- Transcript 'KH2012:KH.C3.139.v2....' >
- Clone 'csef026j04' >
- Molecular Tool 'Msx>Ngn (Stolfi 2011)' >
- Region 'REG00000077' >
- Transcript 'KH2012:KH.C5.544.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.544.v1.A.nonSL3-1
Possible name(s)
DHH; IHH; SHH
Gene model
Location
KhC5 [3,616,101 / 3,623,569]
Amino acid sequence
Length: 328
>KH.C5.544.v1.A.nonSL3-1
RISGTVMPHSKRYVLLLTNFLCVYMVISCGSGPRYGTRPNQRNLRPLLRQQYVPHVSEGT
IGASGPSEGRIYRNTPRYRKLERNYNTDIEFEDRERDGSDRTMTKRCKDKVNLLSMLVKN
TWAGVSLKVIEAWDGDGVHRKGSLHYEGRAVDIKTSDNDLSKNGLLARLAVESGFDWVYY
ESKFYVHASVRADNSDAAKYGGCFDGVSEVRNESGSVIPMNKVNVGDRILAVDRTTGKPV
FSEVIMFLDKQPEIGGSYIEIRSQLETIRLTANHMLFIATQTNCSNSFSATKRAVFAGDI
FSGQYVYTTIQARVVLKFNLHAWNRLLR
Nucleotide sequence
Length: 1,750
>KH2012:KH.C5.544.v1.A.nonSL3-1
ATCACAGCACTTGGAGTCAACGGAAGCAGCGCAAATGTTCCGAGTAGGCTTTGGCCAGGA
GGCGAGTAACGTATAAGCGGGACAGTCATGCCACACAGCAAGCGGTACGTTCTGTTACTG
ACCAATTTTCTATGCGTTTACATGGTCATATCATGCGGGTCAGGGCCAAGATACGGTACG
CGACCCAACCAGCGAAATTTGCGCCCCTTGCTGAGGCAGCAGTATGTGCCACATGTGTCC
GAAGGCACAATCGGGGCCAGTGGGCCAAGCGAAGGAAGAATTTATAGAAATACACCCAGA
TATCGGAAGTTGGAGAGAAATTACAACACGGACATAGAATTTGAAGACCGAGAACGGGAT
GGAAGCGACAGAACGATGACAAAGAGATGCAAAGACAAAGTCAATCTCTTGTCAATGTTG
GTGAAGAACACATGGGCCGGTGTGAGCCTTAAAGTTATCGAAGCTTGGGATGGGGACGGG
GTACACCGGAAAGGATCCCTTCACTATGAAGGGAGAGCCGTAGACATCAAAACCAGTGAC
AATGACTTGTCGAAAAACGGTTTATTGGCGAGGCTTGCCGTGGAGTCGGGATTCGACTGG
GTCTATTATGAGTCCAAGTTTTACGTCCACGCAAGCGTGCGTGCCGATAACTCAGATGCA
GCGAAGTACGGAGGATGCTTCGACGGCGTAAGCGAAGTTAGAAACGAAAGCGGGTCCGTC
ATCCCAATGAACAAAGTAAACGTAGGGGATCGGATATTAGCTGTGGACCGTACTACAGGA
AAACCCGTATTTTCCGAAGTCATTATGTTTCTGGACAAACAGCCTGAAATCGGAGGCTCA
TACATCGAAATTCGATCTCAGCTTGAAACTATACGACTCACAGCAAATCATATGCTGTTC
ATAGCGACGCAGACGAACTGCTCAAACTCATTTTCCGCGACCAAAAGAGCGGTTTTCGCC
GGAGACATTTTTTCAGGCCAATACGTTTATACAACCATCCAAGCCCGGGTGGTTTTGAAA
TTCAACCTTCACGCGTGGAATCGGTTACTACGGTAACTGGGGACGGTCTATATGCCCCGC
TTACCGCACACGGCACTGTAGTCGTGGACGGTATAGTTGCGTCTTGCTATGGAGTTATAG
GGTCAGAGACGTTAGCGCATGCCGCTATGCTTCCAATACGTTCTTTTCCTTATTTAAGGC
GAACCAACAGCGACGTTGGAATTCATTGGTACGCGAAATCACTGGCTGAAATAGCTCGTA
TTGTTTTACCGCACCATTGGTTTAAGTTACACTGAAGTTTTTACATTGGTTCCACATTGC
CGCTTACATTCTTATGTGTTACTGCTGTTACAGAGAAAACGGGACTCCAAAGTTTTTTTT
TGCTGTAAGCAGTCTACCGCTGCGCTGCAACTTTCGACGTTTCAAGAAAAGCAGAACAAA
ACAGTTATCGAATCTTACTTGCATATATATGAAGCTACATATTAATGAGGATATGTCAGA
GCTGATGTCCTATCTACTTTTAACTATATACTGTTCTGTTTCGACAAATGTATTACTATA
TACCGCTTGTTATTTACTCTTCGACATTTAGCACCGAGCCTGTACTGGTGTAAATCGTAA
ATATTTTTTAATGTGCTGAAACGATGCTACACCGACCTTACTCTCTCTACACTGTGTGTG
CCGGGTGGTACAGTTTTGTGGGTTTGTCCTAACGTGTTGAACTGGTGCCTTAATAGTAAG
AGTATAGCTC
| Pfam |
Hedgehog_signalling_dom (IPR000320) - T[29-189] 3.7E-72 |
| SUPERFAMILY |
Hedgehog_sig/DD-Pept_Zn-bd_sf (IPR009045) - T[43-198] 1.33E-70 |
| Gene3D |
Hedgehog_sig/DD-Pept_Zn-bd_sf (IPR009045) - T[43-204] 5.9E-66 |
| PRINTS |
Hedgehog (IPR001657) - T[102-120] 5.3E-44 - T[122-139] 5.3E-44 - T[142-164] 5.3E-44 - T[166-187] 5.3E-44 - T[188-206] 5.3E-44 - T[270-280] 5.3E-44 |
| Pfam |
Hint_dom (IPR001767) - T[192-309] 1.1E-31 |
| SMART |
Hint_dom_N (IPR003587) - T[201-310] 2.2E-13 |
| SUPERFAMILY |
Hint_dom_sf (IPR036844) - T[203-310] 1.7E-19 |