- Transcript 'KH2012:KH.C6.101.v1....'
Transcript Model
Transcript Id
KH2012:KH.C6.101.v1.A.SL1-1
Possible name(s)
AC008695.1; RAPGEF2; RAPGEF6
Gene model
Location
KhC6 [770,916 / 796,030]
Amino acid sequence
Length: 1,793
>KH.C6.101.v1.A.SL1-1
FGKQIPGTKRRGCQCLVLESSEMIAIDYPDMAIHSSGMTSRPHAMLRHDTGHHSPRGALD
SVAEVDTSSAESSPLHQSRSNSMHKSSNGQIMVGGDNVSQFSKDTEEMDDYSEQDLEEED
SISLHSSSSIIIKDLVIDVLKKDISDRNGDDLEILLEFTKSLQAFSNLTEPIRRALCKVM
VFAWVEKAGTVVLKDNELLDSWSVIINGMYKSVKMGQKKTMGDSFGVQPTLQPQQHNGVM
YTMCDDCQFLCIAQPEYCQVLHQGQENIQNVYNEAGDLVMVKEKREFEGGTKIGNIVIRG
NADSLMHHLLEENSIDTTYTEDFLLTYRAFNNDPLKISNKLLEWFDSVMFRDKVIRVILL
WINNHFNDFECDWRMMNVLEKFEEKLHQANLHGQTKLFNIACTAKAQARTVTITRPSSEA
ELCFQILGGSEKNFPIYISSVLEGSEGETKGVKRGDLLLEVNGQNFEKLTLEKATAILKK
NTELRLTLKTSLFAFKEMVSELSNPQKKKKHKTDEKNIFFPPGQRGGRMSLTMMSETDAF
DQKHKKAGDAVQSACKEFGITEDLKDYALYRVSVQGEKFVKQSKLPDPLSKLADIPLGSR
YYLKNTMNSEQLLPDEQIPDLLKEANFSFLDLNCFEVAVFLTRKDYKMFQATASTDFIED
LFHLDAELTQFKAFEVPAKSNRLFEELQALMDPSRNMSKYRTLLNEMVSQPPVIPYIPVI
KKDLTFLDLGNDTKVEGLINFEKMRMIGKEVRNVCRLCAPDSTQILPSAAAQQRESEKGS
QNPIYLTLARRGRRSSFNNVRRLYEDQINVRRVKQYMQSIEVVSDEDKLMEMSKAVESVI
PSASNQQKRRNTTASLPSDSPSRSSKTLPAFPLRTSSNGSSSSLHSRNNSEPQLAAVPVI
ALHPTRKKMPVSSLPKFGANSPQALRKLLSLSEEGGGNDKTGGKKLGTRRNGSVSSHDLS
PATSPYMSPKRREDAQHSVANENINRNNNRLSLPTGVVAEPPSPSIQSAPINSRKFFPPG
GSSATSSSRSSIASASSLGTVSSSNPTHSSLSSLGGSSSPRSSSPVGWGQSGGTTGPQLG
PHPSHTHYHQQGRTSSSSSADTVKSGAGRHHERPVIKQTRNGRSSSFGGGGMMSSAMMSS
IPDRRMNQMSSSTSTPSLSAPGSHQPLILPNHPQMPRTPSIDSGIVSVGSISSDSTRFNP
SDDAEIFGRVHHHPGHQRQHPGRHLDQLHHRINEQSQLSPHLRHGRSNPPPQLEEEDKVE
QTFLSGFRGHGDTPRPDTKVPSNFYPQSVTHVDHGGHPGEPMTIYGHVPPGQSRPMYMMP
RNFGKSGVKGIHDYLICERHAMMRSRQIYANHHITYHRPEPVKTPEALLEDQLVLELQKQ
RPQLQRHKNSPISEDSNLSDKLSKSDPALNVPYPNPYEDPRIRLPPPARTSSPKSMIKQA
SLPHPSPLSPCNDNVFSHNHSYHTPNDSRSSFSTPNHSRPHITPPYPQNTPTSTPNTSRN
IPTRAEDPSLNWQYPSRDPPIPRPTTLNTTSPYLNYSAQHGESALQDPITPQYDPHSNQY
ELYPIPVDMTPNSSIITTPHLPHSTQVPQHLINGSPGPQLRRKTSQDWNETDLDGEKNQQ
TMKAWGSSASLPATPLTSKSNNPQNPLPPHTLQPTLLHGSSISALTVTSKTKKPAPAPPQ
RTSSFARSRQLRISSTTSPTSESPPLSPLTPTEHCSLDVSTTCNGWMGNGHVITNGYTPS
ETRVAPLERRSLPTYTEAVNQINLKQSRFPAPLNNYRSFNIDAHENTEQVSQV
Nucleotide sequence
Length: 5,768
>KH2012:KH.C6.101.v1.A.SL1-1
CTTTGGTAAACAAATACCTGGTACAAAACGTAGAGGTTGCCAATGTTTGGTTCTGGAATC
TTCTGAAATGATCGCAATTGATTACCCCGACATGGCAATACACAGCAGTGGAATGACCTC
TCGACCTCATGCCATGCTACGACATGACACCGGACATCATTCGCCACGAGGTGCACTTGA
CAGCGTCGCCGAAGTTGACACATCTTCAGCAGAGAGTTCACCCTTACACCAGTCTAGAAG
CAACAGTATGCATAAGTCATCCAATGGTCAAATAATGGTTGGGGGAGACAATGTATCTCA
GTTCTCAAAAGACACAGAAGAGATGGATGATTACTCAGAGCAAGATCTGGAGGAGGAAGA
TTCCATCTCACTTCATTCTTCTTCTTCCATCATCATCAAAGATCTTGTTATCGATGTTTT
AAAGAAAGATATTTCGGATAGAAACGGAGATGATTTAGAAATTCTTCTTGAATTCACAAA
AAGCTTGCAAGCGTTTTCAAATTTAACGGAACCCATACGAAGAGCTTTATGTAAAGTGAT
GGTTTTTGCATGGGTGGAAAAAGCTGGCACTGTTGTGCTTAAGGATAACGAATTGCTTGA
CTCATGGTCAGTTATAATCAACGGAATGTACAAGTCCGTAAAGATGGGACAGAAGAAGAC
TATGGGGGATAGTTTTGGTGTACAACCCACTCTCCAACCTCAGCAGCATAATGGAGTTAT
GTACACAATGTGTGACGATTGTCAGTTCCTGTGCATAGCCCAGCCCGAGTATTGCCAAGT
TCTCCATCAAGGTCAAGAAAATATACAGAATGTTTATAATGAAGCTGGAGATCTTGTTAT
GGTGAAAGAGAAGCGAGAATTTGAAGGCGGAACGAAGATTGGAAACATTGTTATTAGGGG
CAATGCCGACAGTTTAATGCATCACCTGCTCGAAGAGAATTCCATAGACACAACATATAC
AGAAGATTTTCTTCTAACGTACCGTGCTTTTAACAACGACCCGCTGAAAATATCAAACAA
ATTACTCGAGTGGTTTGACAGCGTTATGTTTCGAGATAAAGTTATCCGCGTTATACTTCT
CTGGATAAACAATCATTTCAATGACTTTGAATGTGACTGGCGTATGATGAATGTTCTGGA
GAAATTTGAGGAGAAATTACACCAAGCAAACTTGCATGGACAAACTAAGCTCTTTAACAT
TGCTTGTACAGCTAAAGCCCAAGCCAGAACCGTTACAATTACTCGTCCTTCCAGCGAGGC
AGAGCTTTGCTTCCAAATACTTGGGGGGTCTGAGAAAAACTTTCCTATCTACATTTCATC
TGTTCTAGAAGGTTCGGAGGGTGAAACTAAAGGGGTCAAACGAGGTGACTTACTGCTTGA
AGTAAACGGTCAAAACTTTGAAAAACTAACTCTAGAAAAAGCTACAGCGATTTTGAAGAA
AAACACAGAATTACGCCTTACTTTGAAAACAAGTTTATTTGCTTTCAAAGAGATGGTCTC
AGAACTGAGTAATCCTCAAAAGAAGAAAAAGCACAAAACGGATGAAAAAAACATCTTTTT
CCCTCCCGGGCAGCGTGGGGGTCGAATGTCTCTCACTATGATGAGTGAAACAGATGCTTT
TGACCAAAAACACAAAAAAGCAGGTGATGCTGTCCAATCGGCTTGCAAAGAGTTTGGCAT
AACAGAAGATCTTAAAGACTATGCTTTATACAGGGTGTCAGTACAAGGAGAAAAGTTTGT
GAAGCAATCTAAACTACCTGATCCACTTTCTAAACTGGCTGATATACCATTAGGCTCAAG
ATATTACTTGAAAAACACGATGAACAGTGAACAGCTCCTACCAGACGAGCAAATACCCGA
TCTTTTAAAAGAAGCAAATTTCTCATTTTTAGACCTAAACTGCTTTGAGGTTGCAGTATT
TCTGACACGTAAGGATTACAAAATGTTCCAAGCCACGGCTTCTACTGATTTTATTGAAGA
TCTTTTCCACCTTGATGCAGAACTTACACAGTTCAAGGCTTTTGAAGTGCCGGCAAAATC
AAACCGTTTATTTGAAGAGCTACAAGCCTTGATGGATCCGTCACGTAATATGTCAAAATA
CCGAACCCTGCTAAATGAGATGGTCTCTCAACCACCAGTGATACCTTATATACCAGTCAT
TAAAAAAGATCTCACATTTTTGGACCTCGGTAACGACACAAAGGTGGAAGGATTAATCAA
CTTTGAGAAAATGCGAATGATTGGAAAAGAAGTTCGGAACGTGTGTCGTCTCTGTGCACC
TGACAGTACCCAGATTCTACCCAGTGCCGCTGCGCAGCAGAGAGAGTCCGAAAAAGGCAG
CCAGAACCCTATCTACCTAACCCTGGCCCGCAGAGGACGTAGGTCTTCGTTTAACAATGT
AAGAAGACTTTACGAGGATCAGATAAACGTACGACGCGTCAAACAATACATGCAGTCAAT
AGAAGTCGTTTCCGATGAAGATAAATTAATGGAAATGTCGAAAGCTGTCGAATCTGTTAT
ACCGAGCGCCTCCAACCAACAAAAACGAAGAAACACAACCGCATCTCTTCCTTCGGACTC
CCCATCAAGATCCTCCAAGACTCTTCCAGCGTTCCCGCTCCGCACATCCTCTAACGGCTC
AAGCAGCAGTCTCCACTCGAGAAATAACTCTGAGCCTCAGCTCGCTGCTGTACCAGTAAT
AGCCCTTCATCCAACAAGAAAAAAGATGCCAGTTTCATCGCTCCCAAAATTTGGTGCCAA
TTCACCCCAAGCGTTACGAAAGCTTTTATCCCTTTCTGAAGAAGGAGGGGGCAACGACAA
AACTGGGGGTAAAAAACTGGGTACCCGGCGAAATGGGTCAGTCAGCAGTCATGATCTTTC
ACCCGCGACTTCACCCTACATGTCACCCAAGCGAAGAGAAGATGCGCAACACTCAGTAGC
AAACGAAAACATCAACAGAAACAACAACAGACTCAGTTTACCAACAGGTGTAGTAGCAGA
ACCCCCCTCCCCAAGCATCCAAAGTGCTCCGATAAACTCTCGCAAATTCTTCCCACCGGG
CGGCAGTAGCGCCACATCCAGCTCTCGTTCAAGTATCGCGAGCGCATCTAGTCTCGGGAC
AGTCTCGTCTTCAAATCCGACCCATTCGTCACTTTCCTCACTAGGAGGCAGTAGCAGTCC
ACGGTCATCGTCTCCAGTAGGTTGGGGCCAAAGTGGGGGAACCACCGGCCCCCAGTTGGG
GCCACACCCCTCACACACCCACTATCATCAGCAAGGTCGTACGAGTTCAAGTTCTTCGGC
AGATACTGTGAAATCAGGAGCTGGTCGCCATCATGAACGCCCTGTTATCAAACAAACACG
TAACGGACGAAGCAGCTCGTTTGGCGGTGGTGGTATGATGTCATCAGCGATGATGTCATC
GATCCCAGACCGAAGAATGAATCAGATGTCTTCTTCAACTTCCACTCCATCTCTAAGTGC
TCCTGGAAGCCACCAACCACTCATTTTACCCAACCACCCACAAATGCCACGAACACCAAG
TATTGACAGCGGCATCGTCAGTGTGGGGTCGATTTCATCCGATTCGACGAGATTTAATCC
TTCTGATGATGCTGAGATCTTTGGGAGAGTCCACCACCATCCAGGACATCAAAGGCAACA
TCCGGGAAGACATTTAGATCAGCTGCATCACAGGATCAACGAGCAGAGCCAGCTATCCCC
GCATCTTCGTCACGGAAGATCTAACCCTCCTCCTCAGTTAGAGGAAGAAGACAAAGTAGA
ACAGACTTTTTTATCTGGATTTAGGGGTCATGGGGATACCCCGCGACCAGATACTAAAGT
TCCCTCTAACTTTTACCCCCAATCGGTCACCCACGTTGACCATGGGGGTCACCCAGGTGA
ACCCATGACTATATATGGGCATGTGCCTCCTGGGCAGAGCAGACCAATGTATATGATGCC
GCGAAACTTCGGCAAAAGCGGCGTTAAAGGCATCCACGATTACTTAATCTGTGAACGGCA
TGCTATGATGAGAAGTCGGCAAATTTACGCGAATCACCATATAACATATCATCGCCCTGA
ACCAGTTAAAACACCAGAAGCATTACTAGAGGACCAACTCGTTCTAGAGCTGCAGAAACA
ACGTCCACAACTTCAGCGCCATAAGAACTCTCCGATTTCTGAAGACTCAAATTTATCCGA
CAAACTTAGTAAATCGGACCCAGCGTTAAATGTACCCTACCCTAACCCCTATGAAGACCC
CCGTATACGTCTACCCCCTCCAGCAAGAACATCATCCCCAAAATCGATGATAAAACAAGC
GTCGTTGCCCCACCCCTCACCCCTATCTCCCTGCAATGACAATGTGTTTTCCCACAACCA
CTCTTACCACACCCCTAACGACTCTAGAAGCTCATTTTCAACCCCCAACCACTCCAGACC
CCACATAACCCCACCTTACCCCCAAAACACCCCTACCTCTACCCCAAACACTTCACGAAA
TATACCCACTCGTGCGGAGGACCCATCCCTTAACTGGCAATACCCTAGTCGTGACCCCCC
AATTCCGAGACCCACTACCTTAAACACGACATCACCCTACCTAAATTACAGTGCCCAGCA
CGGAGAAAGCGCGTTACAGGACCCCATAACCCCACAATATGACCCCCATTCAAACCAATA
CGAATTATACCCCATCCCAGTCGACATGACCCCTAATAGCAGTATAATTACCACCCCCCA
TTTGCCCCATAGCACCCAAGTACCCCAACATTTGATAAACGGGTCACCAGGTCCACAGTT
ACGGCGTAAAACAAGCCAGGATTGGAATGAAACAGATCTAGATGGTGAAAAGAATCAACA
GACAATGAAAGCTTGGGGCAGCAGTGCCAGTTTACCGGCGACCCCTCTTACTTCAAAGTC
AAACAACCCCCAAAACCCCCTACCACCCCACACCCTTCAACCCACTTTATTGCATGGGAG
TTCTATCAGTGCACTGACAGTGACAAGTAAAACAAAGAAACCTGCGCCTGCACCACCACA
ACGCACATCAAGCTTTGCACGTTCCCGTCAACTTCGTATAAGCTCCACAACAAGTCCAAC
TTCAGAGTCACCACCTCTGTCACCCCTAACACCAACCGAGCATTGCTCTCTTGATGTTTC
AACCACTTGTAATGGTTGGATGGGCAATGGTCATGTGATCACTAATGGCTATACACCATC
CGAAACTCGTGTTGCACCTTTAGAACGCCGATCGCTCCCGACTTATACAGAAGCTGTCAA
TCAAATAAACTTGAAGCAAAGTCGCTTCCCTGCTCCTTTAAATAACTACAGATCTTTTAA
TATTGATGCACATGAAAACACAGAGCAAGTATCCCAAGTATGACATCATCATCTCATTAT
GACATCATCCCCTTATTAACGTCGCACGCCCTCTTTTCCGAGTTCCATTGCGACGTCGCT
TTTTACCCCGAGCTGTTTTATCGCTGTTTTAACGCCATTGAAATCTTATTTTGCTGACGT
TTGATGTCTATTATGTTGTGCCTTTATGCGTACTCTTGACTGTGCATTGAATTTTTTCAT
CTCTTTTCAAAAGACCCAACTCCCCGCCTTTTGGCTTGTTGCCATGACAACCTGGCTCTC
TGCATCCTCAAGTGACCACCAAGCCATAATAAACAGTGGGGAGTAGATACACCCCCTACA
GACCCTTATAATGAGTTTTTTGTTTAATTATCGCAACCAATTTTATCGCAATCTTTGTTA
AATGAAAG
| PANTHER |
RapGEF2 (IPR030739) - T[1-30] 1.3E-214 - T[112-488] 1.3E-214 - T[552-668] 1.3E-214 - T[676-937] 1.3E-214 |
| Gene3D |
RmlC-like_jellyroll (IPR014710) - T[143-270] 2.6E-40 |
| SUPERFAMILY |
cNMP-bd-like (IPR018490) - T[150-263] 1.76E-10 |
| SMART |
cNMP-bd_dom (IPR000595) - T[164-279] 1.2E-5 |
| CDD |
cNMP-bd_dom (IPR000595) - T[164-263] 2.08201E-7 |
| ProSiteProfiles |
cNMP-bd_dom (IPR000595) - T[164-226] 7.169 |
| SUPERFAMILY |
Ras_GEF_dom_sf (IPR023578) - T[291-426] 5.49E-55 - T[615-765] 5.49E-55 - T[808-837] 5.49E-55 |
| SMART |
Ras-like_Gua-exchang_fac_N (IPR000651) - T[293-405] 2.2E-10 |
| ProSiteProfiles |
Ras-like_Gua-exchang_fac_N (IPR000651) - T[293-409] 17.24 |
| Pfam |
Ras-like_Gua-exchang_fac_N (IPR000651) - T[298-382] 5.0E-7 |
| CDD |
Ras-like_Gua-exchang_fac_N (IPR000651) - T[303-388] 2.73659E-13 |
| SUPERFAMILY |
PDZ_sf (IPR036034) - T[407-491] 4.13E-16 |
| ProSiteProfiles |
PDZ (IPR001478) - T[410-480] 14.516 |
| Pfam |
PDZ (IPR001478) - T[411-488] 9.3E-11 |
| SMART |
PDZ (IPR001478) - T[420-492] 1.8E-11 |
| ProSiteProfiles |
RASGEF_cat_dom (IPR001895) - T[554-791] 13.618 |
| SMART |
RASGEF_cat_dom (IPR001895) - T[629-840] 5.6E-7 |
| Pfam |
RASGEF_cat_dom (IPR001895) - T[675-745] 9.6E-16 |
| ProSitePatterns |
Ras_G-nucl-exch_fac_CS (IPR019804) - T[714-743] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPGF6_HUMAN | 30.973 % | 172 | 7.37E-43 |
| RPGF2_HUMAN | 52.455 % | 414 | 1.03E-119 |