- Transcript 'KH2012:KH.C5.57.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.57.v1.A.ND3-1
Possible name(s)
LNX2; MPDZ; PATJ
Gene model
Location
KhC5 [3,700,120 / 3,728,901]
Amino acid sequence
Length: 2,006
>KH.C5.57.v1.A.ND3-1
TSIMPSQEELEKAALIIKRIQNQLKRQGDYSNDAELEAMKSLMESPLFKKMAQLQASIQQ
LKKEVKKDDFDINNVEFSHENGGLVVDGKEVENDSSMFNGRNGDLEEFIKSAAQGRETEM
IEIFKSENEGLGFSVVGLKSEHRGDLGIFVQDIRSGGVADRDGRLKESDQILVINNQPLT
QTISHQQAIGILQKVKGTVKLVVARGGIPQSQGHLSAEGSQVSRSSSILSSLSQASGMPP
DTKWTDVETIDLRNDGRGLGFGIVGGRSTGGVVVKTIVPGGAAHEDGRLKSGDHILRIGE
EDLMNMGSEEVAQVLRQCGAHVRLIVARGPVDDDDDVNDDLQDDKQDAGERGSVSSEDDS
HSSYSTDAQIFDVELVKDAKGLGITIAGFLPEDQNRNGTPGIYVKGVSSGSAADIDGRIR
PGDKLIAVDGKRLDGDDVSSDQAVEVLRSTGVVVRLTLARTTNRNETIFLHSFFFYLQQN
KSQPVSRQIVNERLQQEKEFEVIIRLSILFPGQELSPDEEERIKQKWRVVMGPQCDIVIA
QLKKYNYLSGLGISLEGTVDENEMPHHYIRSILPEGPVGQSNKLEAGDELLEVNGNHLLG
LSHVEVVVILKELPLTVRMVCARPKEHWTRDPARDSVVFEEKDGDFLEMKMPPINVNQFH
PQSSVSDSDETDVETSPKNEQEQLNSAWEDEVTVIELEKGDRGLGFSILDFQDPLHEDKT
AVLVRSLVDGGIAEQDGRLEPGDRLIFVNDKSLQFADLDQAVRVLKAVPQGRVLIGVTKP
RPMFRVPPSSDSEDAVEEEEVRTPVLPRPPSVRSSSSSSSSTSQEMQHYPMPSDSQYSAS
PVEMEVKLPGPPPPPPHIEPNPPTPEYEPPTPRYEPPTPRYEPPAHHFEPPQPQIVSEPL
QQSYEPPIQRYEPPQPQTPPESPPAAPHVIRTQSGKYTVKDYNRPARLSSSETNPVTTAN
QKVEVKQVQMSGMTAIAVTANTIQRKEEPQQPIIRQQEVFSSAPVVPPKPVGYTAPSWQT
AEPEKPKPKPPIDGFERIVQMSKGKSSLGITVSPDKEGDGLIVRSVITGGAVARAGEPNI
GDMIRRVNNDSATGLGAAQARSLIRNHSAYSADVKIAYIPKKYIEAFKLGLPVPEDSDVD
EDRRTPKTPSRVDHFAALKSVFEMQNGQQPQDASKFYLDSSLWGSTKRVDIRREAGQSLG
ISIVGGKNINANSQQQISLDNGDLIDGIFIKEIIEGSPVDVNGEMKPGDKILKVDGVDLS
NATHEGAVEAILKAGVHVVFHVQTFVGHPKQEPPPPQPEEESEIVKAERKYGHLPGEIHV
VEMVKGPAGVGLSLAGNKDRSQQQIFVVGVNPNGAAGKDGRVKVGDQLLEINHVPLNQRN
NHELASNVIKNAKSKLLFVINRQQKEARADKPLKKTPSVESSSHRRQSSDVPAEKSPPPP
KRSSSGGRHSPFSDVRVIKLVKDFQGLGFAISETPTGIVVQSIAPGGTADRDGRLVRGDH
ILAVDDQSVSGVSYETAISILKQSRGTVKLTVASGPVKSSASSDASSVTSSGHRLSTMSP
TLDSGSENSDPLTCPIIPGRETTIEINKGKAGLGVSIVGGSDSLLDAVLVHTVYEQGAAA
KDGRLWPGDRILTVNNHSLRHATHDEAIEVLRNTPGKVHLTILRDENRETINNESESDIY
DIYDVNLMKKSGRGLGLSIVGRKNAAGVFVSDLVQGGAAARDGTMKPGDQILSVNGVNIR
MAGQEVAAQLLKNAQGKVDLRIGRLKSGAPSDLIKMPKLSLSSNASEDAPKSPTDDLGGD
IRFVEIDKTPTQPLGISIAGGVGSPLGDVPIFVAVVQNHGAAAGKLKVGDRIRSINGQTT
DNKSHDEVVAMLKGQDDAIVLMQVQEGGESIKQLSEYLVQSAKPNLPISGQQGSQEKKEI
DIELNRGSDGLGFSIVGGHGSPHGDLPIYVKSVFSVGAAAVDGRLRRGDRIVSVNGEKLD
GYTHEEAAEALKRRATRIILRVVPST
Nucleotide sequence
Length: 6,417
>KH2012:KH.C5.57.v1.A.ND3-1
TTAGGACACTGAATTTTTAAACTAAAATCTGTGACTTTGGTGTTAAACAAGCATCATGCC
GTCGCAAGAAGAGCTTGAAAAAGCAGCTTTGATTATTAAACGGATTCAAAACCAGTTAAA
AAGGCAAGGTGATTATTCCAATGATGCTGAACTAGAAGCTATGAAGTCACTAATGGAGAG
TCCGCTGTTTAAGAAGATGGCACAACTTCAAGCTTCAATACAACAACTTAAAAAAGAGGT
AAAAAAAGATGACTTCGACATCAACAATGTTGAGTTTTCACACGAAAATGGTGGGTTGGT
GGTTGATGGTAAAGAGGTGGAAAACGATAGTTCAATGTTTAATGGTAGAAATGGAGATTT
GGAAGAATTTATTAAATCTGCTGCGCAAGGAAGGGAGACGGAAATGATTGAAATATTTAA
ATCGGAGAACGAAGGACTTGGGTTTAGTGTGGTTGGGTTGAAGTCAGAACACAGGGGTGA
CCTTGGAATATTTGTACAGGACATCAGGTCTGGTGGAGTGGCTGACAGGGATGGTAGGTT
GAAGGAAAGTGATCAAATACTTGTCATAAACAACCAACCACTCACGCAAACCATATCGCA
TCAGCAAGCAATTGGAATCTTGCAGAAAGTGAAAGGGACCGTCAAACTTGTGGTAGCACG
AGGGGGGATTCCCCAATCACAAGGCCACTTATCAGCGGAGGGGTCACAGGTGTCAAGGTC
ATCATCTATTCTAAGCTCTCTATCCCAAGCCTCAGGCATGCCTCCGGACACAAAATGGAC
CGATGTGGAGACGATTGATCTTCGCAATGATGGAAGAGGACTTGGATTCGGGATCGTTGG
AGGAAGATCAACTGGAGGAGTGGTGGTGAAGACTATTGTTCCTGGAGGAGCAGCTCATGA
GGATGGGAGGTTGAAGTCCGGGGATCACATTCTCAGGATCGGGGAGGAGGACCTGATGAA
CATGGGGTCCGAGGAGGTGGCACAGGTTCTAAGGCAGTGTGGAGCTCATGTTAGACTGAT
TGTGGCTCGAGGCCCTGTTGATGATGATGATGATGTAAATGATGATCTTCAGGATGATAA
ACAAGATGCAGGAGAAAGAGGATCTGTATCTTCTGAGGATGACTCACATTCTTCCTATTC
AACTGATGCTCAAATATTTGATGTAGAACTAGTGAAGGATGCCAAGGGTCTTGGAATTAC
TATTGCTGGCTTCCTTCCAGAAGACCAAAATCGCAATGGTACACCTGGTATATATGTAAA
GGGGGTATCATCTGGTTCTGCAGCTGATATTGATGGTAGGATTCGTCCTGGGGACAAACT
GATCGCTGTTGATGGTAAAAGATTGGATGGAGATGATGTATCAAGCGATCAAGCTGTGGA
AGTTTTACGATCAACTGGTGTGGTTGTACGACTCACTCTTGCAAGGACTACTAACAGAAA
CGAAACTATATTTTTACATAGTTTTTTTTTTTATTTACAGCAAAATAAGTCACAACCTGT
ATCCCGACAAATTGTGAATGAAAGACTTCAGCAAGAAAAAGAGTTTGAGGTAATTATAAG
GTTGTCAATTTTGTTCCCAGGTCAAGAGTTGAGTCCTGATGAAGAAGAAAGGATCAAACA
GAAGTGGAGGGTGGTGATGGGACCTCAGTGTGATATTGTGATTGCTCAACTAAAGAAATA
CAATTACCTGAGTGGACTCGGTATAAGTTTGGAGGGCACAGTGGATGAGAATGAAATGCC
ACATCATTATATAAGGTCCATTCTTCCTGAAGGGCCAGTTGGGCAGAGCAACAAGCTTGA
AGCTGGTGACGAACTTCTTGAAGTAAACGGCAACCATTTACTTGGTTTAAGCCACGTAGA
AGTGGTTGTCATCCTCAAGGAGCTTCCTCTTACAGTCCGTATGGTGTGTGCGAGACCTAA
GGAGCATTGGACACGAGATCCTGCGAGGGATTCAGTCGTTTTCGAGGAGAAAGATGGAGA
TTTTTTGGAGATGAAAATGCCGCCAATAAACGTCAACCAGTTCCATCCACAAAGTAGTGT
TAGTGACAGCGATGAAACAGATGTGGAAACTTCCCCAAAAAATGAGCAAGAACAGTTAAA
CAGTGCTTGGGAAGATGAAGTCACTGTTATTGAACTTGAGAAGGGTGATCGGGGTCTGGG
GTTTAGTATCCTGGATTTTCAGGACCCGTTACATGAAGACAAAACAGCAGTCCTTGTTCG
GTCTTTAGTGGATGGGGGTATTGCGGAACAAGATGGCCGACTTGAACCTGGTGATCGACT
TATATTCGTTAACGATAAATCGCTTCAGTTTGCCGACCTTGACCAGGCTGTCCGTGTTTT
AAAGGCTGTACCACAAGGTCGTGTATTGATTGGAGTAACTAAACCACGTCCAATGTTCAG
AGTTCCACCAAGTTCTGACAGTGAAGATGCAGTAGAAGAAGAGGAAGTAAGAACACCCGT
TCTTCCACGACCTCCATCAGTCAGATCGTCTTCCTCTTCATCATCTTCCACATCGCAGGA
AATGCAGCATTACCCCATGCCCTCTGACTCCCAGTATTCTGCCTCACCCGTTGAAATGGA
AGTCAAACTACCGGGACCTCCACCCCCTCCACCCCATATTGAACCCAACCCTCCAACCCC
AGAATACGAACCCCCAACACCCCGCTACGAGCCCCCAACGCCTCGTTACGAGCCCCCAGC
ACACCATTTTGAGCCTCCGCAGCCCCAAATTGTTTCCGAACCCCTACAACAATCTTACGA
ACCCCCAATCCAGCGTTACGAGCCCCCGCAGCCCCAAACACCCCCTGAAAGCCCACCTGC
TGCCCCCCATGTTATCCGCACTCAGTCAGGCAAATACACAGTTAAAGATTACAACAGACC
TGCGCGTTTGTCTTCATCAGAAACCAACCCTGTCACCACTGCCAATCAAAAGGTTGAAGT
GAAGCAAGTCCAGATGTCAGGCATGACAGCTATAGCAGTGACAGCAAACACAATACAACG
CAAGGAAGAACCTCAACAACCTATTATCAGGCAGCAAGAGGTGTTCTCATCTGCTCCAGT
GGTCCCCCCAAAACCAGTGGGTTATACTGCCCCCTCATGGCAGACAGCTGAACCTGAGAA
ACCGAAACCAAAACCTCCGATCGACGGGTTTGAACGAATTGTTCAAATGTCAAAAGGAAA
ATCAAGTTTAGGTATTACTGTCTCACCTGACAAGGAAGGCGACGGTTTAATTGTTCGTTC
CGTTATCACTGGAGGCGCTGTTGCACGGGCAGGGGAGCCAAACATAGGGGACATGATTCG
GCGTGTTAATAACGACTCAGCTACGGGATTAGGGGCCGCTCAAGCACGCTCGCTAATCCG
GAACCATTCAGCTTACAGCGCAGATGTCAAGATCGCCTACATCCCTAAAAAATACATTGA
GGCATTCAAACTTGGACTTCCTGTTCCGGAGGACTCAGATGTTGATGAAGATCGTCGGAC
ACCGAAAACTCCATCAAGAGTTGATCATTTTGCAGCACTTAAATCTGTATTTGAAATGCA
AAATGGACAGCAACCTCAGGACGCTTCAAAGTTTTATCTTGATTCCAGTTTGTGGGGTTC
TACAAAGAGAGTTGACATACGTAGAGAAGCAGGTCAATCACTTGGCATCAGTATTGTTGG
CGGGAAAAATATCAATGCAAACTCACAGCAACAAATATCACTGGATAATGGGGACCTTAT
TGATGGAATCTTCATCAAAGAAATAATAGAAGGAAGTCCAGTAGATGTGAATGGTGAAAT
GAAACCGGGCGACAAAATTTTAAAAGTTGATGGGGTTGATTTGAGTAACGCAACACACGA
GGGAGCAGTGGAGGCAATATTAAAAGCGGGCGTGCACGTTGTCTTTCATGTTCAAACGTT
TGTCGGGCATCCAAAACAGGAACCTCCCCCACCCCAGCCAGAAGAAGAGTCAGAAATTGT
GAAAGCAGAGCGGAAATATGGACATTTACCCGGAGAAATTCACGTCGTGGAAATGGTGAA
AGGCCCTGCTGGTGTTGGATTAAGCTTAGCTGGGAATAAAGACAGGTCCCAACAACAGAT
ATTTGTGGTTGGGGTTAACCCCAATGGAGCAGCGGGTAAAGATGGGCGTGTCAAAGTGGG
CGACCAACTACTGGAGATCAACCACGTTCCTTTGAACCAACGTAACAACCACGAACTTGC
GTCGAATGTGATCAAGAATGCAAAATCGAAACTTCTATTTGTGATCAATAGACAGCAGAA
GGAAGCACGAGCTGATAAACCTCTAAAGAAAACTCCTTCAGTAGAATCCTCATCCCATAG
GAGGCAGAGCTCTGATGTCCCCGCTGAGAAATCTCCTCCTCCTCCCAAACGCTCCAGCTC
TGGAGGACGACATAGCCCATTTTCTGACGTCAGAGTTATCAAGCTCGTAAAGGATTTCCA
AGGATTAGGCTTTGCGATCTCTGAAACCCCTACTGGTATAGTGGTTCAATCCATTGCACC
AGGTGGTACAGCAGATAGAGATGGTAGATTGGTAAGAGGAGATCATATACTTGCTGTGGA
TGATCAGTCTGTTAGTGGAGTCTCTTATGAAACGGCGATCTCCATATTAAAGCAGTCAAG
GGGAACAGTTAAACTTACTGTGGCATCTGGTCCAGTCAAGTCTTCTGCTTCATCAGATGC
CTCTTCTGTTACATCCTCCGGACACAGATTATCCACGATGTCCCCGACCCTGGATAGCGG
GAGTGAGAACTCTGACCCACTTACGTGCCCGATTATTCCAGGCAGGGAAACAACCATAGA
AATCAACAAAGGGAAGGCTGGACTTGGAGTGAGCATTGTGGGAGGATCTGACAGTTTGTT
GGATGCAGTGTTGGTGCACACAGTGTATGAACAAGGAGCTGCTGCAAAAGACGGAAGGTT
ATGGCCAGGTGACAGGATCTTAACAGTGAACAATCACAGTTTGCGTCATGCCACACATGA
CGAGGCAATCGAAGTATTGCGCAACACCCCGGGGAAGGTCCACCTTACTATCCTACGTGA
TGAAAACAGGGAGACAATTAACAATGAATCAGAGTCCGATATATATGATATCTATGATGT
AAATTTAATGAAGAAAAGTGGGCGAGGTCTCGGACTTAGCATTGTTGGAAGAAAAAACGC
AGCTGGTGTGTTTGTGAGTGACCTTGTACAGGGTGGTGCAGCAGCAAGAGATGGAACAAT
GAAACCTGGAGATCAAATACTAAGTGTTAATGGCGTCAATATAAGGATGGCTGGACAAGA
AGTAGCTGCACAATTGCTGAAGAATGCTCAGGGCAAAGTCGATCTCAGGATCGGAAGATT
AAAGTCCGGAGCTCCTTCTGATCTCATAAAGATGCCAAAGCTAAGTCTCAGTTCCAATGC
ATCTGAAGATGCTCCTAAGAGTCCCACTGATGATTTGGGAGGAGACATCCGATTCGTGGA
GATCGATAAGACCCCCACCCAACCACTTGGCATCAGTATAGCAGGTGGAGTTGGTTCTCC
TTTAGGGGATGTTCCCATTTTTGTAGCAGTTGTTCAAAACCATGGGGCAGCGGCAGGAAA
GTTGAAGGTTGGGGACAGAATACGAAGCATTAATGGACAGACTACAGATAACAAGTCACA
TGATGAAGTGGTAGCAATGCTGAAGGGTCAGGATGACGCTATTGTTCTAATGCAGGTGCA
AGAAGGTGGGGAAAGTATAAAACAACTAAGTGAATATCTTGTACAATCTGCCAAACCTAA
TTTACCAATCAGTGGACAACAAGGAAGCCAAGAAAAGAAGGAAATAGACATCGAGTTGAA
CCGGGGGTCTGATGGACTTGGTTTTAGTATCGTTGGAGGGCATGGATCACCACATGGGGA
TCTTCCTATTTATGTGAAGTCTGTGTTCTCAGTTGGAGCAGCAGCAGTGGATGGGAGGTT
ACGTAGGGGGGATCGGATTGTATCCGTGAACGGCGAGAAATTGGACGGTTATACGCATGA
GGAAGCGGCCGAGGCTCTCAAACGAAGAGCAACCCGTATCATACTTCGTGTAGTTCCGTC
CACATAACTCATCACACAGCCAACCCATCTTCAGTGTCAAACCTTGTACATTTTTTCATA
TTTTAAGTATTAATAATCATTTAATTTAATAATGATGTATACGTTTGTTCGTATGCTGGC
CATTGTCTTTATTATTCATATTTGTATTCAGCGGACTCTTATTATTTTTTACTAACACCA
CAATTTTGTATCCAGGTATATAAAACAACGAGATAGAATATCTGTTTTTTTCTTCATGTA
AAACTCGTATTCGTATTGCAGTGTATTCTCTCAATCAAGTATTTTTATGCGGAATCCAGT
CCGTTGCGTGTATCACTTAATAAATAACACACCATGTGCCATTTGTATGCATTATGT
| SUPERFAMILY |
L27_dom_sf (IPR036892) - T[9-65] 9.42E-10 |
| Pfam |
L27_2 (IPR015132) - T[16-65] 4.6E-9 |
| SUPERFAMILY |
PDZ_sf (IPR036034) - T[108-209] 5.52E-23 - T[221-331] 2.37E-24 - T[359-461] 3.02E-20 - T[527-629] 6.44E-18 - T[684-780] 7.1E-20 - T[1025-1107] 4.86E-12 - T[1172-1284] 1.05E-18 - T[1313-1405] 3.15E-19 - T[1436-1535] 6.57E-24 - T[1570-1667] 1.45E-26 - T[1681-1765] 1.45E-21 - T[1795-1890] 5.65E-21 - T[1907-2004] 5.39E-25 |
| ProSiteProfiles |
PDZ (IPR001478) - T[120-207] 20.687 - T[249-330] 20.245 - T[372-462] 19.983 - T[539-625] 16.767 - T[694-766] 17.189 - T[1038-1106] 13.009 - T[1188-1286] 18.737 - T[1320-1404] 18.134 - T[1457-1536] 19.521 - T[1583-1666] 22.596 - T[1684-1766] 21.913 - T[1803-1887] 17.772 - T[1921-2006] 21.31 |
| Pfam |
PDZ (IPR001478) - T[122-203] 8.9E-14 - T[253-326] 2.4E-14 - T[378-458] 6.6E-12 - T[547-619] 1.5E-9 - T[695-770] 6.4E-9 - T[1039-1108] 1.2E-6 - T[1189-1276] 3.4E-12 - T[1322-1400] 4.3E-12 - T[1465-1532] 6.7E-13 - T[1584-1663] 3.2E-15 - T[1685-1762] 3.4E-17 - T[1806-1880] 2.4E-13 - T[1921-1994] 2.0E-14 |
| SMART |
PDZ (IPR001478) - T[129-207] 9.2E-20 - T[257-330] 3.9E-19 - T[380-462] 1.6E-18 - T[549-625] 3.2E-16 - T[702-781] 7.8E-15 - T[1046-1120] 2.4E-4 - T[1197-1286] 1.9E-17 - T[1328-1404] 5.9E-14 - T[1465-1536] 4.4E-21 - T[1591-1666] 1.9E-22 - T[1693-1766] 1.9E-20 - T[1812-1887] 4.4E-13 - T[1929-2006] 2.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MPDZ_HUMAN | 42.189 % | 592 | 5.92E-177 |
| INADL_HUMAN | 37.164 % | 429 | 1.03E-122 |
| LNX2_HUMAN | 34.557 % | 229 | 3.42E-63 |