- Transcript 'KH2012:KH.C5.551.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.551.v1.R.ND1-1
Possible name(s)
EEA1; RBSN; RUFY1
Gene model
Location
KhC5 [1,753,533 / 1,758,746]
Amino acid sequence
Length: 590
>KH.C5.551.v1.R.ND1-1
RFRLFLLVMGTVKEGFLCPICVQDLGSFHGLQKHFESAHTAEDRAVLDQIKGLFSKAKVR
LLKKDEITNHEVALSSNHSMQQHAGPVWESQDIGQTRNHTSNFKKIRDARIDRFVIESNK
VLIRLDKLLCQVMKTKRKNTKEFEQTLVPWVRDVDVPYCPTCGDRFNVARRRHHCRLCGS
IMCTKCSLFVQLELADQLVESLRKVPGMRKRTQSDLNLSRSASMSSSQDEEISLRCCHDC
YVVLMKRKDRLEQDKNMPLLVLLYEKLQSATNGANSLAPEYEKIADSLNQGEETYELDTA
NELRFKLIKLYEKIDVVSKKIEVLNSEDEEFPLSPTTVRLQTSIRRASHAYLQENMLTLR
SLPSFPKLEILQKNRRQEQEKKMRRQREEAERQRIEEERREMELEAQKIRNHQPQVSSMH
KSSSDAVLDKGWRANTVNQNSNQFGNPFETNPLLEQINYVQQMLKQAKSENRFEEIESLN
RNLRELENELKRQEIRGKKVPQKKLQNTNPFLIDTPSTNGNTNPFLMDETAKPFNKSYGN
PFEETEADPVLHQISYIKNCIEKAVKAGKTDEARMLRENLEQLHLMYTNQ
Nucleotide sequence
Length: 2,048
>KH2012:KH.C5.551.v1.R.ND1-1
GTCGATTTCGGTTGTTTCTATTAGTTATGGGTACAGTTAAAGAAGGTTTTCTGTGTCCAA
TTTGTGTTCAAGATTTGGGTTCGTTTCATGGATTACAAAAACATTTCGAAAGCGCACATA
CAGCGGAGGATCGAGCGGTTTTGGATCAAATTAAAGGTCTTTTCAGCAAGGCAAAAGTTA
GATTATTAAAAAAAGATGAAATAACCAACCATGAAGTTGCTTTGTCATCAAATCATTCAA
TGCAACAACATGCTGGTCCAGTGTGGGAGTCACAAGACATAGGCCAAACTCGAAACCACA
CAAGCAACTTTAAAAAGATCAGGGATGCTCGAATTGATAGATTTGTTATCGAATCAAACA
AGGTTTTAATTCGGCTTGATAAGCTTCTTTGCCAAGTTATGAAAACTAAAAGAAAAAACA
CAAAAGAATTTGAACAAACGTTGGTGCCATGGGTGCGTGATGTTGACGTACCATATTGCC
CCACATGTGGTGATCGGTTTAACGTTGCGAGAAGACGCCATCATTGTAGGTTGTGTGGGT
CTATCATGTGCACTAAATGTTCTTTGTTCGTTCAACTAGAGTTGGCAGATCAATTGGTGG
AAAGCTTAAGGAAAGTACCTGGTATGCGTAAAAGAACACAATCAGATTTGAACCTGTCTC
GTAGCGCATCGATGAGCTCATCTCAAGACGAGGAGATCAGTTTACGTTGTTGTCATGATT
GCTATGTTGTGCTAATGAAGAGAAAAGACAGATTGGAACAAGACAAAAATATGCCCTTGT
TAGTTCTTCTTTATGAGAAATTACAAAGTGCAACTAATGGGGCTAACAGCCTGGCACCAG
AATATGAAAAAATTGCTGATTCTCTCAATCAAGGTGAGGAGACTTACGAACTGGACACAG
CAAATGAATTGCGTTTCAAGCTTATTAAGTTGTATGAGAAAATTGATGTTGTGAGTAAGA
AGATAGAGGTGCTGAACTCAGAAGATGAAGAATTTCCTCTTTCACCGACGACAGTTCGAC
TTCAAACTTCAATACGTAGAGCTTCACATGCTTATTTACAAGAGAACATGTTGACTCTTC
GCTCTCTTCCCTCGTTCCCAAAACTTGAGATCCTCCAGAAGAATCGGAGGCAGGAGCAGG
AGAAAAAGATGAGGAGACAGAGAGAAGAAGCTGAACGACAAAGAATAGAAGAAGAAAGAA
GAGAAATGGAATTAGAAGCTCAGAAGATTAGAAATCACCAACCACAAGTTTCTAGTATGC
ATAAAAGCAGCTCCGATGCTGTATTAGATAAAGGGTGGCGTGCTAACACTGTCAATCAAA
ATTCAAATCAATTCGGAAATCCTTTTGAGACGAACCCATTGTTGGAGCAGATCAATTATG
TTCAGCAAATGTTAAAACAAGCAAAATCGGAAAATCGTTTCGAAGAAATAGAAAGTCTAA
ATCGGAACTTACGAGAGCTGGAGAATGAGTTGAAAAGGCAGGAAATTCGGGGTAAAAAGG
TTCCTCAAAAGAAACTGCAAAATACGAATCCTTTTCTTATTGATACCCCTTCAACAAATG
GAAATACAAATCCATTCTTAATGGATGAAACTGCTAAACCATTCAATAAATCTTATGGCA
ATCCTTTTGAAGAGACTGAAGCAGACCCTGTGCTACACCAAATATCTTATATTAAAAACT
GCATTGAAAAAGCCGTGAAAGCGGGAAAGACTGATGAAGCTAGAATGTTAAGAGAAAACT
TGGAGCAATTGCATTTGATGTATACAAATCAATAGTGTTAATAAGAAAATATTAATAATT
GCTGTTAAGGTATTTAAATCTGATGTTGTACTGCTTTCAATCACAGGCATGAAGTTTTTA
TACAATATGTATTACATTGTTCATATATGACTGACCTGTGTTTGGTTTGATTTTCTTCCC
TTTATACTTCAATGAAATTTTTCTCTTTTAAAACTAAAAGAGTCAATAGCAGTGTTCGCA
TGGTGCATTAATTTATTTTTCATGTGCAATTTTGATTCATCTGAACATAATACATAAGTT
TTAATGTT
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[18-39] . |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[136-207] 1.2E-14 |
| SMART |
Znf_FYVE (IPR000306) - T[145-246] 2.9E-12 |
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[149-195] 1.68E-15 - T[228-253] 1.68E-15 |
| Pfam |
Znf_FYVE (IPR000306) - T[149-244] 1.4E-17 |
| ProSiteProfiles |
Znf_FYVE-rel (IPR017455) - T[153-245] 10.768 |
| SUPERFAMILY |
Rbsn_Rab-bd_sf (IPR036531) - T[445-493] 1.57E-13 - T[542-587] 2.22E-8 |
| Pfam |
Rbsn_Rab_binding_dom (IPR021565) - T[452-493] 2.3E-14 - T[551-587] 3.0E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBNS5_HUMAN | 38.462 % | 311 | 2.41E-96 |