- Transcript 'KH2012:KH.C5.240.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.240.v1.B.SL1-1
Possible name(s)
LRP4; LRP6
Gene model
Location
KhC5 [4,561,610 / 4,572,221]
Amino acid sequence
Length: 1,173
>KH.C5.240.v1.B.SL1-1
QIAFRLRVFMFANSKMRKHLSLSLPRFVFLCVVCLAVTLLGTEAERRQDCVDGPSTWYRG
THNTTVTGTACQRWTATVPHRPKYIPQDGGEHNYCRNPDGDLKGTWCYTMNVSSRWEYCN
IPKCFDDSLVIWTNYDAQSQSTHLLSVMADPEVVKNKTDTSGVFNVSVMVGSNKTHTEFW
ALAGHYAEKKLFFTDYRSEYVGVRYIRRNITARYYKGMAHGIESMAYDWKANNLYWTDSE
FKWIMASDRTFRYYSPVFRTGHREPPYGLAIHSKLRKLYFSTYKAFGSKIMVTDLAGKNP
QTLFQFPDVFDVTGLTVDYTDERLYWTDFTGYGAMVMSSRMDGTNKTQIYYRQGSIFWGV
AAYMDYLYVTDVHARYTNTANKYYSVWVVIKQSKQVFRYTLHGKPRGIAVLSHNEERSMD
EVSTNGECDDQPTCDHICLPRINATRECVCSLGYHKRGDTSCITDVQSDESMFFVDSGQG
KIFQIPFNAMTSTHPNNYTIVPTGTRTNTETVAVDIKTRQLLWSDKRRKQILRGSFDGAR
GVTLVQSIHASSMTVDPQTGNIFFVDDEFNSIYVVDHSGNKMTELMRSNSNETDIKMIAQ
DVKSRYLYWTDTRSDEGAGQVWRIRLDGSEKELVLDNLDWPHAITVDHIRGSLFVSEAKT
AMIFEIPLSTLVGTINSTSIQNIPLQHDLAGQLPRLRFYILDIKVYNNYVYFVDGKSNRM
ERFNLTRGVASITQFGPSEFFRITNLAVYSSTYQKQFFNSLPSPCTGRQSRCRHICVAKS
DFESVCLCPEGSAHVTETLCSATTSTNRPPRLISCQEHSIIWLPSCASTAMFSWTAPVWT
DEEPTSNLTVVGPTRTSDNLGPGNHVFTYRATDSGGLSSTCRITVDVRNRSCVAPPPLPP
QLSSTTPTCGNRYGSTFVISCVDRTKSIRQGGASGELLGFTVTNLCLPEGSWDLGDMNQL
TCVPTPGQPTTTTTTSTTTTRATINTNTPPQTRTTTTTRATINTNTPPQTRTTTTTRATI
NTNTLPQTRTTTTTRATINTNTLPPTTTTTTTSRNIGPARRPTITTIPIRLITTTSTTAG
TPAKSSTTSPNNGTRLLAGPRSAKKGGLKSGPLAAIIVLVVLLVIVIAVVVFVTFRNRPV
WKVTRFQFPVFWKNKEDDVEVNPVSDNPYSVIS
Nucleotide sequence
Length: 4,269
>KH2012:KH.C5.240.v1.B.SL1-1
ACAAATAGCTTTTAGGTTGCGAGTTTTTATGTTTGCAAACTCGAAGATGAGGAAACATCT
AAGTCTCAGTTTGCCACGTTTCGTTTTCCTCTGTGTGGTTTGCCTAGCAGTGACGTTGTT
GGGAACAGAAGCAGAAAGAAGACAAGATTGCGTGGACGGACCGAGTACATGGTACAGAGG
CACCCATAACACTACAGTCACCGGTACAGCTTGTCAACGGTGGACTGCTACAGTCCCACA
TCGGCCCAAGTATATTCCTCAAGACGGAGGTGAACACAATTACTGCAGAAATCCTGACGG
AGATTTGAAGGGTACATGGTGTTATACAATGAACGTATCGTCCCGTTGGGAGTATTGCAA
CATTCCAAAATGCTTTGATGATTCCCTTGTAATTTGGACGAACTACGACGCCCAAAGCCA
GTCTACGCATTTACTGTCAGTCATGGCGGATCCAGAGGTTGTGAAAAACAAGACTGACAC
TTCAGGCGTCTTCAACGTGTCTGTCATGGTCGGTTCCAATAAAACACATACCGAGTTCTG
GGCTCTTGCAGGACATTACGCAGAAAAGAAGCTTTTCTTTACAGACTACAGGTCAGAGTA
CGTTGGTGTGCGGTACATTCGACGAAATATAACGGCCAGGTACTACAAGGGCATGGCGCA
CGGTATTGAAAGCATGGCATATGACTGGAAAGCAAACAACCTGTACTGGACAGATTCCGA
ATTCAAATGGATCATGGCATCCGACAGGACGTTCCGTTATTACTCTCCAGTTTTCAGAAC
TGGCCACAGAGAACCACCTTATGGCTTGGCAATTCACTCTAAATTGAGAAAACTCTACTT
CTCTACCTACAAAGCTTTTGGGTCCAAAATCATGGTTACTGACTTGGCAGGAAAGAATCC
ACAAACTTTATTCCAATTTCCTGACGTATTTGACGTTACTGGCCTCACTGTCGACTACAC
AGACGAAAGGTTGTACTGGACTGACTTTACCGGTTATGGAGCAATGGTCATGAGTAGTAG
GATGGATGGAACAAACAAAACACAGATCTATTACCGTCAAGGATCAATCTTCTGGGGAGT
AGCAGCGTATATGGATTATCTTTACGTGACGGACGTGCATGCCCGGTACACTAACACCGC
AAACAAGTACTATTCCGTGTGGGTGGTTATTAAACAGTCTAAGCAGGTATTCCGCTACAC
ACTACACGGAAAACCACGAGGTATTGCAGTGCTCAGCCACAACGAAGAACGCTCCATGGA
TGAAGTATCAACTAACGGAGAATGTGATGATCAGCCGACATGCGACCACATTTGCTTGCC
AAGGATAAACGCTACGAGAGAATGTGTCTGCTCCCTGGGATACCATAAGAGAGGCGATAC
ATCATGCATCACAGATGTTCAATCGGACGAGTCTATGTTCTTCGTGGACTCCGGCCAAGG
AAAAATCTTTCAAATTCCTTTTAACGCCATGACAAGCACCCACCCCAACAACTACACAAT
AGTTCCAACAGGAACAAGGACCAACACAGAGACTGTAGCAGTGGACATCAAAACGAGACA
GTTATTGTGGTCAGATAAAAGAAGGAAACAAATTCTAAGAGGAAGCTTTGATGGTGCAAG
AGGAGTTACTCTAGTTCAAAGCATACACGCAAGCAGTATGACCGTTGACCCACAGACTGG
GAACATATTCTTTGTCGACGATGAGTTTAATTCAATCTACGTTGTGGACCATAGTGGTAA
CAAGATGACAGAACTTATGCGATCGAATTCCAATGAAACCGACATTAAGATGATCGCACA
AGATGTTAAAAGCAGGTATTTGTACTGGACTGACACGAGAAGCGATGAGGGAGCAGGTCA
AGTATGGCGAATCCGTTTAGATGGTTCAGAGAAAGAATTGGTCCTGGATAACTTGGACTG
GCCTCACGCAATCACAGTTGATCATATAAGAGGCAGTCTGTTTGTGAGCGAAGCTAAGAC
TGCGATGATATTCGAAATTCCGCTGTCAACACTCGTAGGAACCATAAACTCAACATCTAT
TCAGAACATTCCTCTGCAGCACGACCTCGCAGGGCAGCTTCCACGACTTCGCTTTTACAT
TTTAGACATCAAGGTATACAACAACTATGTTTACTTTGTTGACGGGAAGTCAAACCGTAT
GGAGCGTTTCAATTTGACAAGAGGGGTGGCTTCGATTACCCAGTTTGGCCCATCAGAGTT
TTTCCGTATCACTAATCTTGCCGTGTATAGTTCAACCTACCAGAAACAATTTTTCAATAG
CTTGCCGTCACCCTGTACAGGTCGTCAAAGTAGATGTCGACACATATGTGTTGCCAAGTC
AGACTTTGAGAGCGTTTGTCTGTGTCCGGAAGGATCCGCTCATGTTACTGAAACGCTGTG
TAGCGCCACTACATCCACAAATCGACCACCACGTTTGATTTCGTGCCAAGAACATTCAAT
TATTTGGCTACCCAGTTGTGCTTCAACAGCAATGTTTTCATGGACAGCACCCGTTTGGAC
GGACGAAGAACCTACGTCCAATTTAACTGTGGTGGGACCAACCCGAACCAGCGATAACTT
GGGACCCGGCAATCATGTGTTTACTTATAGAGCAACCGATAGCGGTGGCCTTTCCTCTAC
TTGTAGAATCACTGTAGATGTACGAAACAGATCCTGTGTCGCCCCACCTCCCTTACCCCC
GCAGTTAAGTTCAACCACTCCCACATGCGGCAACCGTTATGGTTCTACGTTTGTGATTTC
CTGCGTGGATCGAACTAAATCTATTCGACAAGGAGGCGCTAGTGGGGAACTTTTAGGGTT
TACAGTGACGAACCTATGTCTTCCTGAAGGCTCATGGGATCTGGGTGACATGAACCAGTT
AACATGTGTCCCAACACCAGGGCAACCGACCACCACCACCACAACATCAACAACAACTAC
TAGAGCAACAATAAACACGAACACACCACCTCAGACAAGAACAACAACAACTACTAGAGC
AACAATAAACACGAACACACCACCTCAGACAAGAACAACAACAACTACTAGAGCAACAAT
AAACACGAACACACTACCTCAGACAAGAACAACAACAACTACTAGAGCAACAATAAACAC
GAACACACTACCACCGACAACAACAACAACAACAACAAGCCGAAATATTGGTCCAGCTAG
ACGTCCAACCATTACAACTATTCCAATCCGTTTGATAACAACTACTTCGACCACTGCAGG
TACACCAGCGAAATCAAGCACTACAAGTCCAAACAACGGCACTCGTCTTTTAGCAGGACC
AAGATCGGCCAAGAAGGGGGGTCTGAAGAGTGGTCCGTTGGCTGCTATCATTGTGCTTGT
AGTTCTACTGGTCATTGTAATCGCCGTCGTAGTCTTCGTCACATTTCGAAATCGTCCAGT
TTGGAAAGTCACTCGCTTCCAGTTCCCTGTATTCTGGAAAAACAAGGAAGACGACGTCGA
AGTGAACCCAGTGTCGGACAACCCTTACTCAGTAATCTCTTAAAACAACCTCAAGTCTTG
TACTGCAGTAACAATACTGCGAACGAACAAACCGATTGTATACCAAAAACTATAAACACT
TTTCCGACACTCCTTGGTGATTCAAGCGACCGAGAAGAACAGTTCAATAAGTTTGCACGA
TCGGCATCATTGCCTTTATATTCAAACGGTTCACCGGACATTTCAAATCAAAGTATAGCT
AACGGAACCGACCTTGATAGCATTAGAAAATCTCCCCCTTAATTAAAACCTGATTACTGA
AAGATATGTCAAAATGCGCACAGTGCACCCCAGGCTGCCAAAACGCGCACGCTGCCCGAG
CAAGTTCATACAGTACAACCGTTACACCCTCTGCAATTTTTTTTACGTTATTTCTTTGTA
TAGGTGGGTTATGTACTGTTATATACCGTGTGATGCCAACGTTTTCTATGCGACCAATCT
AACTAATGTCTGTAAATTTGTTTGCTGGACGTTGCTTTCTTCTTTTACGATGTACTTTTT
CCTTCATATTTTGTATAAGTGCCTTAAGATACTAACACAGCCCAAACTTGAACGAATATA
AATAAACTGGTCGCTGTAATTTATACACATTATTTTGTTATTCTTTTACATTGACATATT
TTTTCTCTAAGCTTAGTCCCCATATACAACGAAGTATAAAATGTTATCGACTGTTGCTTT
TGGAAACAGAAACTTAAGTTACGTTTGACGCGAAAGATAAATCGTGCATATATTTAGATG
AAGCAACAA
| SUPERFAMILY |
Kringle-like (IPR013806) - T[29-128] 3.87E-28 |
| Gene3D |
Kringle_sf (IPR038178) - T[34-132] 3.5E-28 |
| SMART |
Kringle (IPR000001) - T[48-126] 1.9E-25 |
| ProSiteProfiles |
Kringle (IPR000001) - T[49-124] 23.336 |
| Pfam |
Kringle (IPR000001) - T[50-124] 2.7E-19 |
| ProSitePatterns |
Kringle_CS (IPR018056) - T[94-107] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[133-462] 3.9E-45 - T[463-807] 2.7E-46 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[189-231] 4.308 - T[232-275] 7.812 - T[276-321] 6.258 - T[322-366] 8.3 - T[519-547] 7.418 - T[560-604] 5.608 - T[605-650] 12.593 - T[708-725] 4.703 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[212-252] 5.8 - T[255-300] 4.0 - T[301-346] 7.8E-6 - T[498-541] 0.49 - T[542-582] 0.21 - T[585-631] 3.5 |
| SMART |
EGF-like_dom (IPR000742) - T[427-463] 0.21 - T[764-801] 34.0 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[605-648] 5.1E-6 |
| ProSiteProfiles |
HYR_dom (IPR003410) - T[805-889] 13.879 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 22.669 % | 116 | 6.78E-26 |
| LRP4_HUMAN | 21.163 % | 122 | 7.49E-28 |
| LRP6_HUMAN | 24.126 % | 135 | 4.21E-32 |