- Transcript 'KH2012:KH.C1.129.v1....' >
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- Transcript 'KH2012:KH.C4.26.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C4.26.v2.A.SL5-1
Possible name(s)
ITGA3; ITGA6; ITGA7
Gene model
Location
KhC4 [2,220,728 / 2,237,832]
Amino acid sequence
Length: 1,083
>KH.C4.26.v2.A.SL5-1
NLKESITKKRFTISNKYKLSVMELTFLFSIAMLFSCTMGYNLEGRLPLYKSGGTNSTFGF
SVALHKLSIDPGSSLEKSLLVVGSPTAEALPSQTNAVKPGGIYHCPVSTNSEDCTRIAMD
LGESSRTNNKTGQWLGVSLKSQGAGKYLITCAHRHSMRLYSRVNEVERLCGKCFLLNGTD
ANGLTEITPSDVDNRFIGGPGMWSWTGGMFDIQMADLEATEALDIFTSSTAMYETLGCYK
NELDRGKVKCDNIPLRRDSYLGFSVASSNAIKPGETTYVAGAPRGNYTGAIVMYRKISDG
LSKSLAPILTDTILGEFIGSGFGFSVATIDVNGDGLDDLLVGAPQYYEYSNEGKHGGAVY
VYINQRGVAFSQITPKKLLGSLDSFFGYSIASVGDIDQDGYIDFAVGAPQEKPNGKVYIF
RGSADGNVKQSQVFNGANFTDIKPDVKGFGVSLSGAVDIDNNKYPDLLVGTLSDYVVLLR
SRPVITIESSLSASPTSLDLRNPNCTLASKTYSCFELQFCFRYNARHKEYTEILPIHYSI
TLDSELQKERKAARVAFASPQGPSLMSDVANVPRAGQWYCPGGKYKVFFIGSEDRLRPIK
IDFEFNLASEINGVKRERPDQPVFNMINDPIMDADFPHARTSVVNLANNCGDDGCQSNLK
LRGSIPPEVVVGRDSKMLLSLNVTNDGEEAHQAVVSAKLPAWVYYDNYTVTRSSGAEIVC
TTSDIGGSTFVVCTLGNPYVEGSADTIDILLDVQQLTADTKQIVIEVTGSTTSINPEIPP
TPLYSDVIIQMMLSLSGYGKPQQVRYVNAPIKGESAIHYTNEIGPFVEYTFTVKNDGLQL
ANGVRLIVDFPIEINNGKWLMYLVSAHVRSGGLQIVGECEQQYQNTLHFKLPVTASVSAA
RRTKREAKASSLYEPRRLSSTQSGSNFVTLDCHGDTARCVKIGCTLDPIQPGSTTSVNLQ
ARLWNNTFLEEFVDIDLVNVAASATVSNIDSNVRITGSPTHEALTTVDHAYFEVSVKSSF
PWWYILIGILIALIIYIIIIYLLIKCGFFKRKKYPRNQHHAQDDNGAAVAEEEKEPTNRE
TAT
Nucleotide sequence
Length: 3,756
>KH2012:KH.C4.26.v2.A.SL5-1
GGCTGCCGCTGCGACTGTCACACTATTGGATATATAACACTGTAAGCGTTGGTTTGAGAA
AGTTTACTGTAGAACTGAGGCGGAAATGAAACATAGAACTTGAAGGAATCAATAACCAAG
AAACGCTTTACAATTTCAAACAAGTACAAACTATCCGTCATGGAGTTAACTTTTCTCTTC
AGCATTGCTATGCTGTTCAGTTGTACTATGGGATATAATCTTGAAGGACGTTTACCTTTG
TACAAAAGTGGTGGGACCAACAGTACATTTGGATTCAGCGTTGCTTTACATAAACTTTCC
ATTGACCCAGGGAGTTCGCTGGAGAAAAGCTTGCTCGTGGTTGGTAGCCCTACAGCCGAA
GCCTTGCCAAGTCAAACAAATGCTGTGAAACCTGGTGGAATATACCACTGCCCAGTTAGT
ACTAACTCTGAAGATTGTACCCGAATAGCCATGGATTTGGGCGAATCCAGTAGAACTAAC
AACAAAACTGGGCAGTGGCTGGGCGTCAGTCTTAAAAGCCAAGGTGCGGGGAAGTACCTG
ATAACGTGCGCCCATAGACACTCAATGAGATTATATTCGAGAGTAAACGAAGTCGAAAGG
CTCTGCGGGAAGTGTTTTCTTTTGAACGGTACTGATGCGAACGGATTGACCGAAATCACA
CCGAGTGATGTAGACAACAGATTTATAGGTGGACCTGGTATGTGGTCATGGACAGGCGGG
ATGTTTGATATCCAGATGGCAGATCTGGAAGCAACGGAAGCTTTAGATATTTTTACATCT
TCTACGGCGATGTACGAGACGCTGGGCTGTTACAAAAACGAATTGGACCGCGGAAAAGTA
AAATGCGACAATATTCCGTTGCGAAGAGACAGCTATTTGGGATTTTCAGTTGCATCAAGT
AACGCAATTAAACCTGGAGAAACAACGTACGTGGCTGGGGCACCAAGGGGCAACTATACT
GGTGCCATCGTAATGTATCGAAAAATAAGCGATGGTCTTTCGAAAAGTCTTGCACCTATA
CTAACGGATACAATACTTGGCGAATTTATTGGATCCGGATTTGGTTTTTCAGTGGCGACC
ATTGATGTAAATGGAGACGGTCTGGACGATTTATTAGTTGGGGCACCGCAGTATTACGAG
TATTCGAACGAGGGAAAACACGGAGGCGCAGTCTACGTTTATATAAACCAACGTGGTGTA
GCTTTCAGTCAAATCACACCGAAGAAATTGTTGGGATCACTGGACTCTTTCTTTGGTTAT
TCCATCGCTTCAGTTGGAGATATTGACCAAGATGGCTACATAGATTTCGCGGTCGGCGCT
CCACAGGAAAAACCAAACGGAAAAGTCTACATTTTCCGAGGTTCCGCCGACGGCAACGTA
AAGCAGTCGCAGGTATTTAACGGAGCTAACTTTACCGATATCAAACCGGACGTCAAAGGC
TTCGGCGTCTCATTGTCCGGTGCAGTGGATATTGACAATAATAAATATCCTGATCTTTTG
GTCGGGACTTTATCCGACTATGTTGTGCTGCTACGGTCAAGACCAGTTATCACAATCGAG
TCAAGCCTTTCTGCAAGTCCCACTAGTTTGGATCTAAGAAATCCGAACTGCACACTTGCT
TCAAAGACATATTCTTGCTTCGAGCTTCAGTTTTGTTTCAGATACAATGCTCGACATAAG
GAATACACGGAGATACTGCCAATACATTATAGCATAACGTTGGACAGTGAGCTTCAGAAA
GAACGAAAGGCTGCAAGAGTGGCATTCGCTTCTCCCCAAGGACCAAGCCTTATGAGTGAC
GTAGCCAATGTTCCAAGAGCCGGTCAATGGTATTGTCCTGGTGGGAAGTACAAAGTTTTC
TTCATCGGTTCTGAAGATCGTTTGCGACCAATCAAGATTGATTTTGAGTTTAATCTTGCA
AGTGAGATAAACGGTGTGAAAAGGGAGAGACCAGACCAACCAGTGTTCAACATGATCAAT
GACCCGATCATGGACGCCGATTTTCCGCATGCCCGAACTTCTGTGGTGAATCTTGCCAAC
AACTGTGGCGATGACGGTTGTCAGAGCAATCTCAAACTACGAGGTTCAATTCCCCCTGAA
GTCGTGGTCGGTCGAGACAGCAAAATGCTTCTTTCTCTCAATGTAACCAACGACGGTGAA
GAGGCTCATCAAGCTGTTGTATCAGCTAAGCTCCCTGCTTGGGTTTACTACGATAACTAC
ACAGTAACTAGATCCTCTGGAGCCGAGATAGTGTGCACTACATCCGACATAGGCGGTTCT
ACATTTGTTGTTTGCACTCTTGGGAATCCGTATGTTGAAGGCAGTGCAGATACCATTGAT
ATATTGTTAGACGTTCAACAACTAACTGCTGACACCAAACAGATTGTGATTGAGGTGACA
GGATCAACTACAAGCATAAACCCGGAGATCCCACCCACCCCACTCTATTCCGACGTTATA
ATTCAAATGATGCTATCTCTATCCGGCTACGGCAAGCCTCAGCAGGTTCGTTACGTCAAT
GCTCCAATAAAAGGAGAGTCGGCAATTCATTATACGAACGAGATTGGACCGTTTGTTGAA
TATACGTTCACGGTGAAAAATGACGGACTACAGCTGGCAAACGGAGTTCGTCTTATAGTG
GATTTCCCTATTGAAATCAATAACGGTAAATGGTTAATGTACCTTGTATCTGCCCATGTT
CGATCTGGAGGTTTACAAATAGTTGGAGAATGTGAACAACAGTACCAAAACACTTTACAT
TTCAAATTACCTGTCACTGCGTCCGTCAGCGCAGCCAGGAGGACAAAACGGGAGGCAAAA
GCTTCAAGTTTGTATGAACCACGTCGCTTATCATCAACGCAGAGTGGTTCGAATTTCGTG
ACACTTGACTGTCATGGAGATACTGCGAGATGCGTGAAAATCGGCTGCACCTTAGATCCT
ATACAACCAGGGTCAACGACATCGGTTAACTTGCAAGCCAGGTTGTGGAACAACACTTTC
CTGGAGGAGTTTGTTGACATCGACTTAGTGAACGTTGCAGCTTCAGCTACAGTTTCTAAC
ATTGATAGCAACGTTCGAATCACTGGTTCGCCCACCCACGAGGCACTTACTACAGTGGAT
CACGCGTATTTTGAAGTGTCAGTCAAGTCTTCGTTCCCATGGTGGTACATCCTTATCGGC
ATCCTAATTGCTCTCATCATTTACATTATTATCATTTACCTTCTAATCAAATGCGGATTT
TTCAAGCGGAAGAAGTACCCCAGAAATCAACATCATGCGCAAGACGACAACGGTGCTGCA
GTGGCTGAAGAAGAAAAGGAACCAACGAACAGAGAAACGGCAACGTGATATCGCCGTGTG
TATGGGATTATATAGGTTATTGGGGGCATTGCTTGACTCGTATTTTAAACACATGTGAAT
GTGGTCCTTTATTACAGCCGCATGAGATAACATGTTGATGTTCGTGATAGAATACTATTA
CACCGATGTTTTAAATTTATCAAACTTTGTCAACATTTTCAATTAATGACCGCGAACGGC
ACTTATTCAATCATTTCAACTGAGTTTTTTTTACTTAAATTGAATATATTATTTAACCGC
TTTAAAGTAAAGTATATATGGTCGTTTTTAAAACGTTTCTTTTGCATGCTTGGAAAGTAT
TTTACAATTTTAAAAAAACTTAGAAATGAAATTTTGTTTGGAGCATCTTTTTGTACGTAA
CTAACATAAAATTGAAATAAAAATTGGTAACACCTG
| Gene3D |
Integrin_alpha_N (IPR028994) - T[40-485] 6.2E-107 |
| ProSiteProfiles |
Int_alpha_beta-p (IPR013519) - T[44-114] 8.994 - T[120-185] 5.635 - T[247-303] 6.921 - T[308-371] 14.052 - T[372-429] 12.993 - T[435-496] 10.112 |
| SMART |
Int_alpha_beta-p (IPR013519) - T[54-121] 3.9 - T[257-310] 0.0013 - T[318-380] 4.4E-14 - T[382-436] 6.0E-17 - T[445-500] 29.0 |
| PRINTS |
Integrin_alpha (IPR000413) - T[258-270] 1.6E-53 - T[315-335] 1.6E-53 - T[385-409] 1.6E-53 - T[449-470] 1.6E-53 - T[475-494] 1.6E-53 - T[594-607] 1.6E-53 - T[1032-1051] 1.6E-53 |
| Pfam |
FG-GAP (IPR013517) - T[322-362] 6.6E-12 |
| Pfam |
Integrin_alpha-2 (IPR013649) - T[481-944] 1.5E-79 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[483-652] 7.85E-21 - T[652-776] 2.25E-20 - T[790-1025] 1.2E-39 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITA7_HUMAN | 31.196 % | 451 | 6.12E-140 |
| ITA6_HUMAN | 31.861 % | 488 | 3.7E-154 |
| ITA3_HUMAN | 29.211 % | 354 | 2.49E-105 |