- Transcript 'KH2012:KH.C4.358.v1....' >
- Transcript 'KH2012:KH.C1.635.v1....' >
- Transcript 'KH2012:KH.C5.566.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.566.v1.A.SL1-1
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
KhC5 [4,812,120 / 4,823,351]
Amino acid sequence
Length: 1,237
>KH.C5.566.v1.A.SL1-1
WVYKTERREINAMLTKFETKSARVKGLSFHPKRPWVLSSLHNGCIQLWDYRMCTLIDKFE
EHDGPVRGVCFHSQQPLFVSGGDDYKIKIWNYKLRRCLFTLLGHLDYIRTAVFHHEYPWI
LSASDDQTIRIWNWQSRNCIAVLTGHNHYVMSAQFHPTDDLIVSASLDQTARVWDISGLR
KKNLSPGGNSLEETVRGTPGSAGGPSSIELFGSTDFLVKHVLEGHDRGVNWACFHPSLPV
VVTAADDRLVKLWRMNESKAWEVDSCRGHYNNVSCCSFHPRQDLIISASEDKSIRVWDMG
KRSSIQSFRRDQDRFWILSCHPTLNLFAAGHDNGMVIFKLERERPAFATHGNMLYYVKEK
YLRRLDFTTSKDLPIMQLRSGSKTSVFALSYNPAENTVLVTSRASNIENSHYDLYQVPKN
VDSSNPDSPEGKRASGLTAVWVARNRFAVLDRTHTIVIKSLKNDIMKKIQVPGVDEIFHA
GTGALLLRSADGVTLYDVQQKRTLASVKIAKVKYVVWSSDMSHVALLAKHNIAICNRKLE
SLSTVHENVRVKSGAWEESGVFIYTTSNHIKYALTNGDHGIIRTLDLPIYITRVRATNVY
CLDRETRPRVLSIDPTEFKFKMALVNRKYDEVLHMVRNSKLVGQSIIAYLQQKGYPEVAL
HFVKDDKTRFTLAVECGDIEVALAAAKALEDKQCWERLAEVALACGNHQVVEMAYKRTKN
FDKLAFLYLLTGNLENLRMMIKIAEIRKDTSGHYQAALYLGDVAERVKVLRGCGQKSLAY
LTAKTHGLEEEASQLEEEDSPSVPENAVLLQPPPPIQQCKDNWPLLTVSKGFFQESRVGK
GGSGGGLAADVDIDEDTAGWGDDVDIILDEEGAIVDEEFEDADDGAGGEGGGWDVDDDDL
DLPADLDIAADVGGEGEGYFVAPTKGTPQSQVWCNNSQLPVDHITAGSFDTAFRLLQDQV
GVVDFKPYKQLFLHTYARARSAFTAVPGIPPMFGNPHRNWREAGAKSGLPVVGLTLATLA
ARLQDAYKLTTQGKFEDAIVKFREILLSVPLLVVDNKQEINEAQQLITICREYLVGLSME
QERKKLPKSNLKEQMRICEMAAYLTHCQWQPVHLILALRTAQTVFFKLKNYKSAAIFARR
LLELGPKPDVASQTRKIIAACDKNPIDTHELRYDAHNPFDICAASYIPIYRGKPVEKCPL
SGACYDPDFKGEVCRVTTCTEIGKSCMGLRVSAIQFR
Nucleotide sequence
Length: 3,982
>KH2012:KH.C5.566.v1.A.SL1-1
CATCATCAGTTTGGTAACTGCTATAAGTAGTGGGTATATAAAACAGAAAGGCGAGAAATT
AACGCCATGCTGACAAAGTTTGAAACCAAATCAGCTCGCGTGAAAGGTCTCTCATTTCAT
CCAAAGCGACCATGGGTATTATCCTCTTTACACAATGGTTGTATTCAACTATGGGATTAC
AGGATGTGCACATTGATTGATAAATTTGAGGAGCATGATGGTCCAGTAAGAGGAGTTTGC
TTTCACAGCCAACAACCTTTATTTGTATCTGGTGGAGATGATTATAAAATCAAGATCTGG
AATTACAAGTTAAGAAGATGCCTCTTCACTCTTCTGGGCCATCTGGATTACATTAGAACT
GCAGTTTTCCACCACGAGTACCCATGGATCCTCAGTGCTTCAGATGATCAGACCATTCGG
ATTTGGAACTGGCAGTCAAGAAACTGCATTGCTGTTCTTACCGGGCACAACCATTATGTG
ATGTCAGCTCAATTCCATCCAACCGATGACCTCATCGTGTCTGCTTCTCTGGATCAAACT
GCAAGAGTGTGGGACATATCTGGTTTACGTAAGAAGAACTTATCCCCTGGTGGTAATTCG
TTAGAGGAGACAGTAAGGGGAACACCTGGTTCTGCAGGTGGTCCAAGTTCCATCGAGTTG
TTTGGAAGTACTGACTTCTTGGTCAAACATGTTTTGGAGGGTCACGATCGTGGGGTAAAC
TGGGCATGCTTCCACCCCAGCCTACCAGTAGTGGTAACAGCAGCTGATGATCGACTTGTT
AAACTGTGGAGGATGAATGAGTCAAAGGCTTGGGAGGTGGATTCATGCAGAGGTCATTAC
AACAATGTCTCTTGTTGCTCCTTCCATCCAAGACAAGACCTCATTATTAGCGCTTCCGAG
GATAAATCCATCCGCGTGTGGGACATGGGAAAGAGATCAAGTATTCAGTCATTTAGAAGG
GACCAAGACAGATTCTGGATTTTGTCTTGCCACCCAACTTTGAACTTGTTCGCTGCCGGC
CACGATAACGGGATGGTCATATTTAAGTTGGAGAGAGAAAGACCAGCATTCGCCACCCAT
GGCAACATGTTGTATTATGTCAAGGAGAAATATTTACGTCGTCTTGACTTTACAACAAGC
AAGGACCTTCCTATTATGCAACTTAGAAGTGGTTCAAAGACGAGTGTTTTTGCTCTCTCA
TATAATCCTGCTGAGAACACTGTCCTTGTTACATCTCGTGCGTCTAACATTGAGAATTCC
CACTATGACCTTTACCAGGTTCCCAAGAACGTGGATTCTTCTAACCCTGACTCACCTGAG
GGCAAGAGAGCATCAGGCCTTACTGCGGTGTGGGTCGCTCGTAATCGGTTCGCTGTACTT
GACCGAACGCACACGATCGTCATCAAGAGTTTGAAGAACGACATAATGAAGAAGATACAA
GTCCCTGGCGTAGATGAGATCTTCCATGCCGGTACTGGAGCACTTTTGCTACGAAGTGCA
GATGGTGTAACACTCTATGATGTGCAACAGAAGAGAACCCTTGCATCTGTAAAAATAGCC
AAAGTAAAGTACGTTGTTTGGTCGAGTGATATGTCCCATGTCGCCCTGCTTGCAAAACAC
AACATCGCGATTTGTAATCGGAAGTTGGAATCTCTCTCCACGGTCCATGAGAACGTGAGA
GTAAAGTCTGGAGCTTGGGAGGAGAGTGGTGTCTTCATCTACACAACTTCAAACCATATC
AAATACGCTCTTACTAATGGGGATCACGGCATCATACGAACTCTTGATCTTCCCATTTAC
ATCACGAGAGTACGAGCCACGAACGTTTATTGTCTCGATCGCGAAACTCGACCGAGGGTT
CTGTCTATTGACCCAACGGAGTTTAAATTTAAGATGGCGCTAGTAAACAGAAAATACGAC
GAGGTGTTACACATGGTTCGCAACAGTAAACTGGTTGGACAATCCATCATTGCTTATTTG
CAACAGAAGGGTTACCCCGAGGTTGCTTTGCATTTTGTGAAGGATGACAAGACAAGATTC
ACCCTTGCTGTGGAATGCGGGGATATTGAGGTGGCACTGGCTGCTGCGAAAGCTTTGGAA
GACAAACAATGCTGGGAAAGACTCGCTGAAGTTGCTCTCGCATGCGGAAACCACCAAGTG
GTAGAAATGGCGTACAAACGAACGAAGAACTTCGATAAGCTCGCTTTTCTTTACCTACTC
ACTGGAAACCTGGAAAATTTAAGAATGATGATCAAGATTGCCGAGATCCGAAAAGATACA
TCCGGGCACTACCAGGCTGCTCTTTACCTTGGTGATGTTGCCGAGAGAGTAAAAGTCCTC
CGTGGATGCGGGCAGAAGTCTCTCGCTTACCTCACAGCGAAGACACATGGATTAGAAGAG
GAGGCAAGTCAGTTGGAGGAAGAAGACTCTCCTAGTGTCCCTGAGAACGCAGTTCTTCTC
CAACCCCCTCCTCCTATTCAACAATGCAAAGATAACTGGCCCCTACTAACTGTCAGTAAA
GGATTCTTCCAGGAGTCCCGAGTAGGGAAGGGAGGTTCAGGTGGAGGACTTGCTGCGGAT
GTTGATATTGATGAAGACACAGCTGGATGGGGAGATGATGTTGATATCATCCTGGATGAG
GAAGGAGCAATCGTGGATGAGGAGTTTGAGGATGCAGATGATGGAGCAGGAGGAGAGGGA
GGGGGCTGGGATGTTGATGATGATGATCTTGATCTTCCTGCTGATCTTGACATAGCTGCG
GATGTTGGAGGAGAGGGAGAAGGATATTTTGTTGCTCCTACTAAAGGAACACCTCAGTCA
CAAGTCTGGTGCAATAACTCCCAGTTACCTGTGGATCATATAACTGCTGGATCATTCGAC
ACAGCATTTAGGCTTCTTCAAGACCAAGTTGGCGTTGTAGATTTCAAACCTTACAAGCAG
CTATTCTTGCACACGTACGCCCGTGCACGCAGTGCATTCACCGCTGTACCAGGTATACCC
CCTATGTTTGGCAACCCACATCGAAACTGGAGGGAGGCCGGAGCAAAATCGGGGTTACCG
GTTGTTGGGCTTACCCTCGCTACCCTCGCTGCAAGGCTACAGGATGCTTACAAACTAACC
ACGCAAGGTAAATTTGAGGATGCCATCGTTAAATTTCGTGAGATATTACTTTCTGTACCA
CTGCTGGTGGTAGATAACAAACAAGAAATAAATGAGGCACAGCAGCTCATCACTATATGT
CGTGAGTATTTGGTTGGTCTATCTATGGAACAGGAAAGGAAGAAACTTCCAAAATCGAAC
TTGAAAGAACAAATGAGGATCTGTGAGATGGCTGCATACCTTACACACTGTCAGTGGCAA
CCTGTACATTTAATACTCGCACTAAGGACAGCTCAGACTGTTTTCTTCAAGCTCAAGAAT
TATAAGAGTGCTGCGATTTTTGCTCGTCGATTATTAGAGCTTGGTCCGAAGCCCGACGTT
GCATCCCAAACAAGAAAAATTATCGCTGCCTGTGACAAGAACCCAATCGACACCCATGAA
CTAAGATACGACGCGCATAACCCATTCGATATTTGCGCTGCTTCCTATATTCCTATATAT
AGGGGTAAACCCGTTGAGAAATGTCCGCTAAGTGGAGCATGTTACGACCCAGATTTTAAG
GGTGAAGTCTGTAGAGTCACAACTTGCACGGAGATAGGAAAAAGCTGCATGGGCTTGAGA
GTCAGCGCTATACAGTTCCGCTAAATAGCCCTTTGGATATCCCTGTTTTCTTCTTGAGAT
ATATATGTACAGCACGTTATGCCTTGATCATTTTGTCCCTATTTAAACTCTTGTGCAATT
TGGGGCATTCTGCTATAGCAAGCAAGGGGGACTGTAGAAATTCAAGATTCCTAAAGAAAG
GCGTGACTTAAACCATATTATGTGGTGTTTATTGCTTGTATGATTTGCGCATAGTATGAA
TCTTAATAAAATATATAACGAC
| SMART |
WD40_repeat (IPR001680) - T[10-49] 0.7 - T[52-91] 2.8E-7 - T[94-133] 4.8E-7 - T[136-175] 2.3E-10 - T[215-254] 2.4E-5 - T[259-298] 1.2E-8 - T[301-339] 41.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[11-341] 6.8E-128 |
| PIRSF |
Coatomer_asu (IPR016391) - T[11-1233] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[15-180] 1.46E-72 - T[218-337] 1.46E-72 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[17-307] 49.197 |
| Pfam |
WD40_repeat (IPR001680) - T[24-49] 0.22 - T[56-91] 9.1E-6 - T[96-133] 3.8E-7 - T[138-175] 5.0E-6 - T[220-253] 0.0028 - T[263-298] 8.8E-8 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[59-100] 12.647 - T[101-142] 12.38 - T[143-177] 14.753 - T[222-263] 11.712 - T[266-307] 15.287 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[120-134] 6.2E-7 - T[162-176] 6.2E-7 - T[285-299] 6.2E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[162-176] . - T[285-299] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[365-787] 2.6E-136 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[830-1237] 7.7E-177 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 73.808 % | 1948 | 0 |
| COPB2_HUMAN | 26.199 % | 265 | 5.11E-74 |
| LIS1_HUMAN | 25.424 % | 114 | 7.7E-27 |