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  1. Transcript 'KH2012:KH.C4.26.v2.A...'

Transcript Model

Transcript Id

KH2012:KH.C4.26.v2.A.SL2-1

Possible name(s)

ITGA3; ITGA6; ITGA7

Location

KhC4 [2,220,728 / 2,237,988]

Sequences

Amino acid sequence

Length: 1,083

>KH.C4.26.v2.A.SL2-1
NLKESITKKRFTISNKYKLSVMELTFLFSIAMLFSCTMGYNLEGRLPLYKSGGTNSTFGF
SVALHKLSIDPGSSLEKSLLVVGSPTAEALPSQTNAVKPGGIYHCPVSTNSEDCTRIAMD
LGESSRTNNKTGQWLGVSLKSQGAGKYLITCAHRHSMRLYSRVNEVERLCGKCFLLNGTD
ANGLTEITPSDVDNRFIGGPGMWSWTGGMFDIQMADLEATEALDIFTSSTAMYETLGCYK
NELDRGKVKCDNIPLRRDSYLGFSVASSNAIKPGETTYVAGAPRGNYTGAIVMYRKISDG
LSKSLAPILTDTILGEFIGSGFGFSVATIDVNGDGLDDLLVGAPQYYEYSNEGKHGGAVY
VYINQRGVAFSQITPKKLLGSLDSFFGYSIASVGDIDQDGYIDFAVGAPQEKPNGKVYIF
RGSADGNVKQSQVFNGANFTDIKPDVKGFGVSLSGAVDIDNNKYPDLLVGTLSDYVVLLR
SRPVITIESSLSASPTSLDLRNPNCTLASKTYSCFELQFCFRYNARHKEYTEILPIHYSI
TLDSELQKERKAARVAFASPQGPSLMSDVANVPRAGQWYCPGGKYKVFFIGSEDRLRPIK
IDFEFNLASEINGVKRERPDQPVFNMINDPIMDADFPHARTSVVNLANNCGDDGCQSNLK
LRGSIPPEVVVGRDSKMLLSLNVTNDGEEAHQAVVSAKLPAWVYYDNYTVTRSSGAEIVC
TTSDIGGSTFVVCTLGNPYVEGSADTIDILLDVQQLTADTKQIVIEVTGSTTSINPEIPP
TPLYSDVIIQMMLSLSGYGKPQQVRYVNAPIKGESAIHYTNEIGPFVEYTFTVKNDGLQL
ANGVRLIVDFPIEINNGKWLMYLVSAHVRSGGLQIVGECEQQYQNTLHFKLPVTASVSAA
RRTKREAKASSLYEPRRLSSTQSGSNFVTLDCHGDTARCVKIGCTLDPIQPGSTTSVNLQ
ARLWNNTFLEEFVDIDLVNVAASATVSNIDSNVRITGSPTHEALTTVDHAYFEVSVKSSF
PWWYILIGILIALIIYIIIIYLLIKCGFFKRKKYPRNQHHAQDDNGAAVAEEEKEPTNRE
TAT

Nucleotide sequence

Length: 3,912

>KH2012:KH.C4.26.v2.A.SL2-1
CATATGAAAGAGAGGATTTATACTTGAGGCGCGTACCTTTTGAACGACGCTAAGAACTAC
TCTTAACCCTGGGGCTAGATATCGGCGTATTTAGCCGAAAGATAATCCCGACATATTTAT
ATGTAATTCTCAATTGTAAACTGTAATCTTAAGCAGGGCTGCCGCTGCGACTGTCACACT
ATTGGATATATAACACTGTAAGCGTTGGTTTGAGAAAGTTTACTGTAGAACTGAGGCGGA
AATGAAACATAGAACTTGAAGGAATCAATAACCAAGAAACGCTTTACAATTTCAAACAAG
TACAAACTATCCGTCATGGAGTTAACTTTTCTCTTCAGCATTGCTATGCTGTTCAGTTGT
ACTATGGGATATAATCTTGAAGGACGTTTACCTTTGTACAAAAGTGGTGGGACCAACAGT
ACATTTGGATTCAGCGTTGCTTTACATAAACTTTCCATTGACCCAGGGAGTTCGCTGGAG
AAAAGCTTGCTCGTGGTTGGTAGCCCTACAGCCGAAGCCTTGCCAAGTCAAACAAATGCT
GTGAAACCTGGTGGAATATACCACTGCCCAGTTAGTACTAACTCTGAAGATTGTACCCGA
ATAGCCATGGATTTGGGCGAATCCAGTAGAACTAACAACAAAACTGGGCAGTGGCTGGGC
GTCAGTCTTAAAAGCCAAGGTGCGGGGAAGTACCTGATAACGTGCGCCCATAGACACTCA
ATGAGATTATATTCGAGAGTAAACGAAGTCGAAAGGCTCTGCGGGAAGTGTTTTCTTTTG
AACGGTACTGATGCGAACGGATTGACCGAAATCACACCGAGTGATGTAGACAACAGATTT
ATAGGTGGACCTGGTATGTGGTCATGGACAGGCGGGATGTTTGATATCCAGATGGCAGAT
CTGGAAGCAACGGAAGCTTTAGATATTTTTACATCTTCTACGGCGATGTACGAGACGCTG
GGCTGTTACAAAAACGAATTGGACCGCGGAAAAGTAAAATGCGACAATATTCCGTTGCGA
AGAGACAGCTATTTGGGATTTTCAGTTGCATCAAGTAACGCAATTAAACCTGGAGAAACA
ACGTACGTGGCTGGGGCACCAAGGGGCAACTATACTGGTGCCATCGTAATGTATCGAAAA
ATAAGCGATGGTCTTTCGAAAAGTCTTGCACCTATACTAACGGATACAATACTTGGCGAA
TTTATTGGATCCGGATTTGGTTTTTCAGTGGCGACCATTGATGTAAATGGAGACGGTCTG
GACGATTTATTAGTTGGGGCACCGCAGTATTACGAGTATTCGAACGAGGGAAAACACGGA
GGCGCAGTCTACGTTTATATAAACCAACGTGGTGTAGCTTTCAGTCAAATCACACCGAAG
AAATTGTTGGGATCACTGGACTCTTTCTTTGGTTATTCCATCGCTTCAGTTGGAGATATT
GACCAAGATGGCTACATAGATTTCGCGGTCGGCGCTCCACAGGAAAAACCAAACGGAAAA
GTCTACATTTTCCGAGGTTCCGCCGACGGCAACGTAAAGCAGTCGCAGGTATTTAACGGA
GCTAACTTTACCGATATCAAACCGGACGTCAAAGGCTTCGGCGTCTCATTGTCCGGTGCA
GTGGATATTGACAATAATAAATATCCTGATCTTTTGGTCGGGACTTTATCCGACTATGTT
GTGCTGCTACGGTCAAGACCAGTTATCACAATCGAGTCAAGCCTTTCTGCAAGTCCCACT
AGTTTGGATCTAAGAAATCCGAACTGCACACTTGCTTCAAAGACATATTCTTGCTTCGAG
CTTCAGTTTTGTTTCAGATACAATGCTCGACATAAGGAATACACGGAGATACTGCCAATA
CATTATAGCATAACGTTGGACAGTGAGCTTCAGAAAGAACGAAAGGCTGCAAGAGTGGCA
TTCGCTTCTCCCCAAGGACCAAGCCTTATGAGTGACGTAGCCAATGTTCCAAGAGCCGGT
CAATGGTATTGTCCTGGTGGGAAGTACAAAGTTTTCTTCATCGGTTCTGAAGATCGTTTG
CGACCAATCAAGATTGATTTTGAGTTTAATCTTGCAAGTGAGATAAACGGTGTGAAAAGG
GAGAGACCAGACCAACCAGTGTTCAACATGATCAATGACCCGATCATGGACGCCGATTTT
CCGCATGCCCGAACTTCTGTGGTGAATCTTGCCAACAACTGTGGCGATGACGGTTGTCAG
AGCAATCTCAAACTACGAGGTTCAATTCCCCCTGAAGTCGTGGTCGGTCGAGACAGCAAA
ATGCTTCTTTCTCTCAATGTAACCAACGACGGTGAAGAGGCTCATCAAGCTGTTGTATCA
GCTAAGCTCCCTGCTTGGGTTTACTACGATAACTACACAGTAACTAGATCCTCTGGAGCC
GAGATAGTGTGCACTACATCCGACATAGGCGGTTCTACATTTGTTGTTTGCACTCTTGGG
AATCCGTATGTTGAAGGCAGTGCAGATACCATTGATATATTGTTAGACGTTCAACAACTA
ACTGCTGACACCAAACAGATTGTGATTGAGGTGACAGGATCAACTACAAGCATAAACCCG
GAGATCCCACCCACCCCACTCTATTCCGACGTTATAATTCAAATGATGCTATCTCTATCC
GGCTACGGCAAGCCTCAGCAGGTTCGTTACGTCAATGCTCCAATAAAAGGAGAGTCGGCA
ATTCATTATACGAACGAGATTGGACCGTTTGTTGAATATACGTTCACGGTGAAAAATGAC
GGACTACAGCTGGCAAACGGAGTTCGTCTTATAGTGGATTTCCCTATTGAAATCAATAAC
GGTAAATGGTTAATGTACCTTGTATCTGCCCATGTTCGATCTGGAGGTTTACAAATAGTT
GGAGAATGTGAACAACAGTACCAAAACACTTTACATTTCAAATTACCTGTCACTGCGTCC
GTCAGCGCAGCCAGGAGGACAAAACGGGAGGCAAAAGCTTCAAGTTTGTATGAACCACGT
CGCTTATCATCAACGCAGAGTGGTTCGAATTTCGTGACACTTGACTGTCATGGAGATACT
GCGAGATGCGTGAAAATCGGCTGCACCTTAGATCCTATACAACCAGGGTCAACGACATCG
GTTAACTTGCAAGCCAGGTTGTGGAACAACACTTTCCTGGAGGAGTTTGTTGACATCGAC
TTAGTGAACGTTGCAGCTTCAGCTACAGTTTCTAACATTGATAGCAACGTTCGAATCACT
GGTTCGCCCACCCACGAGGCACTTACTACAGTGGATCACGCGTATTTTGAAGTGTCAGTC
AAGTCTTCGTTCCCATGGTGGTACATCCTTATCGGCATCCTAATTGCTCTCATCATTTAC
ATTATTATCATTTACCTTCTAATCAAATGCGGATTTTTCAAGCGGAAGAAGTACCCCAGA
AATCAACATCATGCGCAAGACGACAACGGTGCTGCAGTGGCTGAAGAAGAAAAGGAACCA
ACGAACAGAGAAACGGCAACGTGATATCGCCGTGTGTATGGGATTATATAGGTTATTGGG
GGCATTGCTTGACTCGTATTTTAAACACATGTGAATGTGGTCCTTTATTACAGCCGCATG
AGATAACATGTTGATGTTCGTGATAGAATACTATTACACCGATGTTTTAAATTTATCAAA
CTTTGTCAACATTTTCAATTAATGACCGCGAACGGCACTTATTCAATCATTTCAACTGAG
TTTTTTTTACTTAAATTGAATATATTATTTAACCGCTTTAAAGTAAAGTATATATGGTCG
TTTTTAAAACGTTTCTTTTGCATGCTTGGAAAGTATTTTACAATTTTAAAAAAACTTAGA
AATGAAATTTTGTTTGGAGCATCTTTTTGTACGTAACTAACATAAAATTGAAATAAAAAT
TGGTAACACCTG

InterProScan

Gene3D
Integrin_alpha_N (IPR028994) - T[40-485] 6.2E-107
ProSiteProfiles
Int_alpha_beta-p (IPR013519) - T[44-114] 8.994 - T[120-185] 5.635 - T[247-303] 6.921 - T[308-371] 14.052 - T[372-429] 12.993 - T[435-496] 10.112
SMART
Int_alpha_beta-p (IPR013519) - T[54-121] 3.9 - T[257-310] 0.0013 - T[318-380] 4.4E-14 - T[382-436] 6.0E-17 - T[445-500] 29.0
PRINTS
Integrin_alpha (IPR000413) - T[258-270] 1.6E-53 - T[315-335] 1.6E-53 - T[385-409] 1.6E-53 - T[449-470] 1.6E-53 - T[475-494] 1.6E-53 - T[594-607] 1.6E-53 - T[1032-1051] 1.6E-53
Pfam
FG-GAP (IPR013517) - T[322-362] 6.6E-12
Pfam
Integrin_alpha-2 (IPR013649) - T[481-944] 1.5E-79
SUPERFAMILY
Integrin_dom_sf (IPR032695) - T[483-652] 7.85E-21 - T[652-776] 2.25E-20 - T[790-1025] 1.2E-39

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ITA7_HUMAN 31.196 % 451 6.12E-140
ITA6_HUMAN 31.861 % 488 3.7E-154
ITA3_HUMAN 29.211 % 354 2.49E-105





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