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TRANSCRIPT CARD

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  1. Region 'REG00001231' > 
  2. Molecular Tool 'pSoxB2>Msxb' > 
  3. Transcript 'Phfumi.CG.MTP2014.S2...' > 
  4. Transcript 'KH2012:KH.C5.350.v1....'

Transcript Model

Transcript Id

KH2012:KH.C5.350.v1.B.ND1-1

Possible name(s)

PRDM1; ZNF649; ZSCAN5B

Gene model

KH2012:KH.C5.350

Location

KhC5 [3,762,124 / 3,766,600]

Sequences

Amino acid sequence

Length: 403

>KH.C5.350.v1.B.ND1-1
KNLQKMLRSHPPPLIHAADLFHLRGSITPSESGDDYFFQKGLTASSPPRDDEDQQQDHRS
GYESPKLESQDHPLNLSCRNKRIKFDSDHKDFAFNDWTTGTHCEKKQASDPAPLFARSAQ
QEEAERAVLLYRAQMMASSDFIRAILKRKWEEEMALKAFQQQVEEKSKSVPFAVKHLMNH
QFNYLPYNMLNYASHLALRGSSSPRVFTNPMHPSSSVTIPSPPNSPSKEFDTKPAAKINL
ISDRYPKVICDSPPSLIKENFDTPPFDSSVSPTISLPEMPLDKKKRKKEKSRVRASSSNA
EMYHCTICTASYPHKFELNRHVKVSHVRPHRCTQCGKGFGHRNYLKCRLCGKYLSTGGNL
NVHVRTIHLGEKKYNCPICSRSFGQQCNMKTHMKRHFSKSDDI

Nucleotide sequence

Length: 1,687

>KH2012:KH.C5.350.v1.B.ND1-1
ATTTTATCAAGCGTCGACCAGATTTCACAACGACTAGAAAAATCTTCAGAAGATGTTGCG
ATCCCATCCTCCACCTCTCATCCATGCTGCAGACCTGTTCCACCTCCGGGGAAGCATAAC
TCCCAGTGAGTCTGGAGACGATTACTTCTTCCAGAAAGGACTGACTGCATCAAGTCCTCC
AAGAGATGATGAAGATCAACAACAAGATCACCGCAGTGGTTACGAATCACCAAAACTGGA
GAGCCAGGACCACCCCCTGAACCTCAGCTGCAGAAACAAACGAATCAAGTTTGACTCGGA
CCATAAAGATTTCGCATTCAATGATTGGACAACAGGGACGCATTGTGAGAAGAAACAAGC
ATCTGACCCAGCTCCTTTATTCGCACGTTCAGCACAGCAGGAAGAGGCAGAAAGAGCAGT
TTTATTGTACCGAGCCCAGATGATGGCGTCCAGCGATTTTATCCGAGCGATTTTGAAACG
CAAATGGGAAGAAGAAATGGCACTAAAAGCTTTCCAACAACAAGTCGAAGAAAAATCAAA
ATCTGTTCCTTTCGCAGTAAAACATCTCATGAATCACCAGTTTAATTATTTGCCGTACAA
CATGCTTAATTACGCCTCACACTTAGCGCTAAGAGGTTCCAGTTCTCCTAGAGTTTTCAC
GAACCCAATGCACCCAAGCTCCTCCGTAACTATTCCCTCTCCGCCTAACTCCCCCAGCAA
AGAGTTTGACACAAAACCAGCGGCTAAAATCAACCTTATAAGCGACCGTTACCCGAAAGT
TATTTGCGATTCTCCTCCAAGTTTGATAAAAGAAAACTTCGACACCCCGCCTTTCGACAG
CTCTGTCTCTCCAACGATTTCTCTGCCAGAGATGCCTTTGGATAAGAAGAAGCGCAAGAA
AGAGAAAAGCCGAGTTCGAGCTAGTAGCAGCAATGCCGAGATGTACCACTGCACCATATG
TACTGCCTCCTATCCGCATAAGTTTGAGCTAAACCGGCATGTTAAAGTGAGCCACGTTCG
CCCTCACCGTTGCACCCAATGCGGCAAGGGCTTTGGTCATCGCAACTACTTAAAGTGCCG
ACTCTGTGGCAAATACCTCTCAACCGGCGGCAACCTTAACGTCCACGTTCGTACAATACA
CCTTGGCGAGAAGAAATACAACTGCCCGATCTGCAGTAGAAGTTTCGGCCAACAGTGTAA
CATGAAAACCCATATGAAACGTCACTTTTCAAAAAGCGATGACATCTAGGCCCTACCCTT
CTCATGTGTGCATTCGAAAATGGCCTCTATATGGTGGTTTGAAAATGTTATGCTACAATC
TTTGAGATTTCTTTTGTAAGCAAGCGTATTCCGGCCTCGCGGATCAAAAATTGGAGGTTA
TCAAAATAACTCAAACTGAAAAACTTTACGCCATAGGCATGAAACACCTAAATATACCAT
GTTTAATCGCTATATGCGTTCATTGCCACGGTTCCGGTCGTTTTGTGGAATGCCTAAATA
TAACATGTTTGATGTTATATGCGTATATTACCACGATTGCAGTTTTAGCGCACATAACGC
ATGAGTTCCTAACGGAAGCTGTGATTTCATTAAAAGTTCCAAGTATGTCGTCTATAACGC
GTGTTTTTGTAAATTATCTTTTCTTATTATTTATATATTACACGAAATAAACTAAAAAGA
ATTGTGA

InterProScan

SUPERFAMILY
Znf_C2H2_sf (IPR036236) - T[299-340] 6.86E-7 - T[345-396] 1.91E-11
SMART
Znf_C2H2_type (IPR013087) - T[303-326] 0.0057 - T[345-368] 0.063 - T[374-396] 7.1E-4
ProSiteProfiles
Znf_C2H2_type (IPR013087) - T[303-331] 9.037 - T[345-373] 12.341 - T[374-401] 11.115
ProSitePatterns
Znf_C2H2_type (IPR013087) - T[305-326] . - T[347-368] . - T[376-396] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value