Aniseed - Transcript Card

Transcript 'KH2012:KH.C4.584.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.584.v1.A.nonSL2-1

Possible name(s)

TMED3; TMED7; TMED7-TICAM2

Gene model

KH2012:KH.C4.584

Location

KhC4 [2,667,695 / 2,670,841]

Sequences

Amino acid sequence

Length: 191

>KH.C4.584.v1.A.nonSL2-1
YGVELTYELEDNSKQCFFQDITKDTRATMEYQVISGGRYDVDCTIEDPDGLKLYSEKRKQ
YDSYAWDAQKTGAYQICFSNEFSTITHKVIYFSMIVGDEKPLVDTMDRATALNQMETSCV
TIHEGMKNVIASQTHFRLRESLGRVFAEGINTRVQIWSAIQVTIMIIVMVGQVFVLRGLF
NTKKPFTRTDT

Nucleotide sequence

Length: 1,194

>KH2012:KH.C4.584.v1.A.nonSL2-1
TTATGGCGTGGAGCTTACTTACGAACTCGAAGACAATTCGAAACAATGTTTCTTTCAGGA
CATAACCAAAGACACTAGAGCAACGATGGAGTACCAGGTTATAAGTGGTGGGAGGTACGA
TGTGGATTGCACCATTGAAGACCCTGATGGTTTGAAGTTATATTCGGAGAAACGAAAACA
ATATGATTCTTACGCGTGGGATGCACAGAAGACTGGTGCATACCAGATTTGCTTCAGCAA
CGAGTTTTCAACCATCACCCACAAAGTAATTTACTTTTCCATGATAGTTGGTGATGAGAA
ACCACTTGTTGATACCATGGACAGAGCAACTGCATTAAACCAGATGGAGACATCGTGTGT
TACAATACACGAAGGGATGAAGAACGTAATTGCCTCGCAAACTCATTTCCGATTACGTGA
ATCTCTTGGTCGAGTATTCGCCGAAGGAATTAACACAAGGGTGCAGATTTGGTCTGCAAT
TCAAGTCACCATCATGATCATTGTAATGGTTGGCCAAGTATTTGTGTTAAGAGGACTCTT
TAATACCAAGAAACCATTCACAAGAACAGACACATAGCATTGCCCTGCACACTAATAAAG
CTAGATATAAATTGTAGCAACACATAATGGTGAAGCATCACAAGTGTTAGACCATAAACT
ATTTTAAATTTTCCACACATCTCAATTCTGTTTATTTTTATTGCAAATTCCCTGTAAAAT
CTTGAAAACGTAACTAGAAATGTGTTTTACTTTATTCCCGGTTGTTTATTCTATTTATTT
CCACTTTTGTTGTGCCTATTATAGTCGTAGCTAGGGGTGTTATGAAATATAGGTACCCTG
TTTGTCACACTTTACTGAAAAGTTTTATTCCCACCATATATTACCCAGAGTTAGTTTGAC
AAAAGATTTTGTGTCTCTAACATTCACAAGCACTTTGGCACCTACCGACAAAGTTTTTAA
CATTTTTTGTGGAGAATCATGAAGCAAGTTGAATGTTGAAAAGGTTGCAATTTTATGTTG
TAATAAAAATGAGTCCTGTGTTATCTAGACGCTTACAATCATATTTTTGACAAAAAAATT
CTAAACTTTTTCGGTTTTGAAAAGTATTTCAGTTTTGAAAAGGGATTTTCTGTTCTGATA
AGTAAGTAAAATGTTTGTGTTTGTTCATTAAATACTAAACAGATGGTCGTTTTA

InterProScan

PANTHER	TMED7 (IPR015718) - T[3-184] 8.9E-75
PANTHER	TMP21-related (IPR015720) - T[3-184] 8.9E-75
SMART	GOLD_dom (IPR009038) - T[4-181] 2.4E-57
Pfam	GOLD_dom (IPR009038) - T[5-180] 5.1E-42
SUPERFAMILY	GOLD_dom_sf (IPR036598) - T[13-101] 3.79E-21
ProSiteProfiles	GOLD_dom (IPR009038) - T[14-96] 18.851

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TMED2_HUMAN	27.841 %	104	2.11E-28
TMED7_HUMAN	55.249 %	230	2.57E-77
TMED3_HUMAN	51.064 %	218	1.13E-72