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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA117YE02' > 
  2. Clone 'AHC0AAA204YI17' > 
  3. Clone 'csga062l05' > 
  4. Clone 'csef027k20' > 
  5. Transcript 'KH2012:KH.C5.57.v7.A...'

Transcript Model

Transcript Id

KH2012:KH.C5.57.v7.A.SL1-1

Possible name(s)

LNX2; MPDZ; PATJ

Gene model

KH2012:KH.C5.57

Location

KhC5 [3,700,120 / 3,720,612]

Sequences

Amino acid sequence

Length: 1,388

>KH.C5.57.v7.A.SL1-1
HLPEMPPMQNQVYESELPTPVNQFHPQSSVSDSDETDVETSPKNEQEQLNSAWEDEVTVI
ELEKGDRGLGFSILDFQDPLHEDKTAVLVRSLVDGGIAEQDGRLEPGDRLIFVNDKSLQF
ADLDQAVRVLKAVPQGRVLIGVTKPRPMFRVPPSSDSEDAVEEEEVRTPVLPRPPSVRSS
SSSSSSTSQEMQHYPMPSDSQYSASPVEMEVKLPGPPPPPPHIEPNPPTPEYEPPTPRYE
PPTPRYEPPAHHFEPPQPQIVSEPLQQSYEPPIQRYEPPQPQTPPESPPAAPHVIRTQSG
KYTVKDYNRPARLSSSETNPVTTANQKVEVKQVQMSGMTAIAVTANTIQRKEEPQQPIIR
QQEVFSSAPVVPPKPVGYTAPSWQTAEPEKPKPKPPIDGFERIVQMSKGKSSLGITVSPD
KEGDGLIVRSVITGGAVARAGEPNIGDMIRRVNNDSATGLGAAQARSLIRNHSAYSADVK
IAYIPKKYIEAFKLGLPVPEDSDVDEDRRTPKTPSRVDHFAALKSVFEMQNGQQPQDASK
FYLDSSLWGSTKRVDIRREAGQSLGISIVGGKNINANSQQQISLDNGDLIDGIFIKEIIE
GSPVDVNGEMKPGDKILKVDGVDLSNATHEGAVEAILKAGVHVVFHVQTFVGHPKQIILN
SKSCTHFTGGKLMEPPPPQPEEESEIVKAERKYGHLPGEIHVVEMVKGPAGVGLSLAGNK
DRSQQQIFVVGVNPNGAAGKDGRVKVGDQLLEINHVPLNQRNNHELASNVIKNAKSKLLF
VINRQQKEARADKPLKKTPSVESSSHRRQSSDVPAEKSPPPPKRSSSGGRHSPFSDVRVI
KLVKDFQGLGFAISETPTGIVVQSIAPGGTADRDGRLVRGDHILAVDDQSVSGVSYETAI
SILKQSRGTVKLTVASGPVKSSASSDASSVTSSGHRLSTMSPTLDSGSENSDPLTCPIIP
GRETTIEINKGKAGLGVSIVGGSDSLLDAVLVHTVYEQGAAAKDGRLWPGDRILTVNNHS
LRHATHDEAIEVLRNTPGKVHLTILRDENRETINNESESDIYDIYDVNLMKKSGRGLGLS
IVGRKNAAGVFVSDLVQGGAAARDGTMKPGDQILSVNGVNIRMAGQEVAAQLLKNAQGKV
DLRIGRLKSGAPSDLIKMPKLSLSSNASEDAPKSPTDDLGGDIRFVEIDKTPTQPLGISI
AGGVGSPLGDVPIFVAVVQNHGAAAGKLKVGDRIRSINGQTTDNKSHDEVVAMLKGQDDA
IVLMQVQEGGESIKQLSEYLVQSAKPNLPISGQQGSQEKKEIDIELNRGSDGLGFSIVGG
HGSPHGDLPIYVKSVFSVGAAAVDGRLRRGDRIVSVNGEKLDGYTHEEAAEALKRRATRI
ILRVVPST

Nucleotide sequence

Length: 4,517

>KH2012:KH.C5.57.v7.A.SL1-1
CACTTGCCTGAGATGCCACCAATGCAGAACCAAGTATATGAATCAGAGTTACCGACCCCA
GTCAACCAGTTCCATCCACAAAGTAGTGTTAGTGACAGCGATGAAACAGATGTGGAAACT
TCCCCAAAAAATGAGCAAGAACAGTTAAACAGTGCTTGGGAAGATGAAGTCACTGTTATT
GAACTTGAGAAGGGTGATCGGGGTCTGGGGTTTAGTATCCTGGATTTTCAGGACCCGTTA
CATGAAGACAAAACAGCAGTCCTTGTTCGGTCTTTAGTGGATGGGGGTATTGCGGAACAA
GATGGCCGACTTGAACCTGGTGATCGACTTATATTCGTTAACGATAAATCGCTTCAGTTT
GCCGACCTTGACCAGGCTGTCCGTGTTTTAAAGGCTGTACCACAAGGTCGTGTATTGATT
GGAGTAACTAAACCACGTCCAATGTTCAGAGTTCCACCAAGTTCTGACAGTGAAGATGCA
GTAGAAGAAGAGGAAGTAAGAACACCCGTTCTTCCACGACCTCCATCAGTCAGATCGTCT
TCCTCTTCATCATCTTCCACATCGCAGGAAATGCAGCATTACCCCATGCCCTCTGACTCC
CAGTATTCTGCCTCACCCGTTGAAATGGAAGTCAAACTACCGGGACCTCCACCCCCTCCA
CCCCATATTGAACCCAACCCTCCAACCCCAGAATACGAACCCCCAACACCCCGCTACGAG
CCCCCAACGCCTCGTTACGAGCCCCCAGCACACCATTTTGAGCCTCCGCAGCCCCAAATT
GTTTCCGAACCCCTACAACAATCTTACGAACCCCCAATCCAGCGTTACGAGCCCCCGCAG
CCCCAAACACCCCCTGAAAGCCCACCTGCTGCCCCCCATGTTATCCGCACTCAGTCAGGC
AAATACACAGTTAAAGATTACAACAGACCTGCGCGTTTGTCTTCATCAGAAACCAACCCT
GTCACCACTGCCAATCAAAAGGTTGAAGTGAAGCAAGTCCAGATGTCAGGCATGACAGCT
ATAGCAGTGACAGCAAACACAATACAACGCAAGGAAGAACCTCAACAACCTATTATCAGG
CAGCAAGAGGTGTTCTCATCTGCTCCAGTGGTCCCCCCAAAACCAGTGGGTTATACTGCC
CCCTCATGGCAGACAGCTGAACCTGAGAAACCGAAACCAAAACCTCCGATCGACGGGTTT
GAACGAATTGTTCAAATGTCAAAAGGAAAATCAAGTTTAGGTATTACTGTCTCACCTGAC
AAGGAAGGCGACGGTTTAATTGTTCGTTCCGTTATCACTGGAGGCGCTGTTGCACGGGCA
GGGGAGCCAAACATAGGGGACATGATTCGGCGTGTTAATAACGACTCAGCTACGGGATTA
GGGGCCGCTCAAGCACGCTCGCTAATCCGGAACCATTCAGCTTACAGCGCAGATGTCAAG
ATCGCCTACATCCCTAAAAAATACATTGAGGCATTCAAACTTGGACTTCCTGTTCCGGAG
GACTCAGATGTTGATGAAGATCGTCGGACACCGAAAACTCCATCAAGAGTTGATCATTTT
GCAGCACTTAAATCTGTATTTGAAATGCAAAATGGACAGCAACCTCAGGACGCTTCAAAG
TTTTATCTTGATTCCAGTTTGTGGGGTTCTACAAAGAGAGTTGACATACGTAGAGAAGCA
GGTCAATCACTTGGCATCAGTATTGTTGGCGGGAAAAATATCAATGCAAACTCACAGCAA
CAAATATCACTGGATAATGGGGACCTTATTGATGGAATCTTCATCAAAGAAATAATAGAA
GGAAGTCCAGTAGATGTGAATGGTGAAATGAAACCGGGCGACAAAATTTTAAAAGTTGAT
GGGGTTGATTTGAGTAACGCAACACACGAGGGAGCAGTGGAGGCAATATTAAAAGCGGGC
GTGCACGTTGTCTTTCATGTTCAAACGTTTGTCGGGCATCCAAAACAGATAATCCTTAAC
AGCAAAAGCTGTACTCACTTTACTGGTGGAAAACTCATGGAACCTCCCCCACCCCAGCCA
GAAGAAGAGTCAGAAATTGTGAAAGCAGAGCGGAAATATGGACATTTACCCGGAGAAATT
CACGTCGTGGAAATGGTGAAAGGCCCTGCTGGTGTTGGATTAAGCTTAGCTGGGAATAAA
GACAGGTCCCAACAACAGATATTTGTGGTTGGGGTTAACCCCAATGGAGCAGCGGGTAAA
GATGGGCGTGTCAAAGTGGGCGACCAACTACTGGAGATCAACCACGTTCCTTTGAACCAA
CGTAACAACCACGAACTTGCGTCGAATGTGATCAAGAATGCAAAATCGAAACTTCTATTT
GTGATCAATAGACAGCAGAAGGAAGCACGAGCTGATAAACCTCTAAAGAAAACTCCTTCA
GTAGAATCCTCATCCCATAGGAGGCAGAGCTCTGATGTCCCCGCTGAGAAATCTCCTCCT
CCTCCCAAACGCTCCAGCTCTGGAGGACGACATAGCCCATTTTCTGACGTCAGAGTTATC
AAGCTCGTAAAGGATTTCCAAGGATTAGGCTTTGCGATCTCTGAAACCCCTACTGGTATA
GTGGTTCAATCCATTGCACCAGGTGGTACAGCAGATAGAGATGGTAGATTGGTAAGAGGA
GATCATATACTTGCTGTGGATGATCAGTCTGTTAGTGGAGTCTCTTATGAAACGGCGATC
TCCATATTAAAGCAGTCAAGGGGAACAGTTAAACTTACTGTGGCATCTGGTCCAGTCAAG
TCTTCTGCTTCATCAGATGCCTCTTCTGTTACATCCTCCGGACACAGATTATCCACGATG
TCCCCGACCCTGGATAGCGGGAGTGAGAACTCTGACCCACTTACGTGCCCGATTATTCCA
GGCAGGGAAACAACCATAGAAATCAACAAAGGGAAGGCTGGACTTGGAGTGAGCATTGTG
GGAGGATCTGACAGTTTGTTGGATGCAGTGTTGGTGCACACAGTGTATGAACAAGGAGCT
GCTGCAAAAGACGGAAGGTTATGGCCAGGTGACAGGATCTTAACAGTGAACAATCACAGT
TTGCGTCATGCCACACATGACGAGGCAATCGAAGTATTGCGCAACACCCCGGGGAAGGTC
CACCTTACTATCCTACGTGATGAAAACAGGGAGACAATTAACAATGAATCAGAGTCCGAT
ATATATGATATCTATGATGTAAATTTAATGAAGAAAAGTGGGCGAGGTCTCGGACTTAGC
ATTGTTGGAAGAAAAAACGCAGCTGGTGTGTTTGTGAGTGACCTTGTACAGGGTGGTGCA
GCAGCAAGAGATGGAACAATGAAACCTGGAGATCAAATACTAAGTGTTAATGGCGTCAAT
ATAAGGATGGCTGGACAAGAAGTAGCTGCACAATTGCTGAAGAATGCTCAGGGCAAAGTC
GATCTCAGGATCGGAAGATTAAAGTCCGGAGCTCCTTCTGATCTCATAAAGATGCCAAAG
CTAAGTCTCAGTTCCAATGCATCTGAAGATGCTCCTAAGAGTCCCACTGATGATTTGGGA
GGAGACATCCGATTCGTGGAGATCGATAAGACCCCCACCCAACCACTTGGCATCAGTATA
GCAGGTGGAGTTGGTTCTCCTTTAGGGGATGTTCCCATTTTTGTAGCAGTTGTTCAAAAC
CATGGGGCAGCGGCAGGAAAGTTGAAGGTTGGGGACAGAATACGAAGCATTAATGGACAG
ACTACAGATAACAAGTCACATGATGAAGTGGTAGCAATGCTGAAGGGTCAGGATGACGCT
ATTGTTCTAATGCAGGTGCAAGAAGGTGGGGAAAGTATAAAACAACTAAGTGAATATCTT
GTACAATCTGCCAAACCTAATTTACCAATCAGTGGACAACAAGGAAGCCAAGAAAAGAAG
GAAATAGACATCGAGTTGAACCGGGGGTCTGATGGACTTGGTTTTAGTATCGTTGGAGGG
CATGGATCACCACATGGGGATCTTCCTATTTATGTGAAGTCTGTGTTCTCAGTTGGAGCA
GCAGCAGTGGATGGGAGGTTACGTAGGGGGGATCGGATTGTATCCGTGAACGGCGAGAAA
TTGGACGGTTATACGCATGAGGAAGCGGCCGAGGCTCTCAAACGAAGAGCAACCCGTATC
ATACTTCGTGTAGTTCCGTCCACATAACTCATCACACAGCCAACCCATCTTCAGTGTCAA
ACCTTGTACATTTTTTCATATTTTAAGTATTAATAATCATTTAATTTAATAATGATGTAT
ACGTTTGTTCGTATGCTGGCCATTGTCTTTATTATTCATATTTGTATTCAGCGGACTCTT
ATTATTTTTTACTAACACCACAATTTTGTATCCAGGTATATAAAACAACGAGATAGAATA
TCTGTTTTTTTCTTCATGTAAAACTCGTATTCGTATTGCAGTGTATTCTCTCAATCAAGT
ATTTTTATGCGGAATCCAGTCCGTTGCGTGTATCACTTAATAAATAACACACCATGTGCC
ATTTGTATGCATTATGT

InterProScan

SUPERFAMILY
PDZ_sf (IPR036034) - T[49-145] 4.6E-20 - T[390-472] 3.15E-12 - T[535-648] 7.76E-19 - T[695-787] 1.97E-19 - T[818-917] 4.21E-24 - T[952-1049] 8.94E-27 - T[1063-1147] 1.01E-21 - T[1177-1272] 3.55E-21 - T[1289-1386] 3.42E-25
ProSiteProfiles
PDZ (IPR001478) - T[59-131] 17.189 - T[403-471] 13.009 - T[553-651] 18.737 - T[702-786] 18.134 - T[839-918] 19.521 - T[965-1048] 22.596 - T[1066-1148] 21.913 - T[1185-1269] 17.772 - T[1303-1388] 21.31
Pfam
PDZ (IPR001478) - T[60-135] 4.1E-9 - T[404-473] 8.0E-7 - T[554-641] 2.2E-12 - T[704-782] 2.8E-12 - T[847-914] 4.3E-13 - T[966-1045] 2.1E-15 - T[1067-1144] 2.2E-17 - T[1188-1262] 1.6E-13 - T[1303-1376] 1.3E-14
SMART
PDZ (IPR001478) - T[67-146] 7.8E-15 - T[411-485] 2.4E-4 - T[562-651] 1.9E-17 - T[710-786] 5.9E-14 - T[847-918] 4.4E-21 - T[973-1048] 1.9E-22 - T[1075-1148] 1.9E-20 - T[1194-1269] 4.4E-13 - T[1311-1388] 2.1E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MPDZ_HUMAN 40.984 % 728 0
INADL_HUMAN 44.444 % 306 5.93E-85
LNX2_HUMAN 34.557 % 229 4.2E-63