4G; RXRA
Gene model
Location
KhC3 [2,554,856 / 2,564,173]
Amino acid sequence
Length: 494
>KH.C3.84.v3.A.ND2-1
ILRRNLENLGHDSPTSLHGNGPDIGAFTYGMPHPMSPAHPMNPSPTADVPIHPISPESVG
MPGGLINGHGSDHESNTSMVGEGDGVRTFCAICGDRATGKHYGASSCDGCKGFFRRSVRK
NHQYQCRFSRNCTVDKDKRNQCRYCRLRKCFRAGMKREAVQNERDRISTKKSTIDDSASL
SVTTLLNADTMSKQPSAGSAGDVTDTVSIENKKIASVNDVCDSIRQQLLVLVEWAKYIPA
FSELPLDDQVALLRAHAGENLLMGAAKRSLPYKDVLLLGNDFIIPRHCPEVEITRVAVRV
LDELVRPLADLSLDANEFACLKAIVFFDPDARGLNNPTKIKQMRSQVMCNLEDYINDRQY
DSRGRFGEILLLLPTLQSITWQMIEQIQFVRIFGVARVDNLLQEMLLGSANEAQASMIPA
SAAQCGAMGPGSPTHISLANGMVPCSPGLMTMGEKPPNMSPTTPISPSMPQNMGQPIGME
IDSHVLLQPKSEIL
Nucleotide sequence
Length: 2,709
>KH2012:KH.C3.84.v3.A.ND2-1
ATTATTGTTCTGATTTATACTTAATGTGGATTCTATTGTCCAATTGGAAGTGTTGATATC
TGAAGCTTACCAGTGGACGCGGTCCATCACTGTATGTGCGTGTGTGTGTGTAAAGTCGTT
CATTGAAGCCAAGACCCCATACATACCAAAGCTGTAAAATGATGGACGCCGACATGCACT
CTAATTATGGTTTAGACGCTGTCAACCCCGATCAGCTTTATCAAGATATGATACCAAGTC
TTCAAGATTAAACGAACATCGAGTCTGTGGGTTCCAGAATTTACCGTAAAAAACAACAGC
AAGCCTCCGGCATTGAATACTGCGCCGTAATCTTGAAAATCTCGGTCACGATTCTCCAAC
CTCTTTGCATGGAAATGGGCCTGACATCGGCGCCTTCACCTACGGAATGCCACACCCCAT
GAGCCCCGCTCACCCAATGAACCCCAGTCCAACAGCAGACGTTCCAATACATCCAATCTC
CCCGGAGTCAGTTGGTATGCCCGGGGGTTTGATCAATGGGCATGGGAGTGACCATGAGTC
TAATACTTCGATGGTGGGAGAAGGAGATGGCGTGAGGACATTTTGTGCAATCTGCGGCGA
CCGGGCAACAGGCAAGCATTACGGTGCGAGCAGCTGTGATGGCTGTAAAGGATTTTTTCG
CCGAAGTGTGAGAAAGAATCACCAGTACCAGTGTCGATTCAGTCGAAATTGCACTGTGGA
CAAAGACAAGCGAAACCAATGTCGTTATTGCCGACTAAGAAAATGTTTTCGAGCTGGAAT
GAAAAGAGAAGCCGTTCAAAACGAACGCGACAGAATAAGCACAAAGAAATCAACCATTGA
CGATTCTGCTTCGTTGTCGGTTACAACACTGTTAAATGCGGATACCATGTCGAAACAGCC
CTCTGCAGGTTCAGCGGGTGATGTCACTGATACTGTATCCATTGAGAATAAGAAGATAGC
ATCAGTAAACGACGTTTGTGATTCCATAAGGCAGCAACTCCTAGTGTTGGTGGAATGGGC
AAAATATATCCCAGCCTTTTCAGAACTTCCTTTAGATGACCAGGTGGCATTGTTGCGTGC
ACACGCAGGTGAGAACTTGTTGATGGGCGCAGCCAAGCGATCATTGCCATATAAAGATGT
ACTTCTTCTTGGTAATGACTTCATTATTCCAAGGCATTGCCCTGAGGTTGAAATCACAAG
AGTTGCGGTTCGTGTCCTGGATGAGTTGGTACGACCTCTCGCGGATCTCTCCTTGGATGC
AAATGAGTTTGCTTGTCTTAAAGCAATTGTCTTTTTTGATCCAGATGCTCGTGGCTTGAA
CAACCCGACAAAAATCAAGCAAATGAGATCCCAGGTTATGTGTAACCTTGAAGATTATAT
CAATGACAGACAATATGATTCTCGTGGCAGATTTGGTGAAATACTTCTTCTACTGCCAAC
CTTACAAAGCATAACTTGGCAGATGATCGAACAAATCCAGTTCGTTCGAATTTTCGGCGT
TGCAAGGGTGGACAACCTTCTACAAGAGATGTTGCTTGGAAGTGCAAATGAAGCTCAAGC
AAGCATGATTCCTGCATCAGCTGCACAATGCGGTGCAATGGGACCTGGGAGCCCAACTCA
TATCTCCTTGGCTAACGGCATGGTCCCATGCTCACCTGGCCTTATGACAATGGGTGAGAA
GCCACCGAACATGTCACCTACCACTCCTATCTCACCTTCCATGCCACAAAACATGGGACA
ACCCATTGGTATGGAGATTGACAGCCACGTGCTTCTGCAACCAAAGTCTGAGATTTTATG
AGCTATGCAAATATGCAGATGTGCAAATGACACCAACAACTCCAATGCGGCGTTATGCAT
TCGCACAGTGTTACTGACTTTAAAGCGTCTCTGTTAATTTTGCTCTAGCTGTATCCACAA
CCGCTATCACGCAATTATTCTTTTTAAAGTTGAAAAACTACAGCTGCACAAGGTTGAACT
GGCTCGTTGATTGAATAATTTCTTTCATTATTTTGTACATGTATCACTACCTTCTTTATT
CTCAACTCTTTAGCTACTGTCTGACAATTACTAAGTAGCTACTCTATTGGCTGATACTCC
CAAGAATATGTGGAGTTAATGCAACAAAGTCTCATTCACCGCTATGCACTAATGTTGATG
GGATAGCGATACGACTACAAAGAAGTCCTTGTCCTTTTCAAAGTTTCTTTTGTGTTAAGT
TGTTTTTATAAGTTAAATCATGTATCGTGCCTGAGAGTCACTTTTATCTTTTCGTCTTAT
AAGAATAATTGAAATGTTGCCAATGTTTGCTTGTACACCCTATCCACTTCTGAGCTTGCC
AAACCCCTCCCAGCTCCGTTGTTACCACGAGGTTTGTGGTTTAATGAGGTAAGCTAACTT
TTACCCTGTTGATTTGACCAAGCAATATACTCGCACTAAAAAAACTGTTGTTTGTGACAA
TATTATGGTGCTACTGTTCTTCTTGTAATGTCAAAGTTAATAAGGATTTTAAATTCAATA
AGATAGTACACCTGGAATGAAACTTTGCTTCATACGTAAAGCGATAGTTTTGTGTTTTAC
ACAGAAGCCCGGATTTCATATTGAGTGTTGAATCTCTATTGTGTAATTACATAAGTCTTC
TTTTAACATGTATTCAACTTGTGTTCATTCCACTTCATTTCCGCAAAATTGAAATCCTGC
AACTATTTC
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[82-170] 2.5E-33 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[87-158] 7.8E-38 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[87-162] 21.147 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[89-157] 2.3E-29 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[90-116] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[90-106] 4.0E-18 - T[106-121] 4.0E-18 - T[139-147] 4.0E-18 - T[147-155] 4.0E-18 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[151-161] 2.3E-25 - T[223-244] 2.3E-25 - T[244-260] 2.3E-25 - T[311-326] 2.3E-25 - T[368-385] 2.3E-25 |
| PRINTS |
Retinoid-X_rcpt/HNF4 (IPR000003) - T[158-171] 3.6E-6 - T[299-317] 3.6E-6 - T[340-359] 3.6E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[181-407] 4.46E-62 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[209-393] 4.1E-38 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[222-380] 3.1E-45 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RXRG_HUMAN | 41.212 % | 273 | 1.18E-86 |
| HNF4A_HUMAN | 72.727 % | 509 | 1.76E-178 |
| HNF4G_HUMAN | 74.39 % | 508 | 3.43E-179 |