- Transcript 'KH2012:KH.C4.358.v1....'
Transcript Model
Transcript Id
KH2012:KH.C4.358.v1.A.SL2-1
Possible name(s)
THBS1; THBS2; THBS4
Gene model
Location
KhC4 [2,422,238 / 2,436,258]
Amino acid sequence
Length: 1,243
>KH.C4.358.v1.A.SL2-1
RAKMQIAWILAFLGLVAAARAVGLSAVNAFDLFSMTGISHKRSQPAYRRAITTDGSSPDH
FFPAYKFKRPLGPHALVATDDQFRLLSASLARIDTFYFSANMKQRMNNVGTLISISPTVS
TAQAVNTMAIVSDAPQDRLDLFYTVGEQNHVLTFTNVGIANSLKEWKNMTMEFSGYDVTL
YVNCRNVGTRRLESEFYRRLDAGSSRISLATAYENKDDFKGSLQNVRFRFGSRVEANPML
CDSQSTPSNIESNRSEFDPEFDVAPSRNAGPSHHDNVLPGSNTMARQFVLQVVQDSCELT
CRPPQGAKRPDDLEVFFSCMDATGMHKNGERWNVDDCVSCVCDGGHRLCSNQTCPLLHCL
NVTRVPGECCPKCQAETDGFSAWSSWSECSVTCGIGSQTRGRSCDRANFPCNGPTLENRN
CLRDPCKRRRDGGWSFWTRWAPCSVTCGRGRSTRIRECNAPIPELDGEECLGPDRQTKDC
REAPCAVNGGWGTWSPWKRCSVSCGTGFRTRKRKCNNPKPRYGGKACPGDKKEVGQCNTQ
NCPVDGCLASPCFGGVKCTSYDDGSFTCGSCPAGTQGDGINCQDIDECTLVADACFHYQG
VHRCQNHFPGYSCLPCPSGYRGDVQSGVGVIHARAHKQECVMSNPCTDGANPCPENAECI
FLGKTVSPPFICKCRPGYASCSHCDGLICADDTDLDGWADNEIVCPGSNTSVTCHEDNCP
RLPNSGQEDSDEDGEGDACDRDDDNDGIYDEQDNCQFIYNPYQSDVDRDGVGDMCDNCVH
DRNADQKDTDGNGEGDACSLDIDGDSIENIFDNCVYVYNFDQLDSDMDGVGDACDNCPLV
HNPAQEDRDSDKVGDSCDSNLDVDEDGIQNNLDNCPYIANANQADHDNDGLGDACDPDDD
DDGIPDDRDNCRLVVNPSQLDTDGNGRGDACEGDFDGDNIMDADDACPLNNKISVTDFRS
FDMIALDPEGIAQIDPNWVVRNKGKELIQTKNCDPGLAIGMDRFEAVDFSGTFFVNTEKD
DDYAGFVFGYQSSSKFYVVMWKQVSQTYWKNYPSRAHGYSAIQVKVVNSTSGTGEALRNA
LWHTGDTKNEVRTLWYDDMQQGWRDYTAYRWTLQHRPETGFIRVTMYEGKDLLVDSGALY
DKTFAGGRIGFFIFSQEMVFFSDMEYMCKGIKSYSLAIHVNGMRCGVTKLDELYKRWHVS
FATKTSTAFNTMGTKTAPRNRAFWHFSYLFMSLYFSRPDITLF
Nucleotide sequence
Length: 4,433
>KH2012:KH.C4.358.v1.A.SL2-1
AAACGCGTATATTGTATTTGAATAACTTTCTGTGACTTCTGACGCGCAAAAATGCAAATT
GCGTGGATTCTCGCTTTTTTAGGACTCGTCGCAGCCGCTCGAGCGGTCGGCCTGTCGGCG
GTAAATGCTTTCGACCTCTTTTCAATGACCGGCATCTCGCATAAGAGATCCCAACCTGCA
TACAGACGAGCTATAACTACGGACGGAAGCAGTCCAGATCATTTCTTTCCCGCATACAAA
TTCAAGAGGCCTCTCGGACCACATGCTCTGGTGGCAACCGACGACCAATTCCGGCTTCTT
TCAGCGTCTCTGGCTCGCATTGACACTTTCTACTTCAGCGCTAATATGAAGCAGAGAATG
AACAACGTCGGCACCCTTATTAGCATCTCTCCAACAGTGAGCACGGCACAAGCGGTCAAT
ACCATGGCGATCGTTAGTGATGCCCCACAAGACAGACTTGATCTCTTTTACACCGTTGGC
GAACAGAATCATGTTTTGACCTTCACAAATGTGGGTATCGCCAATTCACTGAAAGAATGG
AAAAACATGACCATGGAGTTCAGCGGTTACGATGTGACGCTGTACGTTAACTGCCGCAAC
GTTGGCACACGGCGTTTGGAGAGCGAGTTCTACAGGCGTCTGGATGCTGGCAGCAGCCGA
ATCAGTCTCGCAACTGCCTATGAAAACAAGGACGATTTTAAGGGATCTCTTCAGAACGTT
CGATTTCGATTTGGTTCGAGAGTTGAAGCCAACCCTATGCTCTGCGACTCGCAATCTACG
CCAAGCAACATTGAAAGCAACCGTTCAGAGTTTGACCCAGAGTTCGATGTAGCGCCGTCC
CGCAACGCGGGTCCTTCTCACCACGACAACGTTCTGCCTGGCAGTAATACCATGGCGCGC
CAGTTTGTGCTGCAGGTCGTCCAAGATTCTTGCGAGCTGACATGCCGCCCGCCGCAAGGA
GCGAAACGGCCGGACGACCTTGAGGTGTTCTTCTCTTGCATGGATGCCACAGGCATGCAC
AAGAACGGAGAGAGATGGAACGTTGACGACTGCGTGTCTTGCGTATGCGATGGTGGCCAC
CGGCTATGTTCAAACCAAACCTGCCCTCTTCTACACTGCCTCAATGTGACGAGAGTTCCC
GGAGAATGCTGCCCGAAATGTCAAGCTGAAACTGATGGGTTTTCTGCATGGTCAAGCTGG
TCGGAATGTAGCGTTACTTGCGGAATTGGAAGCCAGACAAGAGGCCGATCTTGCGACAGA
GCTAACTTTCCATGCAATGGACCAACGTTGGAAAACCGAAACTGCCTTAGAGACCCATGT
AAACGGCGCCGTGATGGAGGTTGGTCGTTTTGGACCAGATGGGCTCCATGCAGTGTAACT
TGCGGTAGAGGCAGATCCACCAGAATCCGTGAATGTAATGCACCAATTCCAGAGTTGGAC
GGTGAAGAATGTCTTGGACCTGACAGACAAACCAAAGACTGCAGAGAAGCGCCTTGTGCA
GTTAATGGCGGATGGGGTACCTGGTCACCATGGAAACGTTGTAGTGTTTCATGCGGAACA
GGGTTCCGCACGCGAAAGCGAAAGTGTAACAACCCGAAACCGAGGTACGGCGGAAAGGCG
TGCCCGGGAGACAAGAAGGAAGTCGGCCAATGCAACACACAGAATTGCCCAGTTGACGGT
TGTTTGGCGAGCCCTTGCTTCGGTGGTGTGAAATGCACTTCGTATGATGATGGTAGTTTC
ACTTGTGGTTCATGCCCGGCTGGAACTCAAGGAGATGGCATAAACTGCCAGGACATTGAC
GAGTGCACTCTGGTTGCCGACGCCTGCTTCCACTATCAAGGCGTTCATAGATGCCAGAAC
CACTTCCCAGGCTATTCATGTCTTCCCTGCCCGTCCGGATATAGAGGCGACGTTCAGTCT
GGAGTCGGCGTCATTCACGCCCGTGCCCACAAACAAGAATGCGTCATGTCCAATCCATGC
ACAGACGGGGCGAACCCCTGCCCAGAAAACGCGGAATGCATATTCCTCGGCAAGACCGTC
AGCCCACCATTCATTTGCAAGTGTCGACCAGGCTACGCGTCATGCTCACATTGCGATGGT
TTGATTTGTGCAGATGATACCGACTTAGATGGCTGGGCAGACAACGAAATCGTATGCCCA
GGCAGCAACACTTCAGTTACATGCCACGAGGATAACTGCCCTCGACTGCCGAATAGCGGA
CAAGAAGATTCGGACGAAGATGGTGAAGGCGATGCTTGCGACAGAGATGACGACAATGAT
GGCATATATGACGAACAGGATAACTGTCAGTTCATATACAACCCGTACCAATCTGATGTC
GACCGAGACGGTGTTGGAGACATGTGCGATAACTGCGTGCATGATAGGAATGCAGACCAA
AAGGATACCGATGGTAACGGCGAAGGAGACGCTTGCTCTCTTGATATTGACGGCGACTCC
ATCGAGAACATATTCGACAACTGTGTTTACGTTTACAATTTTGATCAACTCGATAGCGAC
ATGGATGGAGTTGGTGATGCATGTGACAACTGTCCTCTGGTACACAACCCGGCACAGGAG
GACCGAGATTCCGACAAAGTTGGCGACAGTTGCGACTCAAACTTAGACGTCGACGAAGAT
GGAATACAAAACAATTTAGACAACTGCCCATACATTGCAAATGCCAACCAAGCAGATCAC
GATAACGACGGTTTGGGCGACGCGTGTGATCCAGATGACGACGACGATGGTATCCCAGAT
GACCGAGATAACTGCAGATTGGTTGTCAACCCAAGCCAACTCGATACTGACGGTAACGGC
AGAGGCGACGCTTGTGAGGGCGACTTTGATGGTGATAATATCATGGATGCCGACGATGCT
TGTCCTTTGAATAACAAGATAAGTGTAACTGACTTCAGGAGCTTCGATATGATTGCTCTT
GACCCAGAAGGTATTGCACAAATTGATCCTAACTGGGTTGTGAGGAACAAGGGTAAAGAG
CTCATTCAGACCAAAAACTGCGACCCTGGACTCGCCATCGGAATGGACCGGTTTGAGGCG
GTTGATTTTAGCGGAACTTTCTTTGTCAACACTGAAAAAGATGACGATTACGCGGGTTTT
GTTTTCGGATATCAATCTTCCAGTAAATTCTACGTAGTCATGTGGAAGCAAGTATCTCAA
ACCTACTGGAAAAACTACCCATCACGTGCCCACGGATACAGTGCCATACAAGTCAAGGTT
GTTAACTCAACTTCAGGAACAGGCGAAGCTCTTAGAAACGCACTTTGGCACACCGGGGAC
ACGAAAAACGAGGTACGAACTCTTTGGTACGATGATATGCAGCAGGGCTGGAGGGATTAT
ACCGCTTACAGATGGACCTTACAACACAGACCAGAAACTGGTTTCATCAGAGTGACAATG
TACGAGGGAAAAGATCTTTTGGTTGACTCCGGCGCGTTATACGATAAAACATTTGCCGGG
GGAAGAATTGGATTCTTTATTTTCTCGCAAGAGATGGTGTTTTTCTCGGACATGGAATAC
ATGTGTAAAGGTATTAAATCTTACAGTTTAGCAATACACGTAAACGGAATGCGGTGTGGC
GTTACAAAACTAGATGAACTTTACAAAAGATGGCACGTCAGCTTCGCAACAAAGACCAGT
ACTGCTTTTAACACTATGGGAACGAAAACGGCGCCACGAAACCGAGCTTTTTGGCATTTT
TCTTACCTATTTATGTCTTTATATTTCTCTCGCCCAGATATTACCCTATTTTAGAACTGC
CACGAGAGGGCGGCAAGGAGCCTAGCAATCATTTTCAATATCGCCAAAGCTGCTCTGCTA
CTCGTTTTAAAGTGGTGGCTTGCCGTCGTCTACTACATGATTTCCACTGTATAATACAAC
GTATAACGTAGACTTCCACAAAGTGTAGCGCTCACATAACGACTTTGCATACAATGCACA
CACCAACCATCAGCCGTAAACATTTAGTGGAAAATTTGCTGAAACTCCAAATAGTAAACT
CCCTTTTCTATTATGTGACCCCCATAGTTGCTTAAACATACAACGATAGTGCCTTTTGGT
AATCCAGCGTTTTTACGAGCTTTACAATTGCGCCAAAATTATTTACAACAGACAGCAGTA
CGCCACTTGGAAACTCATTTTTAGTTAACATTTTCAGCATATGTCAATACCAATTTTCAT
TTTATGTTTAAATACTTTCTTCGTAAACTTTACTTCGTGTTTTATTCTGTTCCCGTCTAT
TTTCTATACTTGGACACACATGTAGTCTTGTACATTTTTCTACATACGAGTGTCACTTTA
GATTAGTGTCATATTTATTTTCTCGAATTTAAGTTGTCTCTTTGTACGTTTGTTCTTGAC
AGCTTTTAAGTTATAGTTACCGTGCGCTATATAATAAACCAACAAAACTGCGA
| PANTHER |
Thrombospondin (IPR037349) - T[4-427] 0.0 - T[429-459] 0.0 - T[469-516] 0.0 - T[518-1169] 0.0 |
| SMART |
Laminin_G (IPR001791) - T[23-232] 6.3E-5 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[29-237] 5.88E-21 - T[956-1169] 3.72E-104 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[317-374] 11.136 |
| Pfam |
VWF_dom (IPR001007) - T[319-373] 1.2E-7 |
| SMART |
VWF_dom (IPR001007) - T[319-373] 5.2E-7 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[337-373] . |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[377-426] 2.3E-10 - T[430-485] 1.0E-16 - T[486-542] 2.9E-19 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[378-426] 2.62E-10 - T[430-485] 1.44E-12 - T[487-540] 2.09E-15 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[378-427] 11.928 - T[431-486] 12.88 - T[488-543] 14.181 |
| SMART |
TSP1_rpt (IPR000884) - T[380-427] 2.1E-11 - T[434-486] 1.3E-12 - T[491-543] 1.4E-15 |
| Pfam |
TSP1_rpt (IPR000884) - T[381-426] 1.9E-11 - T[435-485] 1.1E-11 - T[493-542] 1.5E-11 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[543-583] 9.561 - T[642-682] 10.348 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[543-583] 0.021 - T[584-641] 5.5E-5 |
| SMART |
EGF-like_dom (IPR000742) - T[546-583] 0.11 - T[587-641] 36.0 - T[645-685] 0.037 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[678-775] 1.5E-21 - T[776-835] 2.0E-17 - T[836-956] 6.7E-45 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[691-776] 4.45E-11 - T[752-835] 1.83E-14 - T[833-954] 2.22E-35 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[691-727] 12.663 - T[728-763] 16.817 - T[764-786] 10.377 - T[787-822] 16.172 - T[823-845] 12.469 - T[846-883] 14.542 - T[884-919] 16.981 - T[920-955] 15.825 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[728-763] 2.2E-10 - T[787-822] 6.3E-10 - T[823-845] 6.6E-4 - T[846-883] 1.0E-12 - T[885-919] 2.8E-7 - T[921-953] 1.8E-8 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[959-1173] 96.272 |
| Pfam |
Thrombospondin_C (IPR008859) - T[973-1169] 5.6E-92 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 50.083 % | 1095 | 0 |
| TSP2_HUMAN | 49.958 % | 1080 | 0 |
| TSP4_HUMAN | 50.448 % | 589 | 0 |