- Transcript 'KH2012:KH.S115.4.v2....' >
- Transcript 'KH2012:KH.L84.6.v1.A...' >
- Clone 'AHC0AAA55YN04' >
- Transcript 'KH2012:KH.C5.566.v2....'
Transcript Model
Transcript Id
KH2012:KH.C5.566.v2.A.SL2-1
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
KhC5 [4,812,120 / 4,821,476]
Amino acid sequence
Length: 1,056
>KH.C5.566.v2.A.SL2-1
KNLSPGGNSLEETVRGTPGSAGGPSSIELFGSTDFLVKHVLEGHDRGVNWACFHPSLPVV
VTAADDRLVKLWRMNESKAWEVDSCRGHYNNVSCCSFHPRQDLIISASEDKSIRVWDMGK
RSSIQSFRRDQDRFWILSCHPTLNLFAAGHDNGMVIFKLERERPAFATHGNMLYYVKEKY
LRRLDFTTSKDLPIMQLRSGSKTSVFALSYNPAENTVLVTSRASNIENSHYDLYQVPKNV
DSSNPDSPEGKRASGLTAVWVARNRFAVLDRTHTIVIKSLKNDIMKKIQVPGVDEIFHAG
TGALLLRSADGVTLYDVQQKRTLASVKIAKVKYVVWSSDMSHVALLAKHNIAICNRKLES
LSTVHENVRVKSGAWEESGVFIYTTSNHIKYALTNGDHGIIRTLDLPIYITRVRATNVYC
LDRETRPRVLSIDPTEFKFKMALVNRKYDEVLHMVRNSKLVGQSIIAYLQQKGYPEVALH
FVKDDKTRFTLAVECGDIEVALAAAKALEDKQCWERLAEVALACGNHQVVEMAYKRTKNF
DKLAFLYLLTGNLENLRMMIKIAEIRKDTSGHYQAALYLGDVAERVKVLRGCGQKSLAYL
TAKTHGLEEEASQLEEEDSPSVPENAVLLQPPPPIQQCKDNWPLLTVSKGFFQESRVGKG
GSGGGLAADVDIDEDTAGWGDDVDIILDEEGAIVDEEFEDADDGAGGEGGGWDVDDDDLD
LPADLDIAADVGGEGEGYFVAPTKGTPQSQVWCNNSQLPVDHITAGSFDTAFRLLQDQVG
VVDFKPYKQLFLHTYARARSAFTAVPGIPPMFGNPHRNWREAGAKSGLPVVGLTLATLAA
RLQDAYKLTTQGKFEDAIVKFREILLSVPLLVVDNKQEINEAQQLITICREYLVGLSMEQ
ERKKLPKSNLKEQMRICEMAAYLTHCQWQPVHLILALRTAQTVFFKLKNYKSAAIFARRL
LELGPKPDVASQTRKIIAACDKNPIDTHELRYDAHNPFDICAASYIPIYRGKPVEKCPLS
GACYDPDFKGEVCRVTTCTEIGKSCMGLRVSAIQFR
Nucleotide sequence
Length: 3,409
>KH2012:KH.C5.566.v2.A.SL2-1
AAGAACTTATCCCCTGGTGGTAATTCGTTAGAGGAGACAGTAAGGGGAACACCTGGTTCT
GCAGGTGGTCCAAGTTCCATCGAGTTGTTTGGAAGTACTGACTTCTTGGTCAAACATGTT
TTGGAGGGTCACGATCGTGGGGTAAACTGGGCATGCTTCCACCCCAGCCTACCAGTAGTG
GTAACAGCAGCTGATGATCGACTTGTTAAACTGTGGAGGATGAATGAGTCAAAGGCTTGG
GAGGTGGATTCATGCAGAGGTCATTACAACAATGTCTCTTGTTGCTCCTTCCATCCAAGA
CAAGACCTCATTATTAGCGCTTCCGAGGATAAATCCATCCGCGTGTGGGACATGGGAAAG
AGATCAAGTATTCAGTCATTTAGAAGGGACCAAGACAGATTCTGGATTTTGTCTTGCCAC
CCAACTTTGAACTTGTTCGCTGCCGGCCACGATAACGGGATGGTCATATTTAAGTTGGAG
AGAGAAAGACCAGCATTCGCCACCCATGGCAACATGTTGTATTATGTCAAGGAGAAATAT
TTACGTCGTCTTGACTTTACAACAAGCAAGGACCTTCCTATTATGCAACTTAGAAGTGGT
TCAAAGACGAGTGTTTTTGCTCTCTCATATAATCCTGCTGAGAACACTGTCCTTGTTACA
TCTCGTGCGTCTAACATTGAGAATTCCCACTATGACCTTTACCAGGTTCCCAAGAACGTG
GATTCTTCTAACCCTGACTCACCTGAGGGCAAGAGAGCATCAGGCCTTACTGCGGTGTGG
GTCGCTCGTAATCGGTTCGCTGTACTTGACCGAACGCACACGATCGTCATCAAGAGTTTG
AAGAACGACATAATGAAGAAGATACAAGTCCCTGGCGTAGATGAGATCTTCCATGCCGGT
ACTGGAGCACTTTTGCTACGAAGTGCAGATGGTGTAACACTCTATGATGTGCAACAGAAG
AGAACCCTTGCATCTGTAAAAATAGCCAAAGTAAAGTACGTTGTTTGGTCGAGTGATATG
TCCCATGTCGCCCTGCTTGCAAAACACAACATCGCGATTTGTAATCGGAAGTTGGAATCT
CTCTCCACGGTCCATGAGAACGTGAGAGTAAAGTCTGGAGCTTGGGAGGAGAGTGGTGTC
TTCATCTACACAACTTCAAACCATATCAAATACGCTCTTACTAATGGGGATCACGGCATC
ATACGAACTCTTGATCTTCCCATTTACATCACGAGAGTACGAGCCACGAACGTTTATTGT
CTCGATCGCGAAACTCGACCGAGGGTTCTGTCTATTGACCCAACGGAGTTTAAATTTAAG
ATGGCGCTAGTAAACAGAAAATACGACGAGGTGTTACACATGGTTCGCAACAGTAAACTG
GTTGGACAATCCATCATTGCTTATTTGCAACAGAAGGGTTACCCCGAGGTTGCTTTGCAT
TTTGTGAAGGATGACAAGACAAGATTCACCCTTGCTGTGGAATGCGGGGATATTGAGGTG
GCACTGGCTGCTGCGAAAGCTTTGGAAGACAAACAATGCTGGGAAAGACTCGCTGAAGTT
GCTCTCGCATGCGGAAACCACCAAGTGGTAGAAATGGCGTACAAACGAACGAAGAACTTC
GATAAGCTCGCTTTTCTTTACCTACTCACTGGAAACCTGGAAAATTTAAGAATGATGATC
AAGATTGCCGAGATCCGAAAAGATACATCCGGGCACTACCAGGCTGCTCTTTACCTTGGT
GATGTTGCCGAGAGAGTAAAAGTCCTCCGTGGATGCGGGCAGAAGTCTCTCGCTTACCTC
ACAGCGAAGACACATGGATTAGAAGAGGAGGCAAGTCAGTTGGAGGAAGAAGACTCTCCT
AGTGTCCCTGAGAACGCAGTTCTTCTCCAACCCCCTCCTCCTATTCAACAATGCAAAGAT
AACTGGCCCCTACTAACTGTCAGTAAAGGATTCTTCCAGGAGTCCCGAGTAGGGAAGGGA
GGTTCAGGTGGAGGACTTGCTGCGGATGTTGATATTGATGAAGACACAGCTGGATGGGGA
GATGATGTTGATATCATCCTGGATGAGGAAGGAGCAATCGTGGATGAGGAGTTTGAGGAT
GCAGATGATGGAGCAGGAGGAGAGGGAGGGGGCTGGGATGTTGATGATGATGATCTTGAT
CTTCCTGCTGATCTTGACATAGCTGCGGATGTTGGAGGAGAGGGAGAAGGATATTTTGTT
GCTCCTACTAAAGGAACACCTCAGTCACAAGTCTGGTGCAATAACTCCCAGTTACCTGTG
GATCATATAACTGCTGGATCATTCGACACAGCATTTAGGCTTCTTCAAGACCAAGTTGGC
GTTGTAGATTTCAAACCTTACAAGCAGCTATTCTTGCACACGTACGCCCGTGCACGCAGT
GCATTCACCGCTGTACCAGGTATACCCCCTATGTTTGGCAACCCACATCGAAACTGGAGG
GAGGCCGGAGCAAAATCGGGGTTACCGGTTGTTGGGCTTACCCTCGCTACCCTCGCTGCA
AGGCTACAGGATGCTTACAAACTAACCACGCAAGGTAAATTTGAGGATGCCATCGTTAAA
TTTCGTGAGATATTACTTTCTGTACCACTGCTGGTGGTAGATAACAAACAAGAAATAAAT
GAGGCACAGCAGCTCATCACTATATGTCGTGAGTATTTGGTTGGTCTATCTATGGAACAG
GAAAGGAAGAAACTTCCAAAATCGAACTTGAAAGAACAAATGAGGATCTGTGAGATGGCT
GCATACCTTACACACTGTCAGTGGCAACCTGTACATTTAATACTCGCACTAAGGACAGCT
CAGACTGTTTTCTTCAAGCTCAAGAATTATAAGAGTGCTGCGATTTTTGCTCGTCGATTA
TTAGAGCTTGGTCCGAAGCCCGACGTTGCATCCCAAACAAGAAAAATTATCGCTGCCTGT
GACAAGAACCCAATCGACACCCATGAACTAAGATACGACGCGCATAACCCATTCGATATT
TGCGCTGCTTCCTATATTCCTATATATAGGGGTAAACCCGTTGAGAAATGTCCGCTAAGT
GGAGCATGTTACGACCCAGATTTTAAGGGTGAAGTCTGTAGAGTCACAACTTGCACGGAG
ATAGGAAAAAGCTGCATGGGCTTGAGAGTCAGCGCTATACAGTTCCGCTAAATAGCCCTT
TGGATATCCCTGTTTTCTTCTTGAGATATATATGTACAGCACGTTATGCCTTGATCATTT
TGTCCCTATTTAAACTCTTGTGCAATTTGGGGCATTCTGCTATAGCAAGCAAGGGGGACT
GTAGAAATTCAAGATTCCTAAAGAAAGGCGTGACTTAAACCATATTATGTGGTGTTTATT
GCTTGTATGATTTGCGCATAGTATGAATCTTAATAAAATATATAACGAC
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[5-160] 5.6E-49 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[31-221] 6.33E-28 - T[309-379] 6.33E-28 |
| SMART |
WD40_repeat (IPR001680) - T[34-73] 2.4E-5 - T[78-117] 1.2E-8 - T[120-158] 41.0 |
| Pfam |
WD40_repeat (IPR001680) - T[39-72] 0.0023 - T[82-117] 7.4E-8 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[41-82] 11.712 - T[85-126] 15.287 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[41-126] 21.384 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[104-118] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[184-606] 1.8E-136 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[649-1056] 5.5E-177 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 71.348 % | 1611 | 0 |
| COPB2_HUMAN | 23.967 % | 151 | 2.78E-37 |