- Transcript 'KH2012:KH.C5.350.v2....'
Transcript Model
Transcript Id
KH2012:KH.C5.350.v2.A.ND1-1
Possible name(s)
PRDM1; ZNF649; ZSCAN5B
Gene model
Location
KhC5 [3,762,124 / 3,766,600]
Amino acid sequence
Length: 417
>KH.C5.350.v2.A.ND1-1
KNLQKMLRSHPPPLIHAADLFHLRGSITPSESGDDYFFQKGLTASSPPRDDEDQQQDHRS
GYESPKLESQDHPLNLSCRNKRIKFDSDHKDFAFNDWTTGTHCEKKQASDPAPLFARSAQ
QEEAERAVLLYRAQMMASSDFIRAILKRKWEEEMALKAFQQQVEEKSKSVPFAVKHLMNH
QFNYLPYNMLNYASHLALRGSSSPRVFTNPMHPSSSVTIPSPPNSPSKEFDTKPAAKINL
ISDRYPKVICDSPPSLIKENFDTPPFDSSVSPTISLPEMPLDKKKRKKEKSRVRASSSNA
EMYHCTICTASYPHKFELNRHVKVSHVRPHRCTQCGKGFGHRNYLKVHIETVHMGRKTHQ
CRLCGKYLSTGGNLNVHVRTIHLGEKKYNCPICSRSFGQQCNMKTHMKRHFSKSDDI
Nucleotide sequence
Length: 1,729
>KH2012:KH.C5.350.v2.A.ND1-1
ATTTTATCAAGCGTCGACCAGATTTCACAACGACTAGAAAAATCTTCAGAAGATGTTGCG
ATCCCATCCTCCACCTCTCATCCATGCTGCAGACCTGTTCCACCTCCGGGGAAGCATAAC
TCCCAGTGAGTCTGGAGACGATTACTTCTTCCAGAAAGGACTGACTGCATCAAGTCCTCC
AAGAGATGATGAAGATCAACAACAAGATCACCGCAGTGGTTACGAATCACCAAAACTGGA
GAGCCAGGACCACCCCCTGAACCTCAGCTGCAGAAACAAACGAATCAAGTTTGACTCGGA
CCATAAAGATTTCGCATTCAATGATTGGACAACAGGGACGCATTGTGAGAAGAAACAAGC
ATCTGACCCAGCTCCTTTATTCGCACGTTCAGCACAGCAGGAAGAGGCAGAAAGAGCAGT
TTTATTGTACCGAGCCCAGATGATGGCGTCCAGCGATTTTATCCGAGCGATTTTGAAACG
CAAATGGGAAGAAGAAATGGCACTAAAAGCTTTCCAACAACAAGTCGAAGAAAAATCAAA
ATCTGTTCCTTTCGCAGTAAAACATCTCATGAATCACCAGTTTAATTATTTGCCGTACAA
CATGCTTAATTACGCCTCACACTTAGCGCTAAGAGGTTCCAGTTCTCCTAGAGTTTTCAC
GAACCCAATGCACCCAAGCTCCTCCGTAACTATTCCCTCTCCGCCTAACTCCCCCAGCAA
AGAGTTTGACACAAAACCAGCGGCTAAAATCAACCTTATAAGCGACCGTTACCCGAAAGT
TATTTGCGATTCTCCTCCAAGTTTGATAAAAGAAAACTTCGACACCCCGCCTTTCGACAG
CTCTGTCTCTCCAACGATTTCTCTGCCAGAGATGCCTTTGGATAAGAAGAAGCGCAAGAA
AGAGAAAAGCCGAGTTCGAGCTAGTAGCAGCAATGCCGAGATGTACCACTGCACCATATG
TACTGCCTCCTATCCGCATAAGTTTGAGCTAAACCGGCATGTTAAAGTGAGCCACGTTCG
CCCTCACCGTTGCACCCAATGCGGCAAGGGCTTTGGTCATCGCAACTACTTAAAGGTCCA
CATTGAAACCGTGCATATGGGACGAAAAACACATCAGTGCCGACTCTGTGGCAAATACCT
CTCAACCGGCGGCAACCTTAACGTCCACGTTCGTACAATACACCTTGGCGAGAAGAAATA
CAACTGCCCGATCTGCAGTAGAAGTTTCGGCCAACAGTGTAACATGAAAACCCATATGAA
ACGTCACTTTTCAAAAAGCGATGACATCTAGGCCCTACCCTTCTCATGTGTGCATTCGAA
AATGGCCTCTATATGGTGGTTTGAAAATGTTATGCTACAATCTTTGAGATTTCTTTTGTA
AGCAAGCGTATTCCGGCCTCGCGGATCAAAAATTGGAGGTTATCAAAATAACTCAAACTG
AAAAACTTTACGCCATAGGCATGAAACACCTAAATATACCATGTTTAATCGCTATATGCG
TTCATTGCCACGGTTCCGGTCGTTTTGTGGAATGCCTAAATATAACATGTTTGATGTTAT
ATGCGTATATTACCACGATTGCAGTTTTAGCGCACATAACGCATGAGTTCCTAACGGAAG
CTGTGATTTCATTAAAAGTTCCAAGTATGTCGTCTATAACGCGTGTTTTTGTAAATTATC
TTTTCTTATTATTTATATATTACACGAAATAAACTAAAAAGAATTGTGA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[299-340] 1.69E-6 - T[326-366] 3.44E-9 - T[357-410] 4.48E-12 |
| SMART |
Znf_C2H2_type (IPR013087) - T[303-326] 0.0057 - T[330-353] 0.0051 - T[359-382] 0.027 - T[388-410] 7.1E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[303-331] 9.037 - T[330-358] 13.131 - T[359-387] 12.424 - T[388-415] 11.115 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[332-353] . - T[361-382] . - T[390-410] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZN649_HUMAN | 39.823 % | 89.7 | 2.2E-19 |
| ZN358_HUMAN | 34.615 % | 87.8 | 1.04E-18 |
| ZN317_HUMAN | 39.45 % | 81.3 | 1.66E-16 |