Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C5.396.v1.A.ND1-1

Possible name(s)

LRGUK; LRRC23; PPP1R7

Gene model

KH2012:KH.C5.396

Location

KhC5 [1,294,130 / 1,298,135]

Sequences

Amino acid sequence

Length: 326

>KH.C5.396.v1.A.ND1-1
EMSEGSDFEDDVGEEEEEDAGVITEAGKLPENPLVQEMVPECLNLLCKIGNGLAHAYVRL
DAHERDLTDIELLRKFIHVRYVDVSGNLLEDISPLNNLTHLLTLKADKNNLKTAKLDPLP
YLQIMNLSGNKITSTEGVEHPLLEQLNLNSNLIPLVSGLNPKFLTNLTTLELRGNKLTTT
AGIYLPNLKNLYLAGNSLKQVEDLDKLENLMILHLRDNQIDKLDGFTENMKKLQYINLRA
NNVSDLKELKKMVALPMLRALVLNDNPCLEEDGYRMEVLIVLRKLERLDKDEYTEDERVE
AEDLYEQRRQEELMKSEEQEEIADEG

Nucleotide sequence

Length: 1,419

>KH2012:KH.C5.396.v1.A.ND1-1
CAAAGTTGTGAACGTACAATTTGTTAAGACCACAGGACAATAATTTGAACCGTGATTAGC
AGTAACTTTAGAAAATTGAATACATAATTTTACGACATTCTAACTGCGTTAAAAAGAATA
AAAATACCTGATGTAAATTTGTTTTTATAACATAGTTAGTCGCAGAAGCCCTTTTGTAAG
AAATGTCTGAAGGATCTGATTTTGAAGACGATGTTGGAGAGGAAGAAGAAGAAGACGCAG
GCGTTATCACTGAAGCGGGAAAATTGCCTGAAAACCCTCTAGTACAAGAAATGGTCCCAG
AATGCTTAAATCTGCTTTGTAAGATTGGTAATGGGCTCGCTCATGCTTATGTTAGACTGG
ATGCCCATGAAAGAGACTTAACAGACATTGAGTTACTGCGGAAGTTTATCCACGTACGTT
ATGTGGATGTCTCAGGAAACCTGCTTGAAGATATTTCACCTTTGAACAATCTCACACATT
TACTAACATTAAAAGCCGACAAAAACAACCTGAAAACTGCAAAACTGGATCCGTTGCCTT
ACTTACAGATAATGAATTTGTCCGGTAATAAGATAACAAGCACTGAAGGAGTTGAACATC
CTTTGCTTGAACAACTCAATTTAAATAGCAACTTGATACCTTTAGTAAGTGGCTTAAATC
CCAAGTTTCTTACCAACCTCACAACCTTAGAACTGCGAGGAAATAAACTGACAACAACTG
CTGGAATATATTTACCAAATCTTAAAAATCTCTACTTGGCAGGAAATTCACTGAAACAAG
TGGAAGATTTGGATAAACTTGAAAACCTAATGATTCTTCATTTAAGAGATAATCAAATTG
ACAAGTTGGATGGTTTTACTGAAAACATGAAGAAGTTACAATATATTAATTTAAGGGCAA
ATAATGTCTCAGATTTAAAAGAACTTAAAAAGATGGTAGCTCTTCCAATGCTGAGAGCAC
TGGTTTTAAATGATAACCCCTGCTTGGAAGAAGATGGTTACCGCATGGAAGTCCTCATCG
TTCTTCGTAAATTAGAGAGACTGGATAAAGATGAATACACGGAAGATGAACGAGTAGAGG
CAGAGGACCTCTATGAGCAGAGGAGGCAAGAGGAACTGATGAAATCAGAAGAGCAAGAAG
AAATTGCTGATGAAGGATGAAAATCTTCCTTGTATGATGTTTTGTTGATTCTTCACCTCA
ACATAGAGGTCTTTCATATATTTTTATGTTTATGAAAAGGTTTTACATTTTGCTAAAAAT
ACAATGCTTGCTTGTGTCGACAGCTGTTAATTTGGTTCGCTGTAGCTTCAGTGCGCCAGT
ATTCACCACTGTTTTGGATATTCGAGTTTCATTAGTGTTTTTCTTTTGAACGTGTCGCAA
TTCAGTCATCCGAAACGCAGCGAGCGAGGAACACGAAGT

InterProScan

Gene3D	LRR_dom_sf (IPR032675) - T[47-183] 6.6E-19 - T[184-306] 2.1E-25
ProSiteProfiles	Leu-rich_rpt (IPR001611) - T[78-99] 7.119 - T[121-142] 6.726 - T[143-163] 5.81 - T[166-186] 5.856 - T[187-208] 8.528 - T[209-230] 7.119 - T[232-253] 6.903

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PP1R7_HUMAN	31.356 %	79	1.74E-16
LRGUK_HUMAN	33.091 %	119	1.45E-29
LRC23_HUMAN	60 %	310	6.67E-105