- Transcript 'KH2012:KH.S522.3.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Clone 'AHC0AAA186YN14' >
- Transcript 'KH2012:KH.C6.117.v1....'
Transcript Model
Transcript Id
KH2012:KH.C6.117.v1.A.SL1-1
Possible name(s)
SMAD1; SMAD4; SMAD9
Gene model
Location
KhC6 [1,051,078 / 1,057,737]
Amino acid sequence
Length: 540
>KH.C6.117.v1.A.SL1-1
NKPPGYPDQQIQTMQNPTTSNDACLSIVHSLMCHRQGGESESFAKRAIESLVKKLKEKKD
ELESLITAITTSGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHL
KVCKFAFDLKCDSVCINPYHYDRVVSPGIDLSGLTLQHTPAAAPLVSNDYQDLKITDVQG
NWMNQGKAEAMPLGPVQHQASEEYTSTSKAGTSNGISNGPVSGTMQYTPGASSFSTPSSS
APVNPNQAIGSASQQLIQYSQRNQHMSWQAGSTAKYTPEMSTPMTAPYYSPNDVPYLPVS
THPGPEFWCSITAYEMDVQVGETFKVPSSCPAVTVDGYVDPSGGNRFCLGQLSNVHRTEA
SEKARLHIGKGVQLVCHGEGDVWVKCLSDHAVFVQSYYLDREAGRSPGDAVHKIYPNAYI
KVFDLRQCHRQMQQQANTASAAANAQAAAVSGNIPGPGSVGGIAPAIGLPGLSAAAGIGV
DDLRRLCILRMSFVKGWGPDYPRQDIKQTPCWIEIQLHRALQLLDEVLHTMPIGEPHSHD
Nucleotide sequence
Length: 3,176
>KH2012:KH.C6.117.v1.A.SL1-1
GCGTTAGTGTGTGATTTGGACTGTGTGTGGTTTTAGAATAAACCGCCTGGATATCCAGAC
CAGCAAATACAAACAATGCAGAACCCTACGACGTCAAATGATGCGTGTTTAAGCATTGTA
CATAGTCTTATGTGCCACCGGCAAGGCGGGGAGAGTGAATCTTTTGCGAAGCGAGCAATC
GAAAGTTTGGTGAAAAAATTAAAAGAGAAAAAAGACGAATTAGAAAGTTTAATAACCGCC
ATTACAACTAGTGGTGCCCACCCTTCTAAATGTGTTACTATACAAAGAACCCTGGATGGA
AGGCTGCAGGTAGCCGGTCGCAAAGGTTTCCCCCATGTTATATATGCCCGTTTATGGCGA
TGGCCAGATCTTCACAAAAACGAGCTTAAACACCTAAAAGTCTGCAAATTCGCGTTTGAT
TTGAAATGCGACTCGGTGTGTATTAACCCCTACCACTATGATAGAGTGGTCTCGCCAGGA
ATTGATTTATCTGGACTCACTTTACAGCATACACCTGCTGCAGCTCCCTTGGTATCCAAC
GATTACCAAGATTTAAAGATAACTGACGTGCAAGGGAACTGGATGAACCAGGGCAAGGCT
GAAGCTATGCCATTGGGACCTGTACAACATCAAGCCTCAGAAGAATACACTAGTACCTCT
AAAGCAGGTACCTCGAATGGCATTAGCAATGGCCCTGTCTCTGGTACGATGCAATATACT
CCTGGAGCTTCCAGTTTTTCTACACCTAGCTCAAGCGCGCCAGTGAACCCTAATCAAGCT
ATTGGCAGTGCCTCGCAACAGCTTATACAATACAGTCAGAGAAATCAACACATGAGTTGG
CAAGCTGGCAGCACTGCGAAATACACACCAGAAATGAGCACGCCCATGACTGCACCTTAT
TATTCACCAAATGATGTTCCTTACCTACCAGTATCCACACATCCAGGCCCCGAGTTCTGG
TGTTCAATCACTGCATATGAGATGGACGTCCAAGTTGGTGAGACATTTAAAGTTCCATCT
TCGTGTCCAGCTGTTACTGTGGATGGTTATGTTGACCCTTCTGGTGGCAACAGATTTTGT
CTTGGTCAGCTATCAAACGTACATAGAACTGAAGCATCAGAAAAAGCAAGGTTACACATC
GGCAAAGGTGTCCAGCTAGTGTGCCATGGAGAGGGGGACGTTTGGGTGAAGTGTTTAAGT
GATCATGCAGTATTTGTACAAAGCTACTACCTTGATAGGGAAGCAGGCAGGTCACCAGGG
GATGCAGTTCATAAAATCTACCCAAATGCTTATATAAAGGTTTTTGATTTGCGGCAGTGC
CATAGACAGATGCAGCAACAAGCTAACACAGCTTCAGCAGCAGCAAACGCACAAGCTGCT
GCTGTATCAGGGAATATACCTGGACCTGGTTCTGTAGGTGGAATAGCCCCTGCTATAGGT
CTGCCAGGTTTATCAGCAGCTGCAGGCATAGGAGTGGATGATCTCCGTAGACTTTGTATT
CTTAGAATGAGTTTTGTAAAAGGCTGGGGGCCTGACTACCCTCGACAAGATATAAAACAA
ACGCCTTGTTGGATAGAAATACAACTGCATAGAGCCCTCCAATTACTTGATGAAGTTTTA
CACACAATGCCAATAGGGGAACCTCATTCTCATGACTGATGATATACAGCTAAGTGTAAA
CATATATAGATCATTGCCTTCAAAATATGTATGTTAGTAACAACATAACAATACTAAACT
GTTCCTCATTTTGTCCAAGTGAAAATCTTGTTTCAATTATTGGTTGAGTGTTTTATATGA
ATTTTTTTTGAATATTTAATAACTTTTCAAGTTTCTATGCTGTAACAATTTGGGTTATAT
CACATTATAAACTGTATTTGCAAAAGCCTATTTTTTTAGGTATGAATTTTTATTTAAAAA
GGGTTAGTTGAATTTTAACCAAAAAAAAAACAGTTAACATCTCTTTTTTGTCACAACTCA
CAAGAGCCTTTTTCTTTTTGATCATGTGACTTCTCTTCTATTTTGTTCAGTGTTTTGCAC
TACTAATTGAATGTGGTCTCTCTTATTTTTTAACTTTTTTCGTTAATGAGTACAACTTAA
TACAACTACACTCTTTCATTTCTGTATCTAAATACCCATTTTTCCATGTCGGACCAACCA
TTTGAACTGTATAAGCATGTAACATTAAATTAGTATTTTACTACTAATACACTATTAGCA
TAGGCGTCGTGCTTTTGAATTTTTAACAAAACAGGGGTTGCCATTTTTTTCCAAATGCAG
TTGGGTTCATAGCGAAAAACATAGGGAACTTCATTGATTAATGTGTCAAATGCAATATAC
TTTGTCTATGTTTGTTTGTATAGACACATAACAGCAAGGTAAAATGTATATTAAAATATA
AAAAAATGGGTTATAAAACACATTATATTACATCTGTTTTAAAACTTGGAGTGACATGCC
ACCCCAGGCACCCCTAAAGTGGCGTCTATGACTACTAGTAGCAAATCACCTTTAGCCTAA
ACTGAACAAATACATTTTTGAGTAAAAATCGTTACTTTTAATAATCTGTCCTAAAATTGT
AAAATGTTTGGCTATGGGTTGTTATTTGCCTTTCATACAGCATTATATTAGCATATGATG
TGTATTTAAATCGTGTGCCATCATTTTATGAACTATAACGTTACCATTGCCACTACAGCA
TGCCAATTACGTTACATACTATAGTACCAGTGCGGAACTTTGTTTTATTGTACATACCGT
ATTTACCGCTTGCAGTATGCTACCCCATGAGTTTACTTTTTCTTTTTTCCTTATATCTCT
CTTTTAAGAAGATAAAAATGGAAAAAGCCAAAAATCGCCCTTTAAACCTGTGGCTTTCTA
CCCAATGAGTTTACTTTTTTTCTTTTTTCCTAACCTCTCTTTTAAGAAGAGAAATGAAAA
AAAAAGCATATCACCTTTTGAACTTGGGGTCCCAATATTTTTACTCCAGTATTAAACGCA
CTGCCTTGTAACTCAAAACTAATTTGACCCTAGTTTTTGCCAGTTCTTTTTCAATACAAA
TGCGGTTGTGTATTTCAGTCTTGTTAAACACTCACTATGTATTTTGAAAGTCGGACCTTA
TATTTTATGCACGCATGAAATTCTCGTTTTGAAAATTAAACCCCACCCTGAACAAA
| PANTHER |
Dwarfin (IPR013790) - T[13-536] 9.0E-251 |
| Gene3D |
SMAD_MH1_sf (IPR036578) - T[17-148] 4.2E-62 |
| ProSiteProfiles |
MAD_homology_MH1 (IPR013019) - T[26-150] 35.763 |
| SUPERFAMILY |
SMAD_MH1_sf (IPR036578) - T[27-145] 4.18E-41 |
| SMART |
MAD_homology1_Dwarfin-type (IPR003619) - T[39-148] 1.4E-62 |
| Pfam |
MAD_homology1_Dwarfin-type (IPR003619) - T[45-145] 6.1E-39 |
| SUPERFAMILY |
SMAD_FHA_dom_sf (IPR008984) - T[282-532] 9.94E-90 |
| Gene3D |
SMAD-like_dom_sf (IPR017855) - T[299-537] 2.9E-112 |
| Pfam |
SMAD_dom_Dwarfin-type (IPR001132) - T[306-518] 2.3E-76 |
| SMART |
SMAD_dom_Dwarfin-type (IPR001132) - T[306-518] 6.3E-110 |
| ProSiteProfiles |
SMAD_dom_Dwarfin-type (IPR001132) - T[308-540] 64.904 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMAD4_HUMAN | 67.806 % | 668 | 0 |
| SMAD1_HUMAN | 37.958 % | 262 | 7.48E-82 |
| SMAD9_HUMAN | 36.75 % | 260 | 7.76E-81 |