Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.479.v1.A.nonSL5-1

Possible name(s)

COPS7A; EIF3M; VCL

Gene model

KH2012:KH.C4.479

Location

KhC4 [2,952,426 / 2,956,335]

Sequences

Amino acid sequence

Length: 377

>KH.C4.479.v1.A.nonSL5-1
SPINCTMSVPAFIDLSEADQISELQQYFKSKNIEVKEEGVLFNDVKQLIISTAELWKDTE
GKDIEGVVNSILSLLFVIPIDKGCELVDLLCEQLLRGAESGKAPVSLNLLHNLFHGYPTK
TPFLCKVYSTWLKLAKVSRSIHLVPTNLKELSSWLEDWNAGEEGRQNVLRLLYEAQLNCG
RNKEAAETMITLLQSYTEENAGKAREDAIRCITKALADPNTYLFNQLLTLKPVTFLEGEP
LHDLLNIFVSGNIKEYKDFYETNKEFIESIGLSHTSNTRKMQLLTLVDNFGSAREISFDD
IIARLDISEDDVEEFIIDAIQSKLMRGRIDHVNRKVIVSQACQRIFGRAQWESLASRLEQ
WRDNINRVNGKLQTLQV

Nucleotide sequence

Length: 1,311

>KH2012:KH.C4.479.v1.A.nonSL5-1
AGTTGATCACCAATAAACTGCACAATGAGTGTACCGGCTTTTATTGACCTTTCTGAAGCC
GATCAGATTTCAGAGCTTCAACAATATTTCAAAAGTAAAAACATTGAAGTGAAGGAAGAA
GGGGTTTTGTTCAATGATGTCAAACAACTTATTATTTCGACTGCAGAACTATGGAAAGAC
ACAGAAGGAAAAGATATCGAAGGAGTGGTAAACAGCATTCTTTCCTTGCTATTTGTTATT
CCAATCGACAAAGGATGTGAGCTTGTGGATCTTTTGTGTGAGCAATTGTTAAGGGGCGCT
GAAAGTGGAAAAGCACCTGTCAGTTTAAACTTATTACATAATCTGTTCCATGGTTATCCA
ACAAAAACTCCATTTCTCTGCAAAGTATATTCTACTTGGTTAAAACTTGCCAAAGTAAGC
AGAAGCATTCACCTCGTACCAACAAACTTGAAAGAATTATCTTCATGGTTGGAGGATTGG
AATGCAGGAGAAGAAGGTCGACAGAATGTGCTGAGACTTTTATACGAAGCACAATTGAAC
TGTGGGAGAAACAAGGAAGCTGCTGAAACAATGATCACTTTACTTCAATCTTATACCGAG
GAAAATGCTGGAAAAGCAAGAGAAGATGCCATTAGGTGCATAACGAAGGCATTAGCCGAC
CCAAACACATACTTGTTCAATCAACTACTTACTTTAAAACCTGTCACATTCTTAGAAGGT
GAACCTTTACATGATCTTCTCAACATCTTTGTGAGTGGAAACATCAAAGAATACAAAGAT
TTCTATGAAACAAACAAAGAATTTATTGAATCTATAGGTTTGTCCCACACAAGCAACACA
AGGAAAATGCAACTTCTAACATTGGTCGATAACTTCGGTTCAGCAAGAGAAATAAGTTTT
GATGACATCATAGCACGACTTGACATATCTGAAGATGACGTTGAAGAATTCATAATTGAT
GCCATTCAAAGCAAACTTATGAGAGGAAGGATAGACCATGTCAACCGTAAAGTGATTGTC
AGTCAAGCATGCCAGCGTATATTTGGACGCGCTCAGTGGGAATCCCTCGCCTCCCGTCTT
GAGCAGTGGAGAGATAATATCAACCGAGTTAACGGCAAACTACAAACATTACAAGTTTAA
AATAGATCTTAAGAATTACGTTTTGTTATTATAGTGCGAATATTTGCGTTTTGCGTGAAA
AGAAATAAGAATGTCTGGTGACATAAGTAATTATTGGATTATGTCGGATTTTTGATGCGA
ATTTATGTGGTGTTCCAATCATCTTATGCTAGAAATAAAGATGCAAACCCA

InterProScan

Hamap	eIF3m (IPR027528) - T[7-377] 21.868
Pfam	PCI_dom (IPR000717) - T[240-339] 3.5E-16
SMART	PCI_dom (IPR000717) - T[272-361] 4.6E-14
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[281-340] 1.07E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EIF3M_HUMAN	46.237 %	345	2.68E-117