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- Transcript 'KH2012:KH.C5.338.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.338.v1.A.ND1-1
Possible name(s)
LRP1; LRP1B; LRP4
Gene model
Location
KhC5 [4,593,164 / 4,600,866]
Amino acid sequence
Length: 796
>KH.C5.338.v1.A.ND1-1
MFNSANGTTEIQQFPADPEIVSQNNPSRRISKNVLHTSTRQNSEYWALATDSVGGRVFFA
DYKSELLGVYYVNQNRSETHYGGMAHGVESMTFDWQNQNLYWSDSGMKAIMVSEVTNFTR
YTIIQQSSNSVPYGIALHATKRLLFYALYKRQGARLVVTDLAGKNPRVLQRYPDVADITG
LTVDYEDDRHSTHNVGRYRFASKPRGIGIYSKFVEYSNTGLNTTLGSCGSSTPQCDHICL
PRINATRECACSLGFTRINDVNCVQKPLIGTDALLMVDYGQGKIFQLPINQSGSYNFSIV
DLGTQPNAYAMDIDMGTDTLYWFDRKNSTIFKTSLRSTSNSQAIVTNVAVRTMAVDQLSG
KVYFAESDTEFIKVYDPYKDLTFTVMRVPIERENVSQINSMAFDAKNGTNGELWRMRADG
SEKRAVLTRLNWPYGVFISYERNSLFFTEARMGEILEYSLDSMNQSSPQHVNVFAVNSNL
ARSRPFFISMVVLGDMVYFYDLAKHYVEQFNLTMGVTPTTQFGPTIFFKGREMMLYNRDY
YNRYIGPLSNPCGRNTSNACSEFCFNINNQTVCNCQDGSSLLGSVCVDNVGRTDNPPRTV
EPCPVDTEIQLPLCESTVPFSWNQISWVDDYTPDSRLRKNTWTKRNFRIFKFTPTNRCMF
VWPPRTTAPTTTPSPTTTTPPTTTTPPTTTPTTTTSTTTTTTTTTNTQTTDGTSATNTKQ
PVNSANKSSQALTGGAKAGIAIAVIFLFIALVIGILLVLRNQGNRSILPRMFWKQRSPDA
IYLEDNPNHNSYSVLH
Nucleotide sequence
Length: 2,826
>KH2012:KH.C5.338.v1.A.ND1-1
ATGTTTAACTCCGCTAATGGTACAACGGAAATACAACAGTTTCCAGCTGACCCGGAAATC
GTGAGTCAAAATAATCCGTCAAGAAGAATTTCAAAGAACGTACTACATACATCTACACGA
CAAAACAGCGAATATTGGGCTTTGGCGACCGACTCAGTGGGAGGCCGAGTGTTTTTTGCT
GACTATAAGTCTGAACTTCTTGGAGTTTATTATGTCAATCAAAACCGATCAGAAACACAC
TACGGAGGAATGGCACACGGAGTAGAAAGCATGACGTTTGACTGGCAGAATCAAAACCTT
TACTGGAGCGATTCGGGAATGAAAGCAATTATGGTGTCTGAAGTTACTAACTTCACACGT
TACACGATAATTCAGCAGTCAAGCAACAGTGTTCCATATGGAATTGCTTTGCATGCCACT
AAAAGATTGCTGTTTTACGCACTATACAAACGTCAAGGGGCTCGGCTTGTGGTCACTGAC
TTGGCAGGGAAGAATCCACGCGTATTGCAACGATACCCAGACGTTGCGGATATTACTGGT
CTTACAGTAGACTACGAAGACGACAGACACAGCACACATAATGTTGGACGATACCGGTTT
GCTTCAAAGCCAAGAGGAATTGGAATTTACAGCAAATTTGTTGAATATTCAAATACAGGA
CTAAATACCACACTCGGTTCATGTGGAAGCAGTACGCCACAATGTGATCACATATGTCTA
CCGAGGATCAACGCCACACGAGAATGTGCGTGTTCTTTGGGCTTCACCCGAATCAATGAC
GTAAATTGTGTTCAAAAACCACTTATTGGCACCGATGCGTTACTAATGGTGGACTACGGA
CAAGGAAAGATATTTCAATTACCAATCAATCAGTCTGGGTCGTATAACTTCAGCATCGTT
GATCTAGGTACACAGCCCAACGCATACGCAATGGATATCGATATGGGAACAGACACTCTG
TATTGGTTCGATCGAAAAAACTCAACTATTTTTAAAACTTCATTGCGATCTACATCCAAT
TCTCAAGCAATCGTGACCAATGTTGCAGTTCGAACCATGGCAGTGGATCAACTGAGTGGG
AAAGTATACTTCGCCGAATCTGACACCGAGTTTATAAAAGTGTATGACCCGTATAAAGAT
CTAACTTTCACAGTGATGAGGGTGCCTATAGAGAGGGAGAATGTATCCCAAATAAACTCG
ATGGCATTTGACGCGAAAAATGGAACAAACGGAGAGTTGTGGAGAATGCGTGCGGATGGC
TCAGAAAAGCGAGCAGTGTTAACTCGGCTTAATTGGCCGTACGGCGTATTCATAAGTTAC
GAACGAAACAGCTTGTTTTTTACCGAAGCAAGAATGGGAGAAATCTTAGAATATTCGTTA
GACTCAATGAATCAAAGCTCGCCACAACATGTTAATGTTTTCGCTGTTAACTCAAACTTA
GCAAGGAGCAGACCTTTCTTTATCAGCATGGTAGTACTTGGCGACATGGTTTATTTCTAC
GATCTAGCAAAACATTACGTTGAGCAGTTCAACTTGACAATGGGAGTAACACCAACAACC
CAGTTTGGACCCACAATATTTTTCAAAGGACGGGAGATGATGTTGTACAACAGAGATTAT
TACAACCGTTATATAGGGCCGTTAAGTAACCCCTGCGGAAGAAACACATCAAACGCATGT
TCTGAGTTTTGCTTCAACATAAATAACCAAACAGTTTGCAACTGTCAAGACGGTAGCAGT
CTTCTAGGATCAGTGTGTGTAGACAATGTTGGACGTACAGATAATCCCCCAAGAACTGTG
GAGCCATGTCCCGTAGATACAGAAATACAGTTACCATTATGTGAAAGCACTGTGCCGTTC
AGTTGGAACCAGATAAGCTGGGTGGATGATTATACGCCTGACTCAAGACTGAGAAAAAAC
ACCTGGACAAAACGTAACTTTCGCATCTTCAAGTTCACCCCAACTAACCGTTGCATGTTT
GTTTGGCCACCAAGAACGACAGCACCTACAACAACGCCTTCACCTACAACAACGACACCA
CCTACAACAACGACACCACCAACAACAACACCAACAACGACGACATCAACCACTACTACA
ACAACAACAACAACTAATACACAAACTACAGATGGAACTAGTGCAACCAACACTAAGCAA
CCTGTCAACTCTGCAAATAAGTCATCACAAGCGTTAACCGGTGGGGCAAAAGCTGGAATC
GCTATAGCGGTGATATTTCTATTCATTGCTTTAGTGATAGGAATACTGTTGGTATTGCGC
AATCAAGGCAATAGAAGTATTTTGCCACGAATGTTTTGGAAACAGAGAAGCCCCGATGCA
ATTTACTTAGAAGACAATCCTAATCATAATAGCTATAGCGTATTGCATTAGAGTGTATGT
GATGCATAACACTACCAGAGATGTACTTCTAAGACCAGAGACTCTGGAACTATAAGTTAG
ATCAGATTCCATGCACTATAAATTCAATACAAGTTTTTAAACCTAACATATTGTAGGGTG
GAGGAAGATGGGATATCTTTAGCGCATAATATCCAAATATCCTGATCGTGATTAAAACAA
TTAACAATGGTCTATGGAAGTCGTGAAAATACGGTTTTATAATTCTTCGAATGTTCATCG
TTTACTACCAAACGGGACGATAAATAGAATGAAACAGTGTCCCATCTTCTCCCACCCTAC
TATATGGTTTGACAATTTCGTACGTTCTCTAAATTCGTATTTAATACTATCAGTATCCGT
AATTTATACTACGACATACATTCATAAAAATTCTTTAAAAGCAATAACACTTGAATGCAA
AAATAC
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[12-225] 1.2E-24 - T[269-587] 1.7E-34 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[36-77] 38.0 - T[78-120] 4.1E-4 - T[121-166] 6.5 - T[296-340] 17.0 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[55-97] 4.912 - T[98-141] 11.107 - T[142-187] 5.585 - T[318-359] 7.255 - T[400-442] 4.958 - T[769-796] 5.005 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[225-263] 3.45E-7 - T[540-588] 3.45E-7 |
| SMART |
EGF-like_dom (IPR000742) - T[227-264] 2.5 - T[551-587] 21.0 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 19.44 % | 95.5 | 6.35E-20 |
| LRP1B_HUMAN | 21.106 % | 96.3 | 3.53E-20 |
| LRP4_HUMAN | 21.739 % | 101 | 9.28E-22 |