Aniseed - Transcript Card

Clone 'cign060f20' >
Transcript 'KH2012:KH.C5.109.v6....'

Transcript Model

Transcript Id

KH2012:KH.C5.109.v6.A.SL2-2

Possible name(s)

AC113404.3; RAP1A; RAP1B

Gene model

KH2012:KH.C5.109

Location

KhC5 [2,174,033 / 2,179,632]

Sequences

Amino acid sequence

Length: 175

>KH.C5.109.v6.A.SL2-2
FIFSDPGDKGLVMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEAEN
QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITSQASFNDLTDLREQILRVKDTDE
VPMILVGNKCDLEDERIVTREQGELLSRQWHCSFMETSARTKINVENVSIFLFQS

Nucleotide sequence

Length: 1,445

>KH2012:KH.C5.109.v6.A.SL2-2
ACCATTATAATTACAGAGCTTGTAGTTTTGTGTATACTGTTGGACTGTTGTAAGTAGCTG
TTGTATGTTAAGCGCCATAATTACACAAGAAAGAAAAGAGATTAATTTAAGGTTAGTAAG
GTTAATTGAATGTTGAAACATTTGTATAATTTGGTACAAACCCCATTATTGATGTGGATG
CCAATACGTTTAAGCTGTGCTGTGTGTAATGGGTTTTGTAATTAATTATTAGATATGGCT
GTGCCGGTACAAGAGTATGATTTACTGTCACAGGATTCTGGGTGTTTTTTTTCTTCAGTT
TTTAAACAAAGCATTTTTCATGTCTGTTTGATTTAAGCTGTTGGTGTAGTGGTTAAGAGG
AACTTTTTATTTTTAAGGAACTGATACTTGTGGAGTTGTGGTTAGTAGGCCCACTGTCTT
CCTTTGTTGGTTCATAACAGCAATACTTGTGAATAAACCCTTTACCATTCAGTCTGCGCA
ATATGACAATTCTTTATAAGATCTCAGCAAGCAAAATAGGAAATAACACTTTTTACATAT
CTATTTTAAAACAGATTTGGTTCATTGACATTGTTTAAAAAATAACATGTACGACCAAGG
CGTGCAAAACTAAAAGTTTGTAAAAAAAATTGCGCTACACCGATCATACTCAGCAGACGG
TTTAACAATTCTCTATTGAAAACCCTTTTCAAAAAGTTTATGTATATATATGTGTATATA
TAAATTTTTAAATATTGATTTATCTTTTCAGATCCCGGTGACAAAGGTCTAGTAATGAGG
GAATACAAGCTTGTTGTGCTTGGCTCTGGGGGTGTGGGGAAAAGTGCACTGACAGTTCAA
TTTGTCCAAGGAATCTTTGTGGAGAAATACGACCCCACCATTGAGGACAGCTATAGAAAA
CAAGTTGAGGCAGAAAACCAGCAATGTATGCTTGAAATTCTTGATACTGCTGGAACGGAA
CAATTCACGGCAATGCGAGATCTGTACATGAAGAATGGGCAAGGGTTTGTGCTTGTGTAC
AGCATCACATCTCAAGCCTCGTTTAATGATCTCACTGACTTAAGGGAGCAGATATTAAGA
GTAAAAGATACTGATGAGGTTCCCATGATATTAGTTGGAAACAAATGCGATTTGGAAGAC
GAGAGGATTGTAACAAGAGAGCAAGGGGAACTGTTATCTAGGCAGTGGCATTGCTCCTTC
ATGGAGACTTCAGCCAGGACCAAAATCAATGTTGAAAATGTGAGTATTTTTTTATTTCAG
TCTTAACTTGTTTACATCTAAGTCAATTTCACTTTTTAATTTTTTAAAAGCGCCAAACAA
AATGTTTTTCAAGATTTTTATAGATTTTTATTATCTTTTTAACTATAACTTAAGATATTT
TTGGTAGATGGTTTTTGTACAGCTAATGCATACATCCACAAATGTATAGTTTTCGATAAA
AAAGT

InterProScan

ProSiteProfiles	Small_GTPase_Ras (IPR020849) - T[11-175] 41.177
TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[13-168] 1.7E-32
PANTHER	Small_GTPase_Ras (IPR020849) - T[13-168] 2.6E-91
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[14-172] 2.12E-51
Pfam	Small_GTPase (IPR001806) - T[17-168] 1.2E-54

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAP1B_HUMAN	84.076 %	279	1.82E-97
RAP1A_HUMAN	83.439 %	276	3.78E-96
RP1BL_HUMAN	82.803 %	274	1.85E-95