- Transcript 'KH2012:KH.C6.125.v1....'
Transcript Model
Transcript Id
KH2012:KH.C6.125.v1.R.ND1-1
Possible name(s)
KDM2A; KDM2B; PHF8
Gene model
Location
KhC6 [1,750,702 / 1,755,070]
Amino acid sequence
Length: 906
>KH.C6.125.v1.R.ND1-1
IIKCNLNTLNENMSERYLRHKSVPVYDDDDAVEDEIDGKRTYDIKEKLESSKYDGEFLID
LKGHELTFERIQRYGLSDPLRIKDPDGLGMVMPDRSTFSVSDVRAFVGGRRMVDVMECKT
QRALEMSMRDFERYFEGSDRKYIYNVISLEFSQSRLESLIQRPKVVDALDWIDLVWPQHL
KHTQVEQTNRIHHMKYPKVQKYCLMSVAGCYTDFHIDFGGTSVWYHILKGGKIFWLIPPT
NENLQLYERWTLSGNQGDIFFADMVSRAQRLELVAGNSLMIPSGWIHAVYTPYDSIVFGG
NFLNSFNIPMQLRIAQVEERLKVPGRFRFPFFSEVLWYALDRYLHCLTKKTFLSEEFKEE
NHCIVKEKPDVEKEEEEYVHLTPFEYKGLQKLIETLEFLPEGKQSIPDGILNPLELIKTG
KSLLWNHSADDHEMSITGKSKVYWPVTIKPRDLHKLPRKPRTPSTSSTPGTKKPNASRVR
RVRCKQCEACQRGDCRECVFCKDMRKYGGPGTMKQTCILRRCINPILPSTAREEPVTVNQ
PTPFVESPVPPKPGKRGKKRLSSNESVVVPMKSTKLEEDVEEEDDDSDFSPPSKNQMPRV
VIARVSTGDLAKYAVRPADSSTEEDLAKLPTETETLSMNRTLWMHVFKYLNHTDLCSCML
VCKDFLRWCASPSLWKSVNLTGKQINSSTLQCLVRRTPTSINFSESNISYRQLMWLFERS
PSLRELYLIRCAWSTVAALNTAACPPLNLLDLSWAAGFTDPHLKQLLSAPTDVRPGQEIC
HTRLRFCRELSVAGTDITDVGLKLISHYLPHLKSVNISFCSVTSEGFGYLTSSNSSMPKI
LSVIISQHCHLMTDCALQNASKLPKISQLDFRGCTEVTEEACEDFIENFKLNLFMPEPLY
LVAQNT
Nucleotide sequence
Length: 2,981
>KH2012:KH.C6.125.v1.R.ND1-1
GTCACGTATTCACGTTTTAGATTTTCACAAAACTTTTTAATTATCTGAATAATTAAATGT
AATTTAAACACACTAAACGAAAATATGAGTGAACGTTACTTGCGGCACAAATCTGTGCCA
GTGTACGATGACGATGACGCAGTGGAGGACGAAATAGACGGAAAACGAACTTACGATATA
AAAGAAAAATTAGAAAGTTCAAAATACGACGGGGAATTTCTTATAGACCTCAAAGGACAT
GAGTTGACGTTTGAACGAATACAGCGTTATGGGTTGTCGGATCCATTGCGTATTAAAGAT
CCAGACGGTCTAGGTATGGTGATGCCAGACCGTTCCACATTTAGTGTTTCTGATGTGAGA
GCATTTGTTGGTGGACGACGTATGGTTGACGTTATGGAGTGCAAGACACAACGTGCTTTG
GAAATGTCCATGCGCGATTTTGAACGCTATTTTGAGGGTTCTGATCGAAAATATATCTAC
AATGTTATTTCTTTGGAGTTTTCTCAATCCAGATTGGAATCGTTAATTCAAAGACCAAAA
GTCGTTGATGCTCTGGACTGGATTGATTTGGTTTGGCCACAGCATTTAAAGCATACACAA
GTGGAACAGACCAATAGGATTCACCATATGAAATACCCAAAAGTACAAAAATACTGCCTC
ATGTCAGTAGCTGGGTGTTACACTGATTTTCATATTGATTTTGGCGGCACTTCGGTTTGG
TACCATATTTTAAAAGGCGGCAAAATTTTCTGGCTTATACCACCTACGAATGAAAACTTG
CAACTTTATGAGCGCTGGACACTTTCTGGTAATCAAGGAGATATTTTCTTCGCTGATATG
GTTTCTCGTGCCCAAAGGCTAGAACTGGTTGCAGGTAACTCTCTTATGATACCTAGTGGG
TGGATTCACGCAGTGTATACTCCTTACGATTCCATTGTTTTTGGTGGAAACTTTTTGAAC
TCTTTTAATATTCCAATGCAATTGAGAATTGCACAAGTAGAAGAGAGATTAAAAGTGCCC
GGACGGTTTCGTTTCCCTTTCTTTTCAGAAGTCCTTTGGTATGCTTTGGACCGGTACCTA
CACTGCCTCACTAAGAAGACGTTTTTATCTGAGGAATTTAAGGAGGAAAATCACTGCATT
GTAAAAGAGAAACCTGATGTGGAAAAAGAAGAAGAGGAATATGTTCATCTCACCCCATTC
GAATATAAAGGTCTTCAAAAACTTATTGAAACTTTAGAGTTTTTGCCGGAAGGAAAACAA
TCTATTCCTGATGGTATTTTAAACCCCTTAGAACTAATTAAAACGGGAAAGTCTCTGTTA
TGGAACCACTCTGCTGACGACCATGAAATGTCAATCACAGGAAAATCTAAAGTTTATTGG
CCAGTTACAATAAAGCCACGAGACTTGCACAAACTTCCCAGAAAACCAAGGACACCAAGC
ACAAGTTCCACGCCAGGCACTAAGAAACCAAACGCAAGTCGTGTACGAAGAGTTCGTTGC
AAGCAGTGTGAAGCATGCCAAAGAGGAGACTGCCGAGAGTGCGTGTTCTGCAAGGACATG
CGAAAATATGGTGGCCCTGGAACCATGAAACAAACATGTATTTTAAGAAGATGCATCAAC
CCAATACTGCCATCAACAGCCAGAGAAGAACCTGTAACAGTAAACCAGCCAACACCATTT
GTTGAGTCCCCAGTTCCTCCCAAGCCAGGAAAACGAGGCAAGAAACGGTTAAGCTCAAAT
GAGTCCGTAGTTGTCCCGATGAAGTCAACAAAATTGGAGGAAGATGTAGAAGAGGAAGAT
GATGACAGCGACTTTTCTCCACCTTCTAAGAACCAAATGCCACGAGTAGTAATTGCTCGT
GTTTCAACTGGCGATTTAGCGAAGTACGCGGTTCGGCCCGCTGATTCAAGCACAGAAGAA
GATTTAGCCAAGCTGCCAACTGAAACTGAGACCCTGAGCATGAACAGGACCCTTTGGATG
CATGTGTTTAAGTATTTGAACCATACAGACTTATGTAGTTGTATGCTAGTATGTAAGGAC
TTTCTACGCTGGTGTGCTTCACCCAGTTTATGGAAGAGTGTAAATTTAACCGGTAAACAA
ATCAATTCTTCAACACTGCAATGCTTGGTACGACGAACCCCAACAAGCATAAACTTCTCC
GAGTCTAACATCAGCTACAGGCAGTTGATGTGGTTATTTGAGCGATCTCCTTCTTTAAGA
GAGTTATACCTCATTAGGTGTGCATGGTCTACAGTTGCAGCACTGAATACAGCTGCCTGC
CCCCCTTTAAACCTCCTTGATTTATCCTGGGCAGCAGGGTTTACAGACCCCCATTTAAAA
CAACTTCTTTCTGCCCCTACAGATGTACGTCCTGGCCAGGAAATCTGCCACACAAGATTA
AGATTCTGCCGAGAGCTTTCAGTTGCCGGTACAGATATAACCGACGTAGGTTTAAAGTTA
ATTTCTCACTATCTACCACACCTCAAAAGCGTTAATATTAGCTTCTGCTCTGTAACCAGC
GAAGGGTTCGGTTACCTCACTTCTTCCAATTCAAGTATGCCGAAAATTCTTTCTGTTATA
ATTTCCCAACACTGCCACCTAATGACTGACTGTGCGCTTCAAAATGCTTCCAAACTCCCC
AAGATCTCACAGCTGGACTTCAGAGGCTGCACAGAAGTAACAGAAGAGGCGTGCGAAGAT
TTTATTGAGAATTTTAAACTGAATCTGTTCATGCCAGAACCTCTTTACTTAGTTGCACAA
AATACATAAGTAAAAATCATAATACATAAATAAAATTCATAAGAGCTTATTTGTAACCTC
AAATGCTAATTGCATGAAAGCTCCCTGTTGGGCAATATTTTAGTATTGCCTGTAAACCAG
AGTTTTTTTTACACTGCTTATTCAGTTTCATGTTGTACGAATTTCTTTATTTCTAAGTCA
CGTTTTTGTTCCGTTCGAAATAAAACAGCTTTTATTTTGAT
| SMART |
JmjC_dom (IPR003347) - T[151-319] 6.1E-30 |
| ProSiteProfiles |
JmjC_dom (IPR003347) - T[151-319] 28.709 |
| Pfam |
JmjC_dom (IPR003347) - T[202-302] 3.2E-5 |
| ProSiteProfiles |
Znf_CXXC (IPR002857) - T[477-523] 12.836 |
| Pfam |
Znf_CXXC (IPR002857) - T[478-522] 3.7E-13 |
| Pfam |
F-box_dom (IPR001810) - T[627-676] 4.1E-9 |
| Gene3D |
LRR_dom_sf (IPR032675) - T[635-894] 9.6E-36 |
| SMART |
Leu-rich_rpt_Cys-con_subtyp (IPR006553) - T[744-769] 260.0 - T[809-833] 11.0 - T[863-888] 35.0 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| KDM2A_HUMAN | 58.876 % | 449 | 2.96E-141 |
| KDM2B_HUMAN | 54.83 % | 421 | 3.23E-129 |
| PHF8_HUMAN | 45.238 % | 275 | 3.16E-78 |