- Transcript 'KH2012:KH.S115.36.v1...' >
- Transcript 'KH2012:KH.C5.191.v2....' >
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- Transcript 'KH2012:KH.C6.192.v1....'
Transcript Model
Transcript Id
KH2012:KH.C6.192.v1.B.ND1-1
Possible name(s)
CRB2; NOTCH2; SVEP1
Gene model
Location
KhC6 [1,164,797 / 1,173,431]
Amino acid sequence
Length: 545
>KH.C6.192.v1.B.ND1-1
MYGKARLLLRRRFLIILIYITYLQKYVTVYGATIGLTVVNENALVRNDVTSYLKCVTDNV
ELSHSAFSREQDTGSGTRMSSMTMVGPISPEEWPGKRLSMFADAGLHRTGVFSCQAKDPD
TNILTKVTAIKIGTSGEIWPEKFTQTVNRGDENVELVFKSFDPTIDVIWRFSGHVIGASN
QKLKKTIRRVTSRDAGIYECYKPPQDSSADLNEYWFGDKCQFHCKEGGSNHGDDAEECSG
RHFCLPDPYGCSCAAGFSGLECNNVVITWVFGFIHISCRLRVTKYVTLGNCINQCNCFND
EPCDGTDGQCASGRCKPPFTGSSCQVDSIDECESNPCQHGGTCNDKVFAYECKCINGTDG
VNCETDYDECLEEPCLNGGECTDTGPASFRCHCDSGYEGDRCEIDSDDCQGHKCVNGECV
DKLRTYECKCNAGYEGRYCETLCKIGTFFHEEYTACQLCPKHHYQDKEGQNFCTPCVQGS
KTNSEGSKSQSDCVHLPANGMSLVVVAGVLVGILVVVAAGIGGWYYWNQKSKTRLEHLGP
GRMVW
Nucleotide sequence
Length: 1,757
>KH2012:KH.C6.192.v1.B.ND1-1
ATGTATGGCAAAGCCAGATTATTGCTTCGTCGTCGGTTTTTAATAATTTTAATTTATATA
ACATATTTACAAAAGTATGTGACAGTATACGGCGCAACGATTGGTCTAACCGTGGTGAAC
GAAAACGCACTGGTGCGAAACGATGTGACGTCATACCTCAAGTGCGTCACTGATAACGTG
GAGTTGTCGCATTCTGCCTTCAGTAGAGAACAAGACACTGGATCCGGAACACGCATGTCC
TCTATGACAATGGTCGGCCCTATATCCCCGGAAGAATGGCCAGGAAAACGTCTAAGTATG
TTTGCTGATGCTGGCTTACATAGGACCGGCGTTTTCTCATGCCAAGCAAAAGACCCGGAC
ACGAATATCCTAACCAAAGTGACAGCTATTAAAATAGGCACCAGCGGAGAAATTTGGCCA
GAAAAGTTTACTCAGACGGTAAATAGGGGGGACGAAAACGTGGAGTTAGTTTTTAAATCC
TTCGACCCAACTATTGACGTGATATGGCGGTTCAGCGGTCACGTGATCGGCGCGTCCAAT
CAAAAGCTTAAGAAAACCATACGTCGTGTGACGTCACGAGACGCGGGGATTTATGAATGC
TATAAACCGCCACAAGATTCTTCAGCTGACTTAAACGAATACTGGTTTGGAGATAAATGT
CAATTTCATTGTAAAGAAGGCGGTTCAAACCACGGAGATGACGCTGAAGAATGTTCAGGT
CGTCATTTCTGTTTGCCCGATCCATATGGATGCTCATGCGCTGCAGGATTCAGTGGTCTG
GAATGTAATAACGTGGTTATAACATGGGTGTTTGGTTTCATACACATCTCGTGCCGCTTA
CGAGTTACCAAGTATGTAACTTTGGGGAACTGTATAAACCAATGTAATTGCTTCAATGAC
GAACCATGCGATGGAACAGACGGACAGTGCGCATCAGGTCGATGCAAACCTCCTTTTACT
GGAAGCAGTTGCCAGGTTGACTCTATCGACGAATGCGAGTCCAACCCATGCCAACACGGT
GGTACCTGCAATGATAAAGTGTTCGCTTATGAATGCAAATGCATTAACGGGACAGATGGC
GTTAACTGCGAAACTGATTACGACGAGTGTTTGGAAGAGCCTTGTCTAAACGGTGGCGAA
TGCACTGACACTGGCCCTGCAAGTTTCCGTTGTCACTGTGATAGTGGGTACGAAGGTGAC
AGATGTGAAATCGACAGCGACGATTGCCAAGGGCACAAGTGCGTCAATGGAGAATGCGTG
GATAAACTTAGAACCTATGAATGCAAGTGCAATGCTGGTTACGAAGGAAGATACTGTGAA
ACTCTGTGCAAAATTGGAACGTTCTTCCACGAAGAATATACGGCGTGTCAACTTTGCCCT
AAACATCACTACCAAGATAAAGAAGGACAAAATTTCTGCACGCCGTGTGTTCAAGGTTCA
AAAACCAACTCTGAGGGCTCAAAAAGTCAATCCGATTGTGTCCATCTGCCAGCTAACGGT
ATGTCCCTCGTCGTAGTAGCTGGTGTATTAGTCGGTATTCTGGTTGTTGTGGCCGCTGGT
ATAGGCGGATGGTATTACTGGAACCAAAAAAGCAAGACGAGACTGGAACACCTCGGTCCA
GGCAGAATGGTGTGGTGACGTCATTATTCTACGACGTCATTAAATCAAATGGCGTCTTGG
AACCGACGAACATAAAAAATACTTATGCCAGACGTTATGCTTATATGTTGTGTAATCGTC
GTTTGAAACTGAATAAA
| Gene3D |
Ig-like_fold (IPR013783) - T[136-211] 1.2E-9 |
| SMART |
EGF-like_dom (IPR000742) - T[223-263] 80.0 - T[331-364] 2.4E-4 - T[369-403] 2.3E-7 - T[408-440] 2.3E-4 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[234-263] 6.808 - T[328-364] 20.646 - T[366-403] 24.088 - T[405-440] 16.276 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[251-262] . - T[251-262] . - T[352-363] . - T[391-402] . - T[391-402] . - T[428-439] . |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[328-364] 4.6E-4 - T[366-403] 4.4E-9 - T[405-440] 3.4E-5 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[343-354] . - T[419-430] . |
| Pfam |
EGF-like_dom (IPR000742) - T[370-401] 7.4E-6 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[405-428] . |
| Pfam |
Tyr-kin_ephrin_A/B_rcpt-like (IPR011641) - T[446-493] 2.0E-11 |
| SMART |
Tyr-kin_ephrin_A/B_rcpt-like (IPR011641) - T[446-493] 6.3E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SVEP1_HUMAN | 37.383 % | 116 | 3.51E-27 |
| NOTC2_HUMAN | 39.394 % | 123 | 2.32E-29 |
| CRUM2_HUMAN | 49.219 % | 118 | 6.49E-28 |