Aniseed - Transcript Card

Transcript 'KH2012:KH.C5.109.v1....'

Transcript Model

Transcript Id

KH2012:KH.C5.109.v1.A.SL2-1

Possible name(s)

AC113404.3; RAP1A; RAP1B

Gene model

KH2012:KH.C5.109

Location

KhC5 [2,174,033 / 2,184,578]

Sequences

Amino acid sequence

Length: 194

>KH.C5.109.v1.A.SL2-1
FIFSDPGDKGLVMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEAEN
QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITSQASFNDLTDLREQILRVKDTDE
VPMILVGNKCDLEDERIVTREQGELLSRQWHCSFMETSARTKINVENAFFELVKQINSKQ
PPPVTKESCCCNIL

Nucleotide sequence

Length: 1,824

>KH2012:KH.C5.109.v1.A.SL2-1
ACCATTATAATTACAGAGCTTGTAGTTTTGTGTATACTGTTGGACTGTTGTAAGTAGCTG
TTGTATGTTAAGCGCCATAATTACACAAGAAAGAAAAGAGATTAATTTAAGGTTAGTAAG
GTTAATTGAATGTTGAAACATTTGTATAATTTGGTACAAACCCCATTATTGATGTGGATG
CCAATACGTTTAAGCTGTGCTGTGTGTAATGGGTTTTGTAATTAATTATTAGATATGGCT
GTGCCGGTACAAGAGTATGATTTACTGTCACAGGATTCTGGGTGTTTTTTTTCTTCAGTT
TTTAAACAAAGCATTTTTCATGTCTGTTTGATTTAAGCTGTTGGTGTAGTGGTTAAGAGG
AACTTTTTATTTTTAAGGAACTGATACTTGTGGAGTTGTGGTTAGTAGGCCCACTGTCTT
CCTTTGTTGGTTCATAACAGCAATACTTGTGAATAAACCCTTTACCATTCAGTCTGCGCA
ATATGACAATTCTTTATAAGATCTCAGCAAGCAAAATAGGAAATAACACTTTTTACATAT
CTATTTTAAAACAGATTTGGTTCATTGACATTGTTTAAAAAATAACATGTACGACCAAGG
CGTGCAAAACTAAAAGTTTGTAAAAAAAATTGCGCTACACCGATCATACTCAGCAGACGG
TTTAACAATTCTCTATTGAAAACCCTTTTCAAAAAGTTTATGTATATATATGTGTATATA
TAAATTTTTAAATATTGATTTATCTTTTCAGATCCCGGTGACAAAGGTCTAGTAATGAGG
GAATACAAGCTTGTTGTGCTTGGCTCTGGGGGTGTGGGGAAAAGTGCACTGACAGTTCAA
TTTGTCCAAGGAATCTTTGTGGAGAAATACGACCCCACCATTGAGGACAGCTATAGAAAA
CAAGTTGAGGCAGAAAACCAGCAATGTATGCTTGAAATTCTTGATACTGCTGGAACGGAA
CAATTCACGGCAATGCGAGATCTGTACATGAAGAATGGGCAAGGGTTTGTGCTTGTGTAC
AGCATCACATCTCAAGCCTCGTTTAATGATCTCACTGACTTAAGGGAGCAGATATTAAGA
GTAAAAGATACTGATGAGGTTCCCATGATATTAGTTGGAAACAAATGCGATTTGGAAGAC
GAGAGGATTGTAACAAGAGAGCAAGGGGAACTGTTATCTAGGCAGTGGCATTGCTCCTTC
ATGGAGACTTCAGCCAGGACCAAAATCAATGTTGAAAATGCATTCTTCGAATTAGTCAAA
CAAATCAATTCAAAACAACCACCCCCTGTAACCAAAGAAAGCTGTTGTTGCAATATTCTA
TAGAAATCTTTAGCATTATTCCCTGTGACGTCATAATGGAGTAGTATGACGCAAGAATCC
CCCAACTCTGCTTGTATAAAGAGCCCTCCTACAACGACCACAAAGGGTTATATTTTCGCC
TCTTTATTTCCTATACGAGCAAGTACGCATTTCCCTTTGCTGTTTTATTGCATATAACGT
CGTTTAACCTTGCTGTTATCCAACCTAAGTAACTCTTTTTTTTCATCACTTTAAATTAAC
TCCTTCGCCTAGAAAATAGTTTTAGAAAATCTCATATTTTCATTTGTAACCTTGAACCTA
GTCGAATAACACAGCGTAAGTTCTATTGCATTCTAATAGTGTTGCATTTTAACGCGTAGC
GGTGCCACAACTGCTGCATTCTTCGCCTTAGATTTGGTTTCAAATTAGACGGTAGAATCT
TTTAACCCACTCCTAAAATATGCTTTTAATTCCGAGTTGAATGTAACGATTTGTACATAA
ATAAATAAAGTACCGGCCTTATAA

InterProScan

ProSiteProfiles	Small_GTPase_Ras (IPR020849) - T[11-194] 44.264
TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[13-169] 7.9E-33
PANTHER	Small_GTPase_Ras (IPR020849) - T[13-185] 2.8E-97
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[14-176] 2.44E-53
Pfam	Small_GTPase (IPR001806) - T[17-177] 1.1E-57

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAP1B_HUMAN	79.558 %	299	3.98E-105
RAP1A_HUMAN	81.765 %	291	5.34E-102
RP1BL_HUMAN	78.453 %	294	3.76E-103