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TRANSCRIPT CARD

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  1. Molecular Tool 'FoxA-a-MO (Imai's 25mer MO)'
  2. Transcript 'Cisavi.CG.ENS81.R54....'
  3. Transcript 'KH2012:KH.C5.5.v1.A....'

Transcript Model

Transcript Id

KH2012:KH.C5.5.v1.A.nonSL1-1

Possible name(s)

FGF17; FGF18; FGF8

Gene model

KH2012:KH.C5.5

Location

KhC5 [2,812,423 / 2,819,160]

Sequences

Amino acid sequence

Length: 408

>KH.C5.5.v1.A.nonSL1-1
NAASKRLQGGLIIYKGFDIFKAKIPPNYIRDYIKSEIFQENVSQSSSTRRYCEIYSKRTS
NHIRILGKKVDGRGRRGSNHAKLIIHSKGLWGRIMIQGVQTERFLCMNKRGRLVGKNYRK
AINDPKCLFFEEMLENYFDAFSNSKFRDWHIGFHSNGRPKRGPHTKEIGTDEMFIKKCTA
SSGMVPNPTAASNEKYKWIIGEFERDVKRHNKKKKRAPLSVLRPNYSVTRDSSTADEVML
ADSSRTLSTLPPYVQAEIERRRSLYPVLRQQRRLDVTIPPAGGTVSAMDPLYSSPKHRKL
PRRNKPRRSRQNKKRKHRRHKSKWRSTVPTDIVDSDFQPTTGTFTTPFPINSVSEPEAGF
IRTPTTAPGLHRQRSRSGRRRPKQRRRTKKVHGRKQKTGRRNRKRANT

Nucleotide sequence

Length: 1,721

>KH2012:KH.C5.5.v1.A.nonSL1-1
AAATGCTGCTTCAAAACGCCTACAAGGCGGTCTGATCATCTACAAAGGTTTTGACATTTT
TAAAGCAAAGATTCCGCCAAATTACATCAGAGATTACATTAAAAGCGAAATATTTCAAGA
GAACGTAAGCCAATCTTCTTCCACGAGAAGATACTGTGAGATTTACTCGAAACGAACCTC
GAACCACATTCGAATACTCGGCAAGAAAGTGGACGGGAGAGGAAGAAGAGGCAGCAATCA
TGCAAAACTAATAATCCACTCTAAAGGCTTATGGGGTCGGATAATGATTCAAGGCGTCCA
AACTGAACGGTTTCTTTGCATGAATAAAAGAGGACGACTAGTTGGAAAGAATTATCGAAA
AGCGATCAACGACCCGAAGTGCCTATTCTTCGAAGAGATGTTGGAAAATTATTTTGATGC
TTTTTCGAACTCTAAGTTTCGCGATTGGCATATTGGTTTCCATTCAAACGGCAGACCAAA
GCGAGGTCCACACACCAAAGAAATCGGCACTGATGAAATGTTCATAAAGAAGTGTACAGC
ATCCAGCGGTATGGTACCGAACCCGACCGCTGCCAGTAACGAGAAGTACAAATGGATTAT
TGGCGAGTTCGAAAGGGACGTGAAGCGACATAACAAGAAGAAAAAGAGAGCCCCTTTATC
TGTTTTAAGACCAAATTATTCTGTCACTAGAGATTCATCAACCGCCGACGAAGTTATGCT
TGCCGACTCTTCCAGAACTTTGTCGACCCTACCTCCGTATGTTCAAGCTGAAATCGAACG
ACGACGGAGTCTGTACCCTGTTTTGCGACAGCAGCGTAGACTTGACGTTACCATACCGCC
AGCAGGTGGGACAGTGTCCGCCATGGATCCGCTGTACTCGAGCCCAAAGCATCGAAAGTT
ACCTCGCCGCAATAAACCTAGACGGAGCAGACAAAATAAGAAACGAAAACACAGAAGACA
TAAATCGAAATGGAGGTCTACTGTCCCTACTGATATAGTGGATTCAGACTTTCAACCTAC
GACTGGGACCTTTACAACACCGTTCCCAATAAACTCTGTAAGCGAACCCGAAGCCGGGTT
TATTAGAACCCCGACTACAGCACCGGGCCTGCATAGACAACGATCGCGGAGCGGGAGGCG
GCGACCGAAACAGAGAAGACGGACGAAAAAAGTCCATGGTCGGAAACAGAAAACCGGTCG
GCGGAACCGAAAACGAGCAAACACATGAGCTGGTCAAAAAAGACGGAACGCGTCGAGTCT
GCTTGATTCGAGGTGTAAATCCGAAAAAATAGGAGTTTTTTCCGGAGGCGAGGACAACTC
GTTGAGATTGGAGAAGTGCTGACGGAAAGCGCCGATGATCGTCGGAATTTCGGATCCGGG
ATCTCATTTATCACCGTCCTTTTATACCGAGTGCAATATTTCATCTTTATGTAGTGTTTT
TTTCTCGCGGTGCCATTCGTTAAAAACTCGCAAGGCCCAGCCACGTCAATATAACATTCC
CCAAACGTCTTTGTATTTTTGTTATTTCTGTGGATGCCTTGGTTCCAGTCGGAACTGGTT
TAATCCGGTTCCTTACTCTTTCTCAACCGGTTTCTGAACACATTCCTCTTACATGACTTC
TGCGTCTTTCTATATAGGGCGTGCGTTCGATTGCCTATATATTGCTTTTGATATGATTTT
TACTATTTATTACTCAAAAACAATAAAAACATTATTCAGTG

InterProScan

PANTHER
Fibroblast_GF_fam (IPR002209) - T[35-334] 2.5E-78
SUPERFAMILY
IL1/FGF (IPR008996) - T[41-176] 2.75E-33
SMART
Fibroblast_GF_fam (IPR002209) - T[48-178] 1.8E-19
Pfam
Fibroblast_GF_fam (IPR002209) - T[50-175] 4.3E-34

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
FGF18_HUMAN 35.938 % 109 5.06E-28
FGF17_HUMAN 30.921 % 99.8 2.58E-24
FGF8_HUMAN 30.769 % 87.8 5.65E-20