- Transcript 'KH2012:KH.C4.26.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C4.26.v2.A.SL4-1
Possible name(s)
ITGA3; ITGA6; ITGA7
Gene model
Location
KhC4 [2,220,728 / 2,237,727]
Amino acid sequence
Length: 1,080
>KH.C4.26.v2.A.SL4-1
ESITKKRFTISNKYKLSVMELTFLFSIAMLFSCTMGYNLEGRLPLYKSGGTNSTFGFSVA
LHKLSIDPGSSLEKSLLVVGSPTAEALPSQTNAVKPGGIYHCPVSTNSEDCTRIAMDLGE
SSRTNNKTGQWLGVSLKSQGAGKYLITCAHRHSMRLYSRVNEVERLCGKCFLLNGTDANG
LTEITPSDVDNRFIGGPGMWSWTGGMFDIQMADLEATEALDIFTSSTAMYETLGCYKNEL
DRGKVKCDNIPLRRDSYLGFSVASSNAIKPGETTYVAGAPRGNYTGAIVMYRKISDGLSK
SLAPILTDTILGEFIGSGFGFSVATIDVNGDGLDDLLVGAPQYYEYSNEGKHGGAVYVYI
NQRGVAFSQITPKKLLGSLDSFFGYSIASVGDIDQDGYIDFAVGAPQEKPNGKVYIFRGS
ADGNVKQSQVFNGANFTDIKPDVKGFGVSLSGAVDIDNNKYPDLLVGTLSDYVVLLRSRP
VITIESSLSASPTSLDLRNPNCTLASKTYSCFELQFCFRYNARHKEYTEILPIHYSITLD
SELQKERKAARVAFASPQGPSLMSDVANVPRAGQWYCPGGKYKVFFIGSEDRLRPIKIDF
EFNLASEINGVKRERPDQPVFNMINDPIMDADFPHARTSVVNLANNCGDDGCQSNLKLRG
SIPPEVVVGRDSKMLLSLNVTNDGEEAHQAVVSAKLPAWVYYDNYTVTRSSGAEIVCTTS
DIGGSTFVVCTLGNPYVEGSADTIDILLDVQQLTADTKQIVIEVTGSTTSINPEIPPTPL
YSDVIIQMMLSLSGYGKPQQVRYVNAPIKGESAIHYTNEIGPFVEYTFTVKNDGLQLANG
VRLIVDFPIEINNGKWLMYLVSAHVRSGGLQIVGECEQQYQNTLHFKLPVTASVSAARRT
KREAKASSLYEPRRLSSTQSGSNFVTLDCHGDTARCVKIGCTLDPIQPGSTTSVNLQARL
WNNTFLEEFVDIDLVNVAASATVSNIDSNVRITGSPTHEALTTVDHAYFEVSVKSSFPWW
YILIGILIALIIYIIIIYLLIKCGFFKRKKYPRNQHHAQDDNGAAVAEEEKEPTNRETAT
Nucleotide sequence
Length: 3,651
>KH2012:KH.C4.26.v2.A.SL4-1
GAATCAATAACCAAGAAACGCTTTACAATTTCAAACAAGTACAAACTATCCGTCATGGAG
TTAACTTTTCTCTTCAGCATTGCTATGCTGTTCAGTTGTACTATGGGATATAATCTTGAA
GGACGTTTACCTTTGTACAAAAGTGGTGGGACCAACAGTACATTTGGATTCAGCGTTGCT
TTACATAAACTTTCCATTGACCCAGGGAGTTCGCTGGAGAAAAGCTTGCTCGTGGTTGGT
AGCCCTACAGCCGAAGCCTTGCCAAGTCAAACAAATGCTGTGAAACCTGGTGGAATATAC
CACTGCCCAGTTAGTACTAACTCTGAAGATTGTACCCGAATAGCCATGGATTTGGGCGAA
TCCAGTAGAACTAACAACAAAACTGGGCAGTGGCTGGGCGTCAGTCTTAAAAGCCAAGGT
GCGGGGAAGTACCTGATAACGTGCGCCCATAGACACTCAATGAGATTATATTCGAGAGTA
AACGAAGTCGAAAGGCTCTGCGGGAAGTGTTTTCTTTTGAACGGTACTGATGCGAACGGA
TTGACCGAAATCACACCGAGTGATGTAGACAACAGATTTATAGGTGGACCTGGTATGTGG
TCATGGACAGGCGGGATGTTTGATATCCAGATGGCAGATCTGGAAGCAACGGAAGCTTTA
GATATTTTTACATCTTCTACGGCGATGTACGAGACGCTGGGCTGTTACAAAAACGAATTG
GACCGCGGAAAAGTAAAATGCGACAATATTCCGTTGCGAAGAGACAGCTATTTGGGATTT
TCAGTTGCATCAAGTAACGCAATTAAACCTGGAGAAACAACGTACGTGGCTGGGGCACCA
AGGGGCAACTATACTGGTGCCATCGTAATGTATCGAAAAATAAGCGATGGTCTTTCGAAA
AGTCTTGCACCTATACTAACGGATACAATACTTGGCGAATTTATTGGATCCGGATTTGGT
TTTTCAGTGGCGACCATTGATGTAAATGGAGACGGTCTGGACGATTTATTAGTTGGGGCA
CCGCAGTATTACGAGTATTCGAACGAGGGAAAACACGGAGGCGCAGTCTACGTTTATATA
AACCAACGTGGTGTAGCTTTCAGTCAAATCACACCGAAGAAATTGTTGGGATCACTGGAC
TCTTTCTTTGGTTATTCCATCGCTTCAGTTGGAGATATTGACCAAGATGGCTACATAGAT
TTCGCGGTCGGCGCTCCACAGGAAAAACCAAACGGAAAAGTCTACATTTTCCGAGGTTCC
GCCGACGGCAACGTAAAGCAGTCGCAGGTATTTAACGGAGCTAACTTTACCGATATCAAA
CCGGACGTCAAAGGCTTCGGCGTCTCATTGTCCGGTGCAGTGGATATTGACAATAATAAA
TATCCTGATCTTTTGGTCGGGACTTTATCCGACTATGTTGTGCTGCTACGGTCAAGACCA
GTTATCACAATCGAGTCAAGCCTTTCTGCAAGTCCCACTAGTTTGGATCTAAGAAATCCG
AACTGCACACTTGCTTCAAAGACATATTCTTGCTTCGAGCTTCAGTTTTGTTTCAGATAC
AATGCTCGACATAAGGAATACACGGAGATACTGCCAATACATTATAGCATAACGTTGGAC
AGTGAGCTTCAGAAAGAACGAAAGGCTGCAAGAGTGGCATTCGCTTCTCCCCAAGGACCA
AGCCTTATGAGTGACGTAGCCAATGTTCCAAGAGCCGGTCAATGGTATTGTCCTGGTGGG
AAGTACAAAGTTTTCTTCATCGGTTCTGAAGATCGTTTGCGACCAATCAAGATTGATTTT
GAGTTTAATCTTGCAAGTGAGATAAACGGTGTGAAAAGGGAGAGACCAGACCAACCAGTG
TTCAACATGATCAATGACCCGATCATGGACGCCGATTTTCCGCATGCCCGAACTTCTGTG
GTGAATCTTGCCAACAACTGTGGCGATGACGGTTGTCAGAGCAATCTCAAACTACGAGGT
TCAATTCCCCCTGAAGTCGTGGTCGGTCGAGACAGCAAAATGCTTCTTTCTCTCAATGTA
ACCAACGACGGTGAAGAGGCTCATCAAGCTGTTGTATCAGCTAAGCTCCCTGCTTGGGTT
TACTACGATAACTACACAGTAACTAGATCCTCTGGAGCCGAGATAGTGTGCACTACATCC
GACATAGGCGGTTCTACATTTGTTGTTTGCACTCTTGGGAATCCGTATGTTGAAGGCAGT
GCAGATACCATTGATATATTGTTAGACGTTCAACAACTAACTGCTGACACCAAACAGATT
GTGATTGAGGTGACAGGATCAACTACAAGCATAAACCCGGAGATCCCACCCACCCCACTC
TATTCCGACGTTATAATTCAAATGATGCTATCTCTATCCGGCTACGGCAAGCCTCAGCAG
GTTCGTTACGTCAATGCTCCAATAAAAGGAGAGTCGGCAATTCATTATACGAACGAGATT
GGACCGTTTGTTGAATATACGTTCACGGTGAAAAATGACGGACTACAGCTGGCAAACGGA
GTTCGTCTTATAGTGGATTTCCCTATTGAAATCAATAACGGTAAATGGTTAATGTACCTT
GTATCTGCCCATGTTCGATCTGGAGGTTTACAAATAGTTGGAGAATGTGAACAACAGTAC
CAAAACACTTTACATTTCAAATTACCTGTCACTGCGTCCGTCAGCGCAGCCAGGAGGACA
AAACGGGAGGCAAAAGCTTCAAGTTTGTATGAACCACGTCGCTTATCATCAACGCAGAGT
GGTTCGAATTTCGTGACACTTGACTGTCATGGAGATACTGCGAGATGCGTGAAAATCGGC
TGCACCTTAGATCCTATACAACCAGGGTCAACGACATCGGTTAACTTGCAAGCCAGGTTG
TGGAACAACACTTTCCTGGAGGAGTTTGTTGACATCGACTTAGTGAACGTTGCAGCTTCA
GCTACAGTTTCTAACATTGATAGCAACGTTCGAATCACTGGTTCGCCCACCCACGAGGCA
CTTACTACAGTGGATCACGCGTATTTTGAAGTGTCAGTCAAGTCTTCGTTCCCATGGTGG
TACATCCTTATCGGCATCCTAATTGCTCTCATCATTTACATTATTATCATTTACCTTCTA
ATCAAATGCGGATTTTTCAAGCGGAAGAAGTACCCCAGAAATCAACATCATGCGCAAGAC
GACAACGGTGCTGCAGTGGCTGAAGAAGAAAAGGAACCAACGAACAGAGAAACGGCAACG
TGATATCGCCGTGTGTATGGGATTATATAGGTTATTGGGGGCATTGCTTGACTCGTATTT
TAAACACATGTGAATGTGGTCCTTTATTACAGCCGCATGAGATAACATGTTGATGTTCGT
GATAGAATACTATTACACCGATGTTTTAAATTTATCAAACTTTGTCAACATTTTCAATTA
ATGACCGCGAACGGCACTTATTCAATCATTTCAACTGAGTTTTTTTTACTTAAATTGAAT
ATATTATTTAACCGCTTTAAAGTAAAGTATATATGGTCGTTTTTAAAACGTTTCTTTTGC
ATGCTTGGAAAGTATTTTACAATTTTAAAAAAACTTAGAAATGAAATTTTGTTTGGAGCA
TCTTTTTGTACGTAACTAACATAAAATTGAAATAAAAATTGGTAACACCTG
| Gene3D |
Integrin_alpha_N (IPR028994) - T[37-482] 6.2E-107 |
| ProSiteProfiles |
Int_alpha_beta-p (IPR013519) - T[41-111] 8.994 - T[117-182] 5.635 - T[244-300] 6.921 - T[305-368] 14.052 - T[369-426] 12.993 - T[432-493] 10.112 |
| SMART |
Int_alpha_beta-p (IPR013519) - T[51-118] 3.9 - T[254-307] 0.0013 - T[315-377] 4.4E-14 - T[379-433] 6.0E-17 - T[442-497] 29.0 |
| PRINTS |
Integrin_alpha (IPR000413) - T[255-267] 1.6E-53 - T[312-332] 1.6E-53 - T[382-406] 1.6E-53 - T[446-467] 1.6E-53 - T[472-491] 1.6E-53 - T[591-604] 1.6E-53 - T[1029-1048] 1.6E-53 |
| Pfam |
FG-GAP (IPR013517) - T[319-359] 6.6E-12 |
| Pfam |
Integrin_alpha-2 (IPR013649) - T[478-941] 1.5E-79 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[480-649] 7.85E-21 - T[649-773] 2.25E-20 - T[787-1022] 1.2E-39 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITA7_HUMAN | 31.282 % | 451 | 7.54E-140 |
| ITA6_HUMAN | 31.861 % | 487 | 4.6E-154 |
| ITA3_HUMAN | 29.211 % | 354 | 2.09E-105 |