Aniseed - Transcript Card

Transcript 'KH2012:KH.C4.584.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.584.v1.A.nonSL13-1

Possible name(s)

TMED3; TMED7; TMED7-TICAM2

Gene model

KH2012:KH.C4.584

Location

KhC4 [2,667,753 / 2,670,841]

Sequences

Amino acid sequence

Length: 172

>KH.C4.584.v1.A.nonSL13-1
DITKDTRATMEYQVISGGRYDVDCTIEDPDGLKLYSEKRKQYDSYAWDAQKTGAYQICFS
NEFSTITHKVIYFSMIVGDEKPLVDTMDRATALNQMETSCVTIHEGMKNVIASQTHFRLR
ESLGRVFAEGINTRVQIWSAIQVTIMIIVMVGQVFVLRGLFNTKKPFTRTDT

Nucleotide sequence

Length: 1,136

>KH2012:KH.C4.584.v1.A.nonSL13-1
GACATAACCAAAGACACTAGAGCAACGATGGAGTACCAGGTTATAAGTGGTGGGAGGTAC
GATGTGGATTGCACCATTGAAGACCCTGATGGTTTGAAGTTATATTCGGAGAAACGAAAA
CAATATGATTCTTACGCGTGGGATGCACAGAAGACTGGTGCATACCAGATTTGCTTCAGC
AACGAGTTTTCAACCATCACCCACAAAGTAATTTACTTTTCCATGATAGTTGGTGATGAG
AAACCACTTGTTGATACCATGGACAGAGCAACTGCATTAAACCAGATGGAGACATCGTGT
GTTACAATACACGAAGGGATGAAGAACGTAATTGCCTCGCAAACTCATTTCCGATTACGT
GAATCTCTTGGTCGAGTATTCGCCGAAGGAATTAACACAAGGGTGCAGATTTGGTCTGCA
ATTCAAGTCACCATCATGATCATTGTAATGGTTGGCCAAGTATTTGTGTTAAGAGGACTC
TTTAATACCAAGAAACCATTCACAAGAACAGACACATAGCATTGCCCTGCACACTAATAA
AGCTAGATATAAATTGTAGCAACACATAATGGTGAAGCATCACAAGTGTTAGACCATAAA
CTATTTTAAATTTTCCACACATCTCAATTCTGTTTATTTTTATTGCAAATTCCCTGTAAA
ATCTTGAAAACGTAACTAGAAATGTGTTTTACTTTATTCCCGGTTGTTTATTCTATTTAT
TTCCACTTTTGTTGTGCCTATTATAGTCGTAGCTAGGGGTGTTATGAAATATAGGTACCC
TGTTTGTCACACTTTACTGAAAAGTTTTATTCCCACCATATATTACCCAGAGTTAGTTTG
ACAAAAGATTTTGTGTCTCTAACATTCACAAGCACTTTGGCACCTACCGACAAAGTTTTT
AACATTTTTTGTGGAGAATCATGAAGCAAGTTGAATGTTGAAAAGGTTGCAATTTTATGT
TGTAATAAAAATGAGTCCTGTGTTATCTAGACGCTTACAATCATATTTTTGACAAAAAAA
TTCTAAACTTTTTCGGTTTTGAAAAGTATTTCAGTTTTGAAAAGGGATTTTCTGTTCTGA
TAAGTAAGTAAAATGTTTGTGTTTGTTCATTAAATACTAAACAGATGGTCGTTTTA

InterProScan

PANTHER	TMED7 (IPR015718) - T[1-165] 6.1E-66
SMART	GOLD_dom (IPR009038) - T[1-162] 1.5E-41
ProSiteProfiles	GOLD_dom (IPR009038) - T[1-77] 15.575
PANTHER	TMP21-related (IPR015720) - T[1-165] 6.1E-66
Pfam	GOLD_dom (IPR009038) - T[1-161] 9.1E-36
SUPERFAMILY	GOLD_dom_sf (IPR036598) - T[2-82] 2.75E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TMED2_HUMAN	28.049 %	93.6	2.67E-24
TMED7_HUMAN	54.545 %	205	7.25E-68
TMED3_HUMAN	49.412 %	191	2.33E-62