- Transcript 'KH2012:KH.C5.57.v2.R...'
Transcript Model
Transcript Id
KH2012:KH.C5.57.v2.R.ND4-1
Possible name(s)
LNX2; MPDZ; PATJ
Gene model
Location
KhC5 [3,700,120 / 3,706,801]
Amino acid sequence
Length: 617
>KH.C5.57.v2.R.ND4-1
VTLVLHGLTMSEHKPLLSKQMQVSMINEVSSSSSSTSTSVKVVRRSVATAKSERELRYRP
KSMSMLTHSQYSKAEALKSSSLENVEWKEVSRSSKTKSWTLSTTSSINLGEILSRESSIS
SKTLETSVVPSLSTSSDPKPLKILEIEDSDLLSSDASSVTSSGHRLSTMSPTLDSGSENS
DPLTCPIIPGRETTIEINKGKAGLGVSIVGGSDSLLDAVLVHTVYEQGAAAKDGRLWPGD
RILTVNNHSLRHATHDEAIEVLRNTPGKVHLTILRDENRETINNESESDIYDIYDVNLMK
KSGRGLGLSIVGRKNAAGVFVSDLVQGGAAARDGTMKPGDQILSVNGVNIRMAGQEVAAQ
LLKNAQGKVDLRIGRLKSGAPSDLIKMPKLSLSSNASEDAPKSPTDDLGGDIRFVEIDKT
PTQPLGISIAGGVGSPLGDVPIFVAVVQNHGAAAGKLKVGDRIRSINGQTTDNKSHDEVV
AMLKGQDDAIVLMQVQEGGESIKQLSEYLVQSAKPNLPISGQQGSQEKKEIDIELNRGSD
GLGFSIVGGHGSPHGDLPIYVKSVFSVGAAAVDGRLRRGDRIVSVNGEKLDGYTHEEAAE
ALKRRATRIILRVVPST
Nucleotide sequence
Length: 2,204
>KH2012:KH.C5.57.v2.R.ND4-1
GTCACCCTAGTTCTTCATGGCCTGACCATGTCCGAGCATAAACCTCTGCTAAGCAAGCAA
ATGCAAGTTTCAATGATAAACGAAGTCAGCAGCTCCAGCTCAAGCACCAGCACATCAGTA
AAGGTGGTTCGCAGAAGTGTTGCCACTGCAAAGTCAGAACGCGAGTTGCGTTACCGCCCC
AAGTCCATGTCCATGCTCACACACTCCCAGTATTCAAAGGCCGAAGCTCTGAAATCGAGC
AGTTTAGAGAACGTAGAATGGAAAGAAGTTTCTAGAAGCTCTAAGACAAAGTCCTGGACG
TTGTCAACAACGTCCTCCATTAATCTTGGCGAAATACTCAGTAGAGAATCGAGTATTTCC
TCAAAAACTCTCGAAACAAGCGTTGTTCCTTCTCTTTCTACCTCATCTGACCCCAAACCT
TTAAAAATCCTTGAAATTGAAGACAGTGATCTTCTTTCTTCAGATGCCTCTTCTGTTACA
TCCTCCGGACACAGATTATCCACGATGTCCCCGACCCTGGATAGCGGGAGTGAGAACTCT
GACCCACTTACGTGCCCGATTATTCCAGGCAGGGAAACAACCATAGAAATCAACAAAGGG
AAGGCTGGACTTGGAGTGAGCATTGTGGGAGGATCTGACAGTTTGTTGGATGCAGTGTTG
GTGCACACAGTGTATGAACAAGGAGCTGCTGCAAAAGACGGAAGGTTATGGCCAGGTGAC
AGGATCTTAACAGTGAACAATCACAGTTTGCGTCATGCCACACATGACGAGGCAATCGAA
GTATTGCGCAACACCCCGGGGAAGGTCCACCTTACTATCCTACGTGATGAAAACAGGGAG
ACAATTAACAATGAATCAGAGTCCGATATATATGATATCTATGATGTAAATTTAATGAAG
AAAAGTGGGCGAGGTCTCGGACTTAGCATTGTTGGAAGAAAAAACGCAGCTGGTGTGTTT
GTGAGTGACCTTGTACAGGGTGGTGCAGCAGCAAGAGATGGAACAATGAAACCTGGAGAT
CAAATACTAAGTGTTAATGGCGTCAATATAAGGATGGCTGGACAAGAAGTAGCTGCACAA
TTGCTGAAGAATGCTCAGGGCAAAGTCGATCTCAGGATCGGAAGATTAAAGTCCGGAGCT
CCTTCTGATCTCATAAAGATGCCAAAGCTAAGTCTCAGTTCCAATGCATCTGAAGATGCT
CCTAAGAGTCCCACTGATGATTTGGGAGGAGACATCCGATTCGTGGAGATCGATAAGACC
CCCACCCAACCACTTGGCATCAGTATAGCAGGTGGAGTTGGTTCTCCTTTAGGGGATGTT
CCCATTTTTGTAGCAGTTGTTCAAAACCATGGGGCAGCGGCAGGAAAGTTGAAGGTTGGG
GACAGAATACGAAGCATTAATGGACAGACTACAGATAACAAGTCACATGATGAAGTGGTA
GCAATGCTGAAGGGTCAGGATGACGCTATTGTTCTAATGCAGGTGCAAGAAGGTGGGGAA
AGTATAAAACAACTAAGTGAATATCTTGTACAATCTGCCAAACCTAATTTACCAATCAGT
GGACAACAAGGAAGCCAAGAAAAGAAGGAAATAGACATCGAGTTGAACCGGGGGTCTGAT
GGACTTGGTTTTAGTATCGTTGGAGGGCATGGATCACCACATGGGGATCTTCCTATTTAT
GTGAAGTCTGTGTTCTCAGTTGGAGCAGCAGCAGTGGATGGGAGGTTACGTAGGGGGGAT
CGGATTGTATCCGTGAACGGCGAGAAATTGGACGGTTATACGCATGAGGAAGCGGCCGAG
GCTCTCAAACGAAGAGCAACCCGTATCATACTTCGTGTAGTTCCGTCCACATAACTCATC
ACACAGCCAACCCATCTTCAGTGTCAAACCTTGTACATTTTTTCATATTTTAAGTATTAA
TAATCATTTAATTTAATAATGATGTATACGTTTGTTCGTATGCTGGCCATTGTCTTTATT
ATTCATATTTGTATTCAGCGGACTCTTATTATTTTTTACTAACACCACAATTTTGTATCC
AGGTATATAAAACAACGAGATAGAATATCTGTTTTTTTCTTCATGTAAAACTCGTATTCG
TATTGCAGTGTATTCTCTCAATCAAGTATTTTTATGCGGAATCCAGTCCGTTGCGTGTAT
CACTTAATAAATAACACACCATGTGCCATTTGTATGCATTATGT
| SUPERFAMILY |
PDZ_sf (IPR036034) - T[180-278] 2.5E-27 - T[292-376] 3.42E-22 - T[406-501] 1.45E-21 - T[518-615] 1.13E-25 |
| ProSiteProfiles |
PDZ (IPR001478) - T[194-277] 22.596 - T[295-377] 21.913 - T[414-498] 17.772 - T[532-617] 21.31 |
| Pfam |
PDZ (IPR001478) - T[195-274] 7.1E-16 - T[296-373] 7.7E-18 - T[417-491] 5.5E-14 - T[532-605] 4.5E-15 |
| SMART |
PDZ (IPR001478) - T[202-277] 1.9E-22 - T[304-377] 1.9E-20 - T[423-498] 4.4E-13 - T[540-617] 2.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MPDZ_HUMAN | 51.178 % | 412 | 6.05E-127 |
| INADL_HUMAN | 48.98 % | 300 | 1.64E-88 |
| LNX2_HUMAN | 34.773 % | 230 | 1.41E-66 |