- Transcript 'KH2012:KH.C1.933.v1....' >
- Transcript 'KH2012:KH.C5.455.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.455.v1.A.nonSL3-1
Possible name(s)
MTREX; SKIV2L
Gene model
Location
KhC5 [3,231,893 / 3,241,279]
Amino acid sequence
Length: 1,042
>KH.C5.455.v1.A.nonSL3-1
RYGIEMAGFGDEIFNVFDEESDEKSKSPRKSTAKRPKISDDSEKLPEKKQKCEEEEDETK
IRDETEKLSELPPPPKDEVEDFSSLLEALPKVETKSMESLITGCTHEVAFQSGSDVPRLL
PKAAEPAKEYKFILDPFQQEALLCLDNNQSVLVSAHTSAGKTVVAEYAIAMCLRDKQRVI
YTTPIKALSNQKYRDLYEEFSDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV
AWVVFDEIHYMRNKERGVVWEETIILLPDNVRYVFLSATIPNARQFASWICHLHKQPCHV
VYTDYRPVPLQHYIFPAGGDGLHLVVDDNGDFREDNFNTAMAVLRDAGDNAKSDFNRRGK
QGGQRGKSGCIQIVELIMERKFLPAIVFSFSKKECEFYANQVQKLKFNSTEERKLVQEVF
DNAMDSLSEEDRRLPQVEACLPFVLNGIGIHHGGLLPIIKETIEILFSEGLIKVLFATET
FSMGVNMPAHTVVFTSIRKFDGKDFRWITGGEYIQMSGRAGRRGMDENGLVIMMVDEKLS
PSVGKALVKGSPDPLDSAFRLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYTAIPEMLEN
VSKLETEYSEMKIKNEEESMTYYRIRQQLNKLASQLEEFVHLPKFCLPFLQPGRLVKVRN
GEHEFGWGVVVNFQKKQPKSSGPMRGGDEPQPEYVVDVLLNCDKEGLHSVAVRLPRPAKD
SLKSEMAVVPIMLPLIKALSSVRLFLPKDLRPLDNRQSLLRALEEVKKRFPDGIPLLDPV
EDMSIKDDRLKSIVKKTEAFERRMYKHPLHTRSDVTQVYQLCENKTKLANKVKEAKRALK
KARTILQMDELKCRKRVLRRLGYATMSDVIETKGRVACEISAADELLLTELIFNGVFNNL
TPAQCAALLCCFVFDEKSKSIPKLSEELATPLRQLHETARKIAKVSNESKLVLDEEEYVQ
KFKTMLMDVVHSWCNGSSFAKIAEMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTHLE
NKFSEGIQLIKRDIIFAASLYL
Nucleotide sequence
Length: 3,451
>KH2012:KH.C5.455.v1.A.nonSL3-1
GAATAGAAGCATTGGATTCCTGAACATATGTTAGTTATTAACGTTACGGTATAGAAATGG
CAGGATTTGGTGATGAAATATTCAACGTATTTGACGAAGAAAGTGACGAGAAGTCAAAAT
CACCAAGAAAATCAACTGCAAAGAGGCCCAAAATATCTGATGACTCTGAAAAACTTCCCG
AAAAGAAGCAAAAATGTGAAGAGGAAGAAGATGAGACTAAAATCCGCGATGAAACAGAGA
AATTGAGTGAACTACCGCCTCCACCAAAAGACGAAGTAGAAGACTTTTCCAGCCTTTTGG
AAGCATTGCCAAAAGTTGAAACGAAATCTATGGAGTCGTTAATCACTGGATGCACACATG
AAGTTGCGTTTCAATCTGGATCAGATGTCCCTCGCTTGCTACCAAAAGCTGCAGAGCCAG
CCAAAGAGTATAAGTTTATTCTGGATCCTTTCCAACAAGAGGCTTTATTGTGTCTTGATA
ACAATCAGTCTGTTCTTGTATCTGCTCATACCTCTGCTGGGAAAACAGTAGTAGCTGAAT
ATGCCATTGCAATGTGCCTACGTGACAAGCAACGTGTTATATATACAACTCCAATCAAAG
CTCTTAGTAATCAAAAGTACAGAGACCTCTATGAGGAATTTTCAGATGTTGGTTTGATGA
CCGGGGATGTTACCATTAATCCAACAGCATCTTGCCTTGTTATGACCACGGAGATTTTGC
GGAGTATGTTATACCGTGGATCAGAAGTTATGCGGGAGGTTGCGTGGGTGGTATTTGACG
AGATCCATTATATGAGGAACAAGGAAAGAGGAGTAGTTTGGGAGGAGACTATCATCCTCC
TCCCAGATAATGTTCGTTATGTTTTCCTCTCTGCCACGATTCCGAACGCTCGGCAGTTCG
CATCATGGATTTGTCACCTTCATAAACAGCCGTGCCATGTGGTGTATACTGACTACCGAC
CGGTGCCACTTCAACATTACATCTTCCCTGCTGGGGGGGACGGACTTCATCTGGTTGTGG
ATGATAATGGTGACTTTCGAGAGGATAATTTCAACACAGCAATGGCGGTGTTACGTGACG
CAGGAGATAATGCTAAAAGTGATTTTAACAGACGAGGAAAGCAGGGTGGACAACGTGGCA
AGAGCGGTTGTATTCAAATAGTTGAACTTATCATGGAAAGAAAATTTCTTCCAGCAATTG
TTTTTTCATTCAGTAAAAAGGAATGTGAATTCTATGCAAACCAAGTACAAAAACTCAAGT
TCAATTCAACTGAGGAGCGAAAATTAGTTCAAGAAGTTTTCGACAACGCAATGGACTCAC
TTTCGGAGGAAGATCGCCGGCTCCCTCAAGTGGAGGCTTGTTTACCGTTCGTGTTGAACG
GAATCGGAATCCATCATGGTGGACTTCTTCCTATTATTAAGGAAACAATTGAGATTCTGT
TTTCAGAAGGATTAATAAAGGTTCTATTTGCCACTGAAACATTTTCAATGGGTGTTAACA
TGCCAGCTCACACTGTTGTTTTTACAAGTATACGGAAGTTTGATGGCAAAGACTTCAGAT
GGATTACTGGTGGGGAGTATATACAGATGAGTGGAAGAGCGGGGAGGAGAGGAATGGATG
AGAACGGCCTCGTAATCATGATGGTTGATGAAAAATTATCCCCCAGTGTTGGGAAGGCAT
TAGTAAAGGGTTCCCCTGACCCACTTGATTCAGCCTTCCGTCTAACATATAATATGGTTC
TTAACTTGCTCCGTGTGGAAGAAATCAACCCAGAATATATGCTGGAAAAATCTTTCTATC
AATTCCAACACTACACTGCAATACCTGAGATGTTGGAAAATGTGTCCAAGTTAGAAACAG
AATATTCTGAAATGAAGATCAAAAATGAAGAAGAGTCGATGACATATTACCGCATTCGGC
AGCAACTAAACAAACTCGCATCACAACTGGAGGAGTTTGTTCATCTTCCCAAATTTTGTC
TCCCGTTTCTGCAACCGGGTAGGCTTGTAAAAGTTCGTAATGGTGAGCATGAATTTGGAT
GGGGTGTGGTCGTCAACTTTCAAAAAAAGCAACCAAAGTCGAGCGGTCCCATGCGTGGTG
GTGATGAACCACAACCTGAATATGTTGTGGATGTGTTACTTAACTGTGACAAGGAAGGGT
TACATTCAGTCGCTGTGAGGTTGCCACGGCCAGCAAAGGACTCCTTGAAAAGTGAAATGG
CCGTAGTCCCAATAATGCTGCCGTTAATAAAAGCCCTTAGTTCTGTGAGACTGTTTCTTC
CTAAAGACCTCAGACCGTTGGATAATAGACAATCACTGCTTCGTGCATTGGAGGAAGTAA
AAAAGAGATTCCCGGATGGGATTCCTCTGCTCGATCCAGTTGAGGACATGTCAATCAAAG
ATGATCGATTGAAATCAATTGTAAAGAAGACGGAAGCTTTTGAGAGAAGAATGTATAAAC
ATCCTCTTCATACAAGATCAGATGTCACTCAAGTTTATCAGCTTTGCGAGAATAAAACAA
AATTGGCGAATAAAGTAAAAGAAGCAAAACGAGCGTTGAAAAAAGCGCGCACCATATTAC
AAATGGATGAATTAAAATGTCGGAAACGTGTTTTACGACGACTTGGTTACGCTACTATGT
CCGATGTTATTGAAACAAAAGGTCGAGTTGCTTGCGAGATAAGTGCAGCCGATGAATTGT
TGTTAACAGAGTTAATTTTCAACGGAGTATTCAACAATCTTACCCCTGCCCAGTGCGCTG
CTTTGCTCTGTTGTTTTGTATTTGATGAAAAGTCGAAAAGCATTCCAAAACTCAGTGAAG
AACTCGCCACTCCGTTACGACAACTACATGAAACTGCACGAAAAATTGCAAAGGTTTCTA
ATGAATCAAAACTTGTTCTTGATGAAGAAGAATATGTTCAAAAGTTTAAAACAATGTTAA
TGGATGTTGTCCATTCATGGTGCAATGGATCATCATTCGCAAAGATCGCAGAAATGACCG
ACGTTTTTGAAGGAAGCATCATAAGATGCATGAGAAGGTTGGAGGAATTGCTCCGAGAGA
TGTGTCACGCTGCCAAAGCCATCGGTAACACTCATCTTGAGAACAAATTTTCCGAAGGAA
TTCAACTTATTAAGCGTGACATCATTTTCGCAGCCAGCTTGTATTTATAAACAATTTCTA
AATAAAGATCCCTCCTTGTTTACGACAGCCATTTCATTTGAGAGGTTTGAGTCCAAGTTT
CGCTCTGAGCTCGTTCGCCTCCTGGATTTCTATATCAACTTCACTCTTTGCCTTCTTACT
ATGTTTACTACTTTTCTTCTTTGACCTGCTCAACGTTTTACAATACAATTAGTGAAGTAG
TAACTATGTGTAATAATAAACTAATGTCAGCTAAACATAGTTTTTAGGCCTCTAGCAAAA
CAAATTTTCGTAAATAAAAATACCGACCGTG
| PIRSF |
Ski2-like (IPR016438) - T[9-1042] 0.0 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[130-313] 3.3E-31 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[136-281] 1.7E-16 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[142-298] 22.675 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[145-283] 1.53E-46 - T[348-404] 1.53E-46 - T[444-538] 1.53E-46 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[372-573] 12.267 |
| CDD |
Helicase_C (IPR001650) - T[372-534] 4.07166E-15 |
| SMART |
Helicase_C (IPR001650) - T[435-524] 1.4E-15 |
| Pfam |
Helicase_C (IPR001650) - T[448-524] 9.9E-7 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[578-841] 1.1E-83 |
| SMART |
Ski2_C (IPR012961) - T[865-1042] 4.9E-95 |
| Pfam |
Ski2_C (IPR012961) - T[868-1037] 1.7E-58 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MTREX_HUMAN | 66.348 % | 1445 | 0 |
| SKIV2_HUMAN | 36.41 % | 578 | 0 |