Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C5.109.v3.A.SL1-1

Possible name(s)

AC113404.3; RAP1A; RAP1B

Gene model

KH2012:KH.C5.109

Location

KhC5 [2,174,049 / 2,184,578]

Sequences

Amino acid sequence

Length: 192

>KH.C5.109.v3.A.SL1-1
DPGDKGLVMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEAENQQCM
LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITSQASFNDLTDLREQILRVKDTDEVPMI
LVGNKCDLEDERIVTREQGELLSRQWHCSFMETSARTKINVENIFFDLVKQINRKTPEPK
KKKKKNSGCIVL

Nucleotide sequence

Length: 1,952

>KH2012:KH.C5.109.v3.A.SL1-1
AGCTTGTAGTTTTGTGTATACTGTTGGACTGTTGTAAGTAGCTGTTGTATGTTAAGCGCC
ATAATTACACAAGAAAGAAAAGAGATTAATTTAAGATCCCGGTGACAAAGGTCTAGTAAT
GAGGGAATACAAGCTTGTTGTGCTTGGCTCTGGGGGTGTGGGGAAAAGTGCACTGACAGT
TCAATTTGTCCAAGGAATCTTTGTGGAGAAATACGACCCCACCATTGAGGACAGCTATAG
AAAACAAGTTGAGGCAGAAAACCAGCAATGTATGCTTGAAATTCTTGATACTGCTGGAAC
GGAACAATTCACGGCAATGCGAGATCTGTACATGAAGAATGGGCAAGGGTTTGTGCTTGT
GTACAGCATCACATCTCAAGCCTCGTTTAATGATCTCACTGACTTAAGGGAGCAGATATT
AAGAGTAAAAGATACTGATGAGGTTCCCATGATATTAGTTGGAAACAAATGCGATTTGGA
AGACGAGAGGATTGTAACAAGAGAGCAAGGGGAACTGTTATCTAGGCAGTGGCATTGCTC
CTTCATGGAGACTTCAGCCAGGACCAAAATCAATGTTGAAAATATTTTTTTCGACCTAGT
GAAACAAATCAACCGAAAAACACCAGAACCTAAGAAGAAAAAGAAGAAAAACTCTGGTTG
TATTGTTTTGTAACCTTACCCTAACCAGCTCGGTGTCCTTACTTGTGATTGGTTAGTTCG
TCCCTTGTTTCCGCCAATCACGTTCGAACCGTCTAAACAACATCTCGTGACCGACGGTTC
CGCATCACCGAGCCATCCAATAAGCAAGCGACATCGTTTAGCACGAAGCAAGCATTGCTT
CACTTTTACCTTTTTTCATTTTTTCCATAGATTTGCTTTGAAACGGATGGGCTTTAGTTT
AATCATTATTTCGCAGTGTTTCGCTCTCACACCAGGGGAACCACCGCTACGTATCTAACA
CAACAATAACTAAACCCATAGTAAATAATTCTTCGTATTTATTATTTTGTGTTAAAACCG
CACCACCGACCGAATGACGTCATGAGTTGCCCGCACCAGTTTTTGTGTGCGTTACGTCAC
GAATAATTATGACGTCGCAAATGAACAGAATTGCATAATTTCAGCAATTACTCGTTTGGA
TTTAATTTTTCCGTTATAATTCGAATTGGTAAAATCTTCATATTTCGGCCCGGGCAATTC
GTAACAAAATATCCGCATGCGCTCATAAAGACACCGCTACCCTCCCCAACCCCCGACTGC
CATGGTGCTTAGGATGAACTGTGGTTCGCTTGGTGAATTAATTTATTTGTCGGATCGTGT
GAAACCTTTAATCGCATCTAATCTATTAAGCAGAAAGCGTAAAATCATTAACTTAATGAT
TTCGTCCGCATAACCCCTTCAACCTTCTATAGTTTGATCAGTGTTTTGTACATATACCTT
TGTGACGTCACACTTGACCATTTCCACCCATAGTGACGTCATAATGGAGTAGTATGACGC
AAGAATCCCCCAACTCTGCTTGTATAAAGAGCCCTCCTACAACGACCACAAAGGGTTATA
TTTTCGCCTCTTTATTTCCTATACGAGCAAGTACGCATTTCCCTTTGCTGTTTTATTGCA
TATAACGTCGTTTAACCTTGCTGTTATCCAACCTAAGTAACTCTTTTTTTTCATCACTTT
AAATTAACTCCTTCGCCTAGAAAATAGTTTTAGAAAATCTCATATTTTCATTTGTAACCT
TGAACCTAGTCGAATAACACAGCGTAAGTTCTATTGCATTCTAATAGTGTTGCATTTTAA
CGCGTAGCGGTGCCACAACTGCTGCATTCTTCGCCTTAGATTTGGTTTCAAATTAGACGG
TAGAATCTTTTAACCCACTCCTAAAATATGCTTTTAATTCCGAGTTGAATGTAACGATTT
GTACATAAATAAATAAAGTACCGGCCTTATAA

InterProScan

ProSiteProfiles	Small_GTPase_Ras (IPR020849) - T[7-192] 45.031
PANTHER	Small_GTPase_Ras (IPR020849) - T[9-192] 2.2E-104
TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[9-165] 8.1E-33
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[10-172] 4.4E-53
Pfam	Small_GTPase (IPR001806) - T[13-173] 2.1E-57

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAP1B_HUMAN	82.778 %	313	8.56E-111
RAP1A_HUMAN	84.118 %	301	6.79E-106
RP1BL_HUMAN	81.667 %	308	6.51E-109