- Transcript 'KH2012:KH.C4.26.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C4.26.v1.A.ND1-1
Possible name(s)
ITGA3; ITGA6; ITGA7
Gene model
Location
KhC4 [2,220,728 / 2,235,687]
Amino acid sequence
Length: 933
>KH.C4.26.v1.A.ND1-1
ANYIFCSFSKQASPCDQLQRANTLSKNNLGYSQSGVSLSLIDNEYLLGGPGMWSWTGGMF
DIQMADLEATEALDIFTSSTAMYETLGCYKNELDRGKVKCDNIPLRRDSYLGFSVASSNA
IKPGETTYVAGAPRGNYTGAIVMYRKISDGLSKSLAPILTDTILGEFIGSGFGFSVATID
VNGDGLDDLLVGAPQYYEYSNEGKHGGAVYVYINQRGVAFSQITPKKLLGSLDSFFGYSI
ASVGDIDQDGYIDFAVGAPQEKPNGKVYIFRGSADGNVKQSQVFNGANFTDIKPDVKGFG
VSLSGAVDIDNNKYPDLLVGTLSDYVVLLRSRPVITIESSLSASPTSLDLRNPNCTLASK
TYSCFELQFCFRYNARHKEYTEILPIHYSITLDSELQKERKAARVAFASPQGPSLMSDVA
NVPRAGQWYCPGGKYKVFFIGSEDRLRPIKIDFEFNLASEINGVKRERPDQPVFNMINDP
IMDADFPHARTSVVNLANNCGDDGCQSNLKLRGSIPPEVVVGRDSKMLLSLNVTNDGEEA
HQAVVSAKLPAWVYYDNYTVTRSSGAEIVCTTSDIGGSTFVVCTLGNPYVEGSADTIDIL
LDVQQLTADTKQIVIEVTGSTTSINPEIPPTPLYSDVIIQMMLSLSGYGKPQQVRYVNAP
IKGESAIHYTNEIGPFVEYTFTVKNDGLQLANGVRLIVDFPIEINNGKWLMYLVSAHVRS
GGLQIVGECEQQYQNTLHFKLPVTASVSAARRTKREAKASSLYEPRRLSSTQSGSNFVTL
DCHGDTARCVKIGCTLDPIQPGSTTSVNLQARLWNNTFLEEFVDIDLVNVAASATVSNID
SNVRITGSPTHEALTTVDHAYFEVSVKSSFPWWYILIGILIALIIYIIIIYLLIKCGFFK
RKKYPRNQHHAQDDNGAAVAEEEKEPTNRETAT
Nucleotide sequence
Length: 3,287
>KH2012:KH.C4.26.v1.A.ND1-1
CATTAATCTGTAGACGCTGTTTACCTCTTAGCTGAATTTAAATGTCCAACAACATAAACT
ACATTATGTTATCATAGGCTAATTATATTTTTTGTTCTTTTTCTAAACAAGCGTCTCCGT
GCGACCAATTACAACGAGCGAATACGCTTTCCAAAAACAACTTGGGATATTCACAGAGTG
GCGTTTCTCTGTCACTTATAGACAACGAATATTTGTTGGGTGGACCTGGTATGTGGTCAT
GGACAGGCGGGATGTTTGATATCCAGATGGCAGATCTGGAAGCAACGGAAGCTTTAGATA
TTTTTACATCTTCTACGGCGATGTACGAGACGCTGGGCTGTTACAAAAACGAATTGGACC
GCGGAAAAGTAAAATGCGACAATATTCCGTTGCGAAGAGACAGCTATTTGGGATTTTCAG
TTGCATCAAGTAACGCAATTAAACCTGGAGAAACAACGTACGTGGCTGGGGCACCAAGGG
GCAACTATACTGGTGCCATCGTAATGTATCGAAAAATAAGCGATGGTCTTTCGAAAAGTC
TTGCACCTATACTAACGGATACAATACTTGGCGAATTTATTGGATCCGGATTTGGTTTTT
CAGTGGCGACCATTGATGTAAATGGAGACGGTCTGGACGATTTATTAGTTGGGGCACCGC
AGTATTACGAGTATTCGAACGAGGGAAAACACGGAGGCGCAGTCTACGTTTATATAAACC
AACGTGGTGTAGCTTTCAGTCAAATCACACCGAAGAAATTGTTGGGATCACTGGACTCTT
TCTTTGGTTATTCCATCGCTTCAGTTGGAGATATTGACCAAGATGGCTACATAGATTTCG
CGGTCGGCGCTCCACAGGAAAAACCAAACGGAAAAGTCTACATTTTCCGAGGTTCCGCCG
ACGGCAACGTAAAGCAGTCGCAGGTATTTAACGGAGCTAACTTTACCGATATCAAACCGG
ACGTCAAAGGCTTCGGCGTCTCATTGTCCGGTGCAGTGGATATTGACAATAATAAATATC
CTGATCTTTTGGTCGGGACTTTATCCGACTATGTTGTGCTGCTACGGTCAAGACCAGTTA
TCACAATCGAGTCAAGCCTTTCTGCAAGTCCCACTAGTTTGGATCTAAGAAATCCGAACT
GCACACTTGCTTCAAAGACATATTCTTGCTTCGAGCTTCAGTTTTGTTTCAGATACAATG
CTCGACATAAGGAATACACGGAGATACTGCCAATACATTATAGCATAACGTTGGACAGTG
AGCTTCAGAAAGAACGAAAGGCTGCAAGAGTGGCATTCGCTTCTCCCCAAGGACCAAGCC
TTATGAGTGACGTAGCCAATGTTCCAAGAGCCGGTCAATGGTATTGTCCTGGTGGGAAGT
ACAAAGTTTTCTTCATCGGTTCTGAAGATCGTTTGCGACCAATCAAGATTGATTTTGAGT
TTAATCTTGCAAGTGAGATAAACGGTGTGAAAAGGGAGAGACCAGACCAACCAGTGTTCA
ACATGATCAATGACCCGATCATGGACGCCGATTTTCCGCATGCCCGAACTTCTGTGGTGA
ATCTTGCCAACAACTGTGGCGATGACGGTTGTCAGAGCAATCTCAAACTACGAGGTTCAA
TTCCCCCTGAAGTCGTGGTCGGTCGAGACAGCAAAATGCTTCTTTCTCTCAATGTAACCA
ACGACGGTGAAGAGGCTCATCAAGCTGTTGTATCAGCTAAGCTCCCTGCTTGGGTTTACT
ACGATAACTACACAGTAACTAGATCCTCTGGAGCCGAGATAGTGTGCACTACATCCGACA
TAGGCGGTTCTACATTTGTTGTTTGCACTCTTGGGAATCCGTATGTTGAAGGCAGTGCAG
ATACCATTGATATATTGTTAGACGTTCAACAACTAACTGCTGACACCAAACAGATTGTGA
TTGAGGTGACAGGATCAACTACAAGCATAAACCCGGAGATCCCACCCACCCCACTCTATT
CCGACGTTATAATTCAAATGATGCTATCTCTATCCGGCTACGGCAAGCCTCAGCAGGTTC
GTTACGTCAATGCTCCAATAAAAGGAGAGTCGGCAATTCATTATACGAACGAGATTGGAC
CGTTTGTTGAATATACGTTCACGGTGAAAAATGACGGACTACAGCTGGCAAACGGAGTTC
GTCTTATAGTGGATTTCCCTATTGAAATCAATAACGGTAAATGGTTAATGTACCTTGTAT
CTGCCCATGTTCGATCTGGAGGTTTACAAATAGTTGGAGAATGTGAACAACAGTACCAAA
ACACTTTACATTTCAAATTACCTGTCACTGCGTCCGTCAGCGCAGCCAGGAGGACAAAAC
GGGAGGCAAAAGCTTCAAGTTTGTATGAACCACGTCGCTTATCATCAACGCAGAGTGGTT
CGAATTTCGTGACACTTGACTGTCATGGAGATACTGCGAGATGCGTGAAAATCGGCTGCA
CCTTAGATCCTATACAACCAGGGTCAACGACATCGGTTAACTTGCAAGCCAGGTTGTGGA
ACAACACTTTCCTGGAGGAGTTTGTTGACATCGACTTAGTGAACGTTGCAGCTTCAGCTA
CAGTTTCTAACATTGATAGCAACGTTCGAATCACTGGTTCGCCCACCCACGAGGCACTTA
CTACAGTGGATCACGCGTATTTTGAAGTGTCAGTCAAGTCTTCGTTCCCATGGTGGTACA
TCCTTATCGGCATCCTAATTGCTCTCATCATTTACATTATTATCATTTACCTTCTAATCA
AATGCGGATTTTTCAAGCGGAAGAAGTACCCCAGAAATCAACATCATGCGCAAGACGACA
ACGGTGCTGCAGTGGCTGAAGAAGAAAAGGAACCAACGAACAGAGAAACGGCAACGTGAT
ATCGCCGTGTGTATGGGATTATATAGGTTATTGGGGGCATTGCTTGACTCGTATTTTAAA
CACATGTGAATGTGGTCCTTTATTACAGCCGCATGAGATAACATGTTGATGTTCGTGATA
GAATACTATTACACCGATGTTTTAAATTTATCAAACTTTGTCAACATTTTCAATTAATGA
CCGCGAACGGCACTTATTCAATCATTTCAACTGAGTTTTTTTTACTTAAATTGAATATAT
TATTTAACCGCTTTAAAGTAAAGTATATATGGTCGTTTTTAAAACGTTTCTTTTGCATGC
TTGGAAAGTATTTTACAATTTTAAAAAAACTTAGAAATGAAATTTTGTTTGGAGCATCTT
TTTGTACGTAACTAACATAAAATTGAAATAAAAATTGGTAACACCTG
| Gene3D |
Integrin_alpha_N (IPR028994) - T[5-335] 3.2E-82 |
| ProSiteProfiles |
Int_alpha_beta-p (IPR013519) - T[20-71] 6.076 - T[97-153] 6.921 - T[158-221] 14.052 - T[222-279] 12.993 - T[285-346] 10.112 |
| SMART |
Int_alpha_beta-p (IPR013519) - T[107-160] 0.0013 - T[168-230] 4.4E-14 - T[232-286] 6.0E-17 - T[295-350] 29.0 |
| PRINTS |
Integrin_alpha (IPR000413) - T[108-120] 6.0E-54 - T[165-185] 6.0E-54 - T[235-259] 6.0E-54 - T[299-320] 6.0E-54 - T[325-344] 6.0E-54 - T[444-457] 6.0E-54 - T[882-901] 6.0E-54 |
| Pfam |
FG-GAP (IPR013517) - T[172-212] 5.6E-12 |
| Pfam |
Integrin_alpha-2 (IPR013649) - T[331-794] 1.1E-79 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[333-502] 6.28E-21 - T[502-626] 1.83E-20 - T[640-875] 9.42E-40 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITA7_HUMAN | 30.967 % | 363 | 9.04E-109 |
| ITA6_HUMAN | 32.012 % | 413 | 1.15E-127 |
| ITA3_HUMAN | 29.778 % | 295 | 2.4E-85 |