- Transcript 'KH2012:KH.L41.18.v1....' >
- Transcript 'KH2012:KH.C5.57.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.57.v2.A.SL5-1
Possible name(s)
LNX2; MPDZ; PATJ
Gene model
Location
KhC5 [3,700,120 / 3,706,804]
Amino acid sequence
Length: 618
>KH.C5.57.v2.A.SL5-1
IVTLVLHGLTMSEHKPLLSKQMQVSMINEVSSSSSSTSTSVKVVRRSVATAKSERELRYR
PKSMSMLTHSQYSKAEALKSSSLENVEWKEVSRSSKTKSWTLSTTSSINLGEILSRESSI
SSKTLETSVVPSLSTSSDPKPLKILEIEDSDLLSSDASSVTSSGHRLSTMSPTLDSGSEN
SDPLTCPIIPGRETTIEINKGKAGLGVSIVGGSDSLLDAVLVHTVYEQGAAAKDGRLWPG
DRILTVNNHSLRHATHDEAIEVLRNTPGKVHLTILRDENRETINNESESDIYDIYDVNLM
KKSGRGLGLSIVGRKNAAGVFVSDLVQGGAAARDGTMKPGDQILSVNGVNIRMAGQEVAA
QLLKNAQGKVDLRIGRLKSGAPSDLIKMPKLSLSSNASEDAPKSPTDDLGGDIRFVEIDK
TPTQPLGISIAGGVGSPLGDVPIFVAVVQNHGAAAGKLKVGDRIRSINGQTTDNKSHDEV
VAMLKGQDDAIVLMQVQEGGESIKQLSEYLVQSAKPNLPISGQQGSQEKKEIDIELNRGS
DGLGFSIVGGHGSPHGDLPIYVKSVFSVGAAAVDGRLRRGDRIVSVNGEKLDGYTHEEAA
EALKRRATRIILRVVPST
Nucleotide sequence
Length: 2,207
>KH2012:KH.C5.57.v2.A.SL5-1
ATTGTCACCCTAGTTCTTCATGGCCTGACCATGTCCGAGCATAAACCTCTGCTAAGCAAG
CAAATGCAAGTTTCAATGATAAACGAAGTCAGCAGCTCCAGCTCAAGCACCAGCACATCA
GTAAAGGTGGTTCGCAGAAGTGTTGCCACTGCAAAGTCAGAACGCGAGTTGCGTTACCGC
CCCAAGTCCATGTCCATGCTCACACACTCCCAGTATTCAAAGGCCGAAGCTCTGAAATCG
AGCAGTTTAGAGAACGTAGAATGGAAAGAAGTTTCTAGAAGCTCTAAGACAAAGTCCTGG
ACGTTGTCAACAACGTCCTCCATTAATCTTGGCGAAATACTCAGTAGAGAATCGAGTATT
TCCTCAAAAACTCTCGAAACAAGCGTTGTTCCTTCTCTTTCTACCTCATCTGACCCCAAA
CCTTTAAAAATCCTTGAAATTGAAGACAGTGATCTTCTTTCTTCAGATGCCTCTTCTGTT
ACATCCTCCGGACACAGATTATCCACGATGTCCCCGACCCTGGATAGCGGGAGTGAGAAC
TCTGACCCACTTACGTGCCCGATTATTCCAGGCAGGGAAACAACCATAGAAATCAACAAA
GGGAAGGCTGGACTTGGAGTGAGCATTGTGGGAGGATCTGACAGTTTGTTGGATGCAGTG
TTGGTGCACACAGTGTATGAACAAGGAGCTGCTGCAAAAGACGGAAGGTTATGGCCAGGT
GACAGGATCTTAACAGTGAACAATCACAGTTTGCGTCATGCCACACATGACGAGGCAATC
GAAGTATTGCGCAACACCCCGGGGAAGGTCCACCTTACTATCCTACGTGATGAAAACAGG
GAGACAATTAACAATGAATCAGAGTCCGATATATATGATATCTATGATGTAAATTTAATG
AAGAAAAGTGGGCGAGGTCTCGGACTTAGCATTGTTGGAAGAAAAAACGCAGCTGGTGTG
TTTGTGAGTGACCTTGTACAGGGTGGTGCAGCAGCAAGAGATGGAACAATGAAACCTGGA
GATCAAATACTAAGTGTTAATGGCGTCAATATAAGGATGGCTGGACAAGAAGTAGCTGCA
CAATTGCTGAAGAATGCTCAGGGCAAAGTCGATCTCAGGATCGGAAGATTAAAGTCCGGA
GCTCCTTCTGATCTCATAAAGATGCCAAAGCTAAGTCTCAGTTCCAATGCATCTGAAGAT
GCTCCTAAGAGTCCCACTGATGATTTGGGAGGAGACATCCGATTCGTGGAGATCGATAAG
ACCCCCACCCAACCACTTGGCATCAGTATAGCAGGTGGAGTTGGTTCTCCTTTAGGGGAT
GTTCCCATTTTTGTAGCAGTTGTTCAAAACCATGGGGCAGCGGCAGGAAAGTTGAAGGTT
GGGGACAGAATACGAAGCATTAATGGACAGACTACAGATAACAAGTCACATGATGAAGTG
GTAGCAATGCTGAAGGGTCAGGATGACGCTATTGTTCTAATGCAGGTGCAAGAAGGTGGG
GAAAGTATAAAACAACTAAGTGAATATCTTGTACAATCTGCCAAACCTAATTTACCAATC
AGTGGACAACAAGGAAGCCAAGAAAAGAAGGAAATAGACATCGAGTTGAACCGGGGGTCT
GATGGACTTGGTTTTAGTATCGTTGGAGGGCATGGATCACCACATGGGGATCTTCCTATT
TATGTGAAGTCTGTGTTCTCAGTTGGAGCAGCAGCAGTGGATGGGAGGTTACGTAGGGGG
GATCGGATTGTATCCGTGAACGGCGAGAAATTGGACGGTTATACGCATGAGGAAGCGGCC
GAGGCTCTCAAACGAAGAGCAACCCGTATCATACTTCGTGTAGTTCCGTCCACATAACTC
ATCACACAGCCAACCCATCTTCAGTGTCAAACCTTGTACATTTTTTCATATTTTAAGTAT
TAATAATCATTTAATTTAATAATGATGTATACGTTTGTTCGTATGCTGGCCATTGTCTTT
ATTATTCATATTTGTATTCAGCGGACTCTTATTATTTTTTACTAACACCACAATTTTGTA
TCCAGGTATATAAAACAACGAGATAGAATATCTGTTTTTTTCTTCATGTAAAACTCGTAT
TCGTATTGCAGTGTATTCTCTCAATCAAGTATTTTTATGCGGAATCCAGTCCGTTGCGTG
TATCACTTAATAAATAACACACCATGTGCCATTTGTATGCATTATGT
| SUPERFAMILY |
PDZ_sf (IPR036034) - T[181-279] 2.63E-27 - T[293-377] 3.42E-22 - T[407-502] 1.45E-21 - T[519-616] 1.13E-25 |
| ProSiteProfiles |
PDZ (IPR001478) - T[195-278] 22.596 - T[296-378] 21.913 - T[415-499] 17.772 - T[533-618] 21.31 |
| Pfam |
PDZ (IPR001478) - T[196-275] 7.1E-16 - T[297-374] 7.8E-18 - T[418-492] 5.5E-14 - T[533-606] 4.5E-15 |
| SMART |
PDZ (IPR001478) - T[203-278] 1.9E-22 - T[305-378] 1.9E-20 - T[424-499] 4.4E-13 - T[541-618] 2.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MPDZ_HUMAN | 51.178 % | 412 | 6.43E-127 |
| INADL_HUMAN | 48.98 % | 301 | 1.31E-88 |
| LNX2_HUMAN | 34.773 % | 229 | 1.59E-66 |