- Transcript 'KH2012:KH.C5.141.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.141.v1.A.SL1-1
Possible name(s)
PAPD4; ZCCHC11; ZCCHC6
Gene model
Location
KhC5 [3,882,336 / 3,901,891]
Amino acid sequence
Length: 1,431
>KH.C5.141.v1.A.SL1-1
TCYGKDAVKMQPSQVNSEHSSLNSGAPRGKLTQAAKFQTKSSSPSSTKQTTPKCSNGGKN
KSMETSGSGKKADSMNGKWHVPKPGVGSVTCNLEEHLEATSNGRVYDKPNVAHEEANRNG
KMNAAYDNVKMNQQNQNPVNGKNKMIQHNETTKTVNTVHKEADDAKPTELGISAKIKKKR
NKKKRDKLPATSPDPLIQAGNEILKLVNSGVNKNQNTPPTPSVDCSETPKIHQKKVVPST
PTISPGMEKLGLKQAEARLSRDYIFTLEKKSEDFPHAKFVCKLCNYHLDNVPLAHKHIKE
KRHQKALKERQQDNILRELSLPSPPAINNLQKVLLTEVVAEVMSESDVQLRTNTVQDLEQ
LISTHIPKSRVVLYGSSCSGFGFTSSDVNVDLQYPSTMRAPAALLKVLSLLQDSETYQDV
NADFLGKNPRINFTDQKSSLNISLSTGNESSILTSRLLRFYSLLDPRVIQLSMVFRKWAK
MCRLDLQSEGSLPSHAFIIMTIFFMQRHKYIPALHEVWLNLYTMKTIISKFQTDSDAETN
TTLENCISESPDSNIELDSPLSGAQEPVKPSPIQPNNPVNLMGGLEGKQLLVADLWLAMI
KFFALEYPMEDQIICICTSRTLLRSDKNWSRKRVAIVDPFSSKRNLCRSMTQQAVFGYMM
SRLKAAVTYFYASRAQNDTPQVSCGNHDVNDNTPSTSNGGTGLSQLYTFVYIYSIEEQLD
EVVPKICDMAIHSVLDEVAEDTTRYEFTNKVITGGHYPVKVCVLCKNEGHVRKDCPDEAK
VMDLVELPPITKSLLNALDRVCNYMYENFALRQKEVQERNKICEALMNYIQRKYNFKCQM
NLFGSSRNGFGFRRSDLDICMTFYGNATGEDLDFVSIITDVAKCLRRNSDLCNILPITTA
KVPIVKFEHKMSGLEGDISLYNLLAQKNTAMLSCYSSIDCRCKVLGYAMKVFVKRCQIGD
ASRGSLSSYAYTLMVIFYLQQRKPPVLPVLQQLYEGSEQPVDTIDGWNAWFNSDVKALKD
IWPEFGKNKESIGELWHNMLRFYTEEFDFRHHVVCIRKHEPLTVFEKEWTSKFISIEDPF
DLNHNLGAGVSRKMSNFIMRVFVKARQHFANLPPKNMDPIHEPEYFFDANILMDGEEAPN
DRCCRVCGKIGHFVRDCPRKKRRRGQDNGQQEVKDMNEYRCFLCGEFGHIKKDCPEYNND
SNFTGQNKFFRGSSPRNSDFQQRNFQSPKYKMSPHQNNKRNNSHTPGSRDTRRSSPPPHP
SHRSNETRAKMNLFPPPAQERSIESSPRFVQSSPKQIPDKRRTPNKQWPSSPHTQQSPVY
HQPPSASTQGYHGSPYNVIPYNNGVYGGSPYNTGMPDHGKDPHRDQMGNGTQYLNNPAMV
QGRNRNMAYSPMHPLLSPMMNDGQQMSPGSRTPMGSSPHKQQRHHNRRNQK
Nucleotide sequence
Length: 4,750
>KH2012:KH.C5.141.v1.A.SL1-1
GACTTAATACTGTGTAGTCTGCTAAATACTATTGTATGCATGTGGAAATTATAGTAGTAT
AATTTGCACTAAACATGCTACGGGAAGGACGCGGTAAAAATGCAACCATCACAAGTCAAC
AGTGAACACAGTTCTCTAAATTCGGGTGCTCCTCGTGGGAAACTAACCCAAGCAGCAAAA
TTCCAAACCAAAAGTAGTTCACCATCTTCTACCAAGCAAACTACTCCGAAATGCTCAAAC
GGGGGAAAAAACAAATCAATGGAGACTTCTGGTAGTGGAAAGAAAGCGGATAGTATGAAT
GGTAAATGGCATGTCCCTAAACCTGGGGTTGGCAGTGTGACTTGTAACTTGGAAGAACAT
CTAGAAGCAACGAGTAATGGCAGGGTATATGATAAACCTAATGTGGCTCATGAAGAAGCT
AATAGAAATGGAAAGATGAATGCAGCATATGACAATGTTAAAATGAATCAACAAAATCAA
AATCCAGTAAATGGGAAAAACAAAATGATTCAGCATAATGAAACTACTAAGACAGTGAAC
ACAGTACACAAAGAAGCAGATGATGCTAAACCAACAGAACTGGGTATCAGTGCCAAAATC
AAGAAAAAAAGAAATAAGAAAAAGCGTGACAAGCTACCAGCTACAAGTCCAGACCCGCTA
ATTCAAGCAGGTAATGAGATTCTGAAACTAGTGAACAGTGGTGTAAATAAGAACCAAAAC
ACTCCACCAACTCCAAGTGTGGATTGCTCTGAAACACCAAAAATCCATCAGAAGAAAGTG
GTTCCATCTACACCCACCATTTCCCCTGGTATGGAAAAACTTGGTTTGAAACAAGCAGAA
GCTCGGCTTAGTAGAGATTATATATTTACACTGGAAAAGAAATCTGAAGACTTTCCCCAT
GCAAAGTTTGTATGTAAACTGTGCAACTATCACCTTGATAATGTACCTCTTGCACACAAG
CACATTAAGGAGAAAAGGCATCAGAAGGCACTGAAGGAAAGACAGCAGGACAACATATTA
CGTGAGCTCTCCCTTCCTTCCCCCCCTGCCATCAACAACCTACAGAAGGTCTTACTTACT
GAGGTAGTAGCTGAAGTAATGAGTGAAAGTGACGTACAACTACGCACTAACACAGTGCAA
GACCTTGAACAACTTATCAGCACTCATATACCAAAGTCACGTGTTGTGTTATATGGTTCA
TCATGCAGTGGGTTTGGTTTTACATCAAGTGATGTGAATGTTGATCTACAATACCCATCC
ACCATGCGTGCTCCTGCTGCCTTGCTTAAAGTTCTTTCACTTCTTCAAGATTCAGAGACT
TACCAAGATGTGAATGCGGATTTTCTCGGAAAGAATCCTCGGATTAATTTCACGGATCAA
AAATCATCACTTAACATCTCTTTAAGCACGGGGAACGAATCGAGCATCCTGACAAGTCGT
CTGCTACGTTTCTACTCCCTGCTTGACCCCAGAGTAATTCAGTTAAGCATGGTGTTTCGT
AAATGGGCAAAAATGTGTCGACTTGATCTACAAAGTGAGGGTTCCCTACCATCCCATGCA
TTCATCATTATGACCATCTTCTTCATGCAAAGGCACAAATATATACCAGCTCTACATGAG
GTATGGCTAAATCTGTATACTATGAAAACAATTATTTCAAAATTTCAAACAGACTCGGAC
GCTGAAACAAACACGACACTCGAGAATTGCATATCTGAATCTCCAGATAGCAATATTGAG
CTTGATTCGCCACTATCAGGCGCTCAAGAGCCCGTCAAGCCGTCCCCCATACAACCCAAC
AACCCTGTTAACCTTATGGGAGGGTTAGAGGGAAAACAATTGCTTGTTGCTGATTTGTGG
TTGGCCATGATAAAGTTCTTTGCATTGGAGTATCCTATGGAAGACCAGATCATATGCATC
TGCACAAGTCGAACCCTGCTTAGATCAGATAAGAATTGGAGCAGAAAAAGGGTTGCAATT
GTTGATCCTTTCTCTTCCAAGAGAAATCTATGTCGTTCTATGACTCAACAGGCAGTGTTT
GGGTACATGATGTCCCGGTTAAAAGCAGCCGTGACTTACTTCTATGCTTCACGTGCACAA
AATGATACACCGCAAGTATCATGTGGCAATCATGATGTGAATGATAACACTCCATCTACT
AGTAATGGTGGTACAGGTTTGTCTCAGTTGTATACGTTTGTTTATATATATAGTATAGAG
GAACAACTGGATGAAGTTGTTCCAAAAATTTGTGACATGGCAATCCACTCTGTGCTTGAC
GAAGTTGCTGAGGATACTACAAGGTATGAGTTTACTAATAAAGTGATAACTGGTGGACAC
TACCCCGTCAAAGTTTGTGTCCTGTGCAAGAATGAGGGGCATGTTCGCAAGGATTGTCCC
GATGAAGCTAAAGTTATGGACCTTGTGGAACTACCACCTATAACCAAGTCTCTACTAAAT
GCACTGGATCGTGTATGCAACTATATGTATGAAAACTTCGCATTGAGGCAGAAGGAAGTC
CAGGAAAGAAACAAAATATGTGAAGCACTTATGAATTACATACAACGCAAATACAACTTC
AAATGTCAGATGAATTTATTCGGTTCTTCAAGAAATGGTTTTGGTTTTCGTCGTAGTGAC
CTTGATATTTGTATGACTTTCTATGGGAATGCTACAGGAGAGGATTTAGACTTCGTGTCC
ATCATCACTGATGTTGCGAAGTGTCTTCGTAGGAATTCCGATCTTTGCAACATCCTCCCA
ATCACCACAGCTAAAGTCCCGATCGTAAAGTTCGAGCACAAGATGAGTGGCTTGGAGGGA
GACATAAGTTTATACAACTTACTGGCACAAAAGAACACAGCTATGTTATCCTGTTATTCT
TCCATTGATTGTCGATGCAAGGTGCTCGGGTATGCCATGAAAGTTTTCGTGAAGCGGTGT
CAGATTGGTGATGCTTCACGAGGCTCATTATCATCATATGCATACACACTCATGGTCATA
TTCTATCTGCAACAGAGGAAACCTCCAGTGCTGCCAGTTTTACAACAGTTATACGAAGGT
AGTGAACAACCTGTAGATACAATAGATGGTTGGAATGCCTGGTTCAACAGTGATGTCAAA
GCTTTGAAAGATATCTGGCCCGAGTTTGGCAAGAACAAGGAATCCATCGGCGAGCTGTGG
CACAATATGCTTCGCTTCTATACAGAGGAGTTTGACTTCAGACACCATGTTGTGTGTATA
AGAAAGCATGAACCATTGACTGTGTTTGAAAAGGAATGGACTTCCAAGTTTATTTCAATT
GAAGATCCGTTTGATTTGAACCATAACCTTGGTGCTGGTGTATCGCGCAAGATGAGCAAC
TTTATCATGCGTGTGTTTGTGAAAGCAAGGCAACACTTTGCCAACTTACCACCGAAAAAT
ATGGATCCTATTCATGAACCTGAATATTTCTTCGATGCCAACATCCTCATGGATGGAGAG
GAAGCTCCCAATGACCGATGTTGCAGAGTTTGTGGGAAGATCGGACACTTTGTACGAGAC
TGTCCCAGGAAGAAAAGAAGAAGAGGACAAGATAATGGGCAACAAGAAGTAAAGGATATG
AATGAATACAGATGTTTCTTATGTGGAGAATTTGGACATATTAAGAAAGATTGCCCAGAG
TATAACAATGATAGTAACTTCACAGGACAAAACAAATTTTTCCGTGGTTCTTCACCAAGA
AACTCTGACTTTCAACAAAGGAACTTTCAATCTCCCAAATACAAGATGTCTCCTCACCAG
AATAATAAGAGGAACAATTCCCATACACCTGGTAGCAGAGACACAAGAAGAAGTAGCCCC
CCACCCCACCCCAGCCATCGATCAAATGAAACTCGTGCAAAGATGAATCTATTTCCACCT
CCTGCTCAGGAAAGATCGATCGAGAGCAGTCCACGTTTCGTGCAATCATCACCAAAGCAA
ATTCCTGATAAGAGGCGGACACCAAACAAACAGTGGCCTTCCTCCCCCCACACCCAGCAA
TCTCCTGTATACCACCAACCACCATCTGCATCTACACAAGGTTACCATGGATCTCCATAC
AATGTGATTCCTTATAATAATGGAGTGTATGGTGGATCGCCATACAATACTGGGATGCCT
GATCATGGTAAAGATCCTCACCGTGACCAGATGGGCAATGGAACACAATATCTCAACAAC
CCGGCAATGGTGCAGGGCAGAAACCGTAACATGGCATACAGTCCTATGCACCCTCTACTA
TCGCCGATGATGAACGACGGTCAGCAGATGTCGCCCGGCAGCCGTACCCCAATGGGGAGC
TCTCCCCACAAGCAGCAAAGGCACCATAACCGTCGCAACCAGAAATAAGACCCACGACAA
GCGTCCTTTATCGTCTCGTAAAGTTTTATCCCCGCTTACATTAGTGTTGTTTGGTGATTA
TTTTTTCATCACTTTTTAGGATGCAATTTAGCGCGCAACATTTTCTTCGAACACCTTTGG
TTTTATGTTTTCTTGTGGTTCTAGCTATCGTCTGCCACTTGTTTTGCTTCCAAGACGTTT
TATTCTTTTAAACTTTTAGCGCCGCACCCTGAGACGGGTAAGCTTGAAATCTGAAAACAG
ATTTCTGTATTTTGTTTTAAAATAAATTGATTTAGACCAATGTGGTTGCTGTTTATCAGC
TGCAATAGGTTTCCATCCGGTTTTGTAAGCCAATATGATTTTTTTGCAATATAAAACTGT
GGTTGGCAAA
| Pfam |
PAP_assoc (IPR002058) - T[592-642] 7.6E-5 - T[1031-1084] 6.6E-14 |
| SMART |
Znf_CCHC (IPR001878) - T[761-777] 0.027 - T[1143-1159] 0.0061 - T[1180-1196] 4.4E-5 |
| ProSiteProfiles |
Znf_CCHC (IPR001878) - T[762-777] 8.812 - T[1144-1159] 9.851 - T[1180-1196] 10.576 |
| SUPERFAMILY |
Znf_CCHC_sf (IPR036875) - T[1136-1198] 7.23E-9 |
| Pfam |
Znf_CCHC (IPR001878) - T[1143-1158] 0.001 - T[1181-1196] 9.3E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TUT4_HUMAN | 45 % | 527 | 4.63E-161 |
| TUT7_HUMAN | 57.212 % | 499 | 6.89E-152 |
| GLD2_HUMAN | 30 % | 141 | 2.13E-35 |