- EST 'FF886059.1' >
- Clone 'cien123233' >
- Transcript 'KH2012:KH.L134.4.v3....' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C3.905.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.905.v1.C.SL2-1
Possible name(s)
SLIT1; SLIT3; SLITRK3
Gene model
Location
KhC3 [2,012,082 / 2,016,731]
Amino acid sequence
Length: 452
>KH.C3.905.v1.C.SL2-1
MVVLKILILCLPVVYSAHTNAVSPCDGITNCLCSSSAVNCTGAGLTSLPPTINAGKLYYY
FEENQLKTLNKNTFRHFIKAKHINAGKNRISHLGPKTFNHNKLLSQLYLDNNRITSLPAT
LFTNNHNLTLFSANFNNITSISSGLFKNCPLLSYISITNNQLAAIAPDAFTTNLVLSRLL
LEVNHLTTPMWQWIDHLKHSETFEIYLDRNPWICDCRMKQFKIEVETHSWYQRAETPKSG
KKGIASHVRCSAPPNHASMNIEAVDSLSLTCESPTILTNTSVLLAEGKPGVVTCSATGIP
VPQVWFADETGRNVTDPHPGVGNMTFNSVLTDEAGLYSCFASGWNSSGTWTLKSTPVTVI
VKSKPAAGLIITLAFILPALVIVGIVVFIRQRHKRRDGYGSLTNENGASARYDHLNDADV
TSATVLRDSSDDEMDELVSYAKDTADEREVLV
Nucleotide sequence
Length: 2,066
>KH2012:KH.C3.905.v1.C.SL2-1
CATGGTAGTTTTAAAGATTCTTATTTTGTGTTTGCCTGTGGTATACTCTGCGCACACAAA
TGCGGTTTCGCCTTGCGATGGAATCACGAATTGTTTATGTTCGTCATCAGCAGTAAACTG
CACTGGTGCTGGTCTAACATCACTCCCCCCAACAATTAATGCGGGAAAACTATATTATTA
TTTTGAAGAAAATCAACTCAAAACTTTGAACAAAAACACATTTCGTCACTTCATCAAAGC
CAAACATATAAATGCGGGGAAAAATCGTATCAGCCATTTAGGACCGAAGACCTTCAACCA
CAACAAATTATTGTCCCAACTATATCTTGATAATAACAGGATTACAAGCCTACCAGCAAC
ATTGTTTACCAACAACCACAATCTCACGTTGTTTTCTGCAAACTTTAACAACATTACGTC
AATTAGCTCCGGCTTGTTTAAGAACTGTCCACTGTTATCTTATATCAGCATTACTAATAA
CCAGCTAGCTGCAATTGCCCCAGATGCCTTCACTACTAACCTGGTGCTCAGCAGATTGTT
ATTGGAAGTTAATCATCTCACGACTCCAATGTGGCAATGGATCGACCATCTGAAACATTC
GGAAACATTTGAAATTTATTTGGATAGAAACCCTTGGATATGTGACTGCAGGATGAAACA
GTTTAAGATTGAAGTGGAGACACACAGTTGGTATCAACGAGCAGAAACACCAAAGAGCGG
TAAGAAGGGAATTGCGTCACATGTACGGTGTTCAGCACCCCCAAACCATGCCAGCATGAA
CATTGAAGCTGTAGATTCGTTAAGTTTAACTTGCGAATCACCGACTATTTTAACCAACAC
CAGCGTTCTGCTTGCTGAGGGCAAACCGGGAGTAGTTACGTGTTCAGCAACTGGAATTCC
CGTCCCGCAAGTCTGGTTTGCTGATGAGACTGGGCGAAATGTAACAGATCCGCATCCAGG
AGTGGGGAACATGACTTTCAATTCGGTTTTAACTGACGAAGCTGGGCTATATTCTTGTTT
CGCTTCTGGTTGGAACAGTTCAGGAACATGGACTCTAAAATCGACTCCTGTGACTGTGAT
TGTAAAATCCAAGCCAGCAGCTGGATTGATTATAACACTTGCTTTCATATTGCCGGCTCT
TGTCATCGTTGGGATTGTTGTATTTATTCGGCAAAGGCATAAGCGTCGAGATGGATACGG
TTCGCTCACAAATGAGAACGGCGCTTCTGCACGTTACGATCACTTAAACGACGCAGATGT
GACTTCAGCCACAGTATTACGCGATAGCTCCGACGACGAAATGGACGAACTGGTGAGCTA
CGCCAAAGATACCGCAGACGAAAGAGAAGTACTGGTATAGCGATACCCAATGACAAGACA
AATATCTACGGGAAAGATTTGCGCCTATTTCAATATGGCATGTGCAGTATAGTAATATGA
CTAAGTTGGAGCTATATATATTATTTTGCTTATATTTTTGTAAAAAAAAACGCTTTTGCT
TTTGATACTCTGCTGTTGCTTTGATTATTATTAAAATATACCGGCTGGACTTTTAAATTA
ATGATAGCAAAAGATAAGCCATACTAGCTATACTTGTATGCTGGAGATTCAGAGCTCAAC
TTGGTCTCCGTTTCTCAAGAGCTTTTCCTTGGTGTTCCTTTATCAAGAAAACAGTAAATA
CTTTTTATTGTAAAGTGAACGTCAGCTAACTAACTTGTTGAAATGTTGACGAAATGTAAT
TTTTGCCTTCCCCTTTCTTCTGCCCGAATCCAAACAATCCACACCCGAACTTGAATATTT
CTTTGTCATTTCCGGGATAAAAACCTGTGATGAAGAGAAAACGAAGTTCGCTTATTCTGT
TGTAAAAATTACTGGGTTTAATTCCAAGCAAATAGTAACAGTAGGTTGCACGTAAGTGAT
GGAAACAGGAGGCACGTTAGTTATGTTCGAACACCAACGTATAGACAAATGAGCTGTTTA
CTATTATATCTACAAACCCCAAAAATGTTGTAAATTATACTTAAATCTCACGTTTTGAAA
TAAATTAAAATTTCTTTTGTTTTCTA
| Gene3D |
LRR_dom_sf (IPR032675) - T[27-128] 4.6E-17 - T[129-276] 8.9E-23 |
| Pfam |
LRR_5 (IPR026906) - T[64-172] 8.1E-10 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[103-124] 7.142 - T[127-148] 5.594 - T[151-172] 4.786 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[210-272] 1.4E-4 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[273-362] 1.9E-9 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[274-358] 9.609 |
| Gene3D |
Ig-like_fold (IPR013783) - T[277-367] 2.4E-6 |
| SMART |
Ig_sub (IPR003599) - T[279-362] 4.1E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 24.719 % | 86.7 | 7.18E-18 |
| SLIT3_HUMAN | 26.556 % | 83.6 | 6.04E-17 |
| SLIT2_HUMAN | 26.515 % | 83.6 | 6.49E-17 |