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  1. Transcript 'Boleac.CG.SB_v3.S849...'
  2. Transcript 'Phfumi.CG.MTP2014.S3...'
  3. Transcript 'Harore.CG.MTP2014.S7...'
  4. Molecular Tool 'Dmrt>BMP2/4'
  5. Transcript 'KH2012:KH.C6.198.v3....'

Transcript Model

Transcript Id

KH2012:KH.C6.198.v3.A.SL2-2

Possible name(s)

ADGRB2; HMCN1; THBS1

Location

KhC6 [1,145,300 / 1,148,257]

Sequences

Amino acid sequence

Length: 382

>KH.C6.198.v3.A.SL2-2
QPVPAYDTSLRLSMFSNGNENTPFSPKGYLHHGNAMLVVGGCATAVIPCGTSKTNRDQCS
RFMCCWIPSRRLPSGQACFTSVYNFIKFPFAKWDNWGEWTTCTASACGTGTQTRTRTCID
GQVGQNGCEGSETDTQACQGSCTISWGAWAQWSTCQSAEPTCTSGTRSRSRVCVNQAGVT
QANTACTTGAASESETCNAQLCPAYTQWAGSCSVTCGGGIQNRARTCTTTPTGPIPSSCT
TIAGQACNTQSCNKDLDIMFIVDSSQQLDSCSAKEASLGQVAPFTPAGGLLTTANFPNFV
QQKTFLTSFFSIYKTVVAGRTNVGVLSRSGSCAAATSTNYHKIKALSDTYVPLQVKNFFL
FTHVIHLQNQVQFVWATNNYLA

Nucleotide sequence

Length: 1,361

>KH2012:KH.C6.198.v3.A.SL2-2
GTCAACCAGTGCCTGCCTACGACACCAGTTTAAGACTTAGCATGTTTTCGAATGGTAACG
AAAACACACCGTTCTCACCAAAGGGATATTTACACCACGGCAATGCAATGTTGGTGGTTG
GAGGATGCGCAACTGCAGTCATTCCATGCGGGACATCGAAAACGAACAGAGACCAGTGTA
GCAGATTCATGTGTTGTTGGATTCCAAGCAGGAGGCTACCATCAGGACAAGCTTGCTTTA
CCTCCGTTTACAACTTTATCAAGTTTCCATTTGCAAAGTGGGATAACTGGGGTGAATGGA
CTACATGCACTGCTTCAGCTTGTGGAACTGGAACACAAACCAGAACAAGGACTTGTATTG
ATGGACAAGTTGGACAAAATGGCTGTGAAGGAAGTGAAACTGATACACAAGCATGCCAAG
GTTCTTGTACAATATCATGGGGAGCGTGGGCTCAGTGGTCTACATGCCAAAGTGCTGAGC
CAACTTGCACATCGGGCACAAGGTCCAGATCTCGTGTATGTGTCAACCAAGCTGGTGTCA
CTCAAGCAAATACAGCGTGCACAACAGGTGCTGCATCAGAGAGCGAAACATGCAATGCCC
AATTATGTCCTGCTTATACTCAATGGGCTGGATCTTGCAGTGTAACCTGTGGAGGTGGGA
TCCAAAACCGTGCCCGAACTTGCACAACGACGCCTACAGGACCCATTCCATCATCATGTA
CTACTATTGCTGGACAAGCATGCAACACCCAGAGCTGCAACAAAGACTTAGACATCATGT
TCATTGTGGACTCTTCACAGCAACTTGACTCGTGCTCAGCAAAAGAGGCATCACTTGGAC
AAGTTGCGCCATTTACACCTGCAGGAGGACTTCTAACAACAGCCAATTTCCCCAACTTTG
TTCAACAAAAAACTTTTCTTACTTCGTTTTTCAGCATCTACAAGACTGTAGTTGCTGGCC
GAACTAACGTTGGGGTGTTGTCACGCTCAGGAAGCTGTGCAGCAGCTACTTCTACAAACT
ACCACAAAATTAAAGCACTGAGTGACACATATGTGCCGCTACAGGTTAAAAACTTTTTTC
TCTTTACACATGTGATCCACTTGCAAAATCAAGTCCAATTTGTTTGGGCCACTAACAATT
ACCTTGCTTAAAACTTTTATACACAATTAAAATATTTTATTTAGTTGACTCCTACAGTAC
CATCAATAAATCACCAACAATAACTTGACAAAAAATTTTAAATCTGAATTTCAAATAATT
TTCTATTCCAGGCTGAAGCAGCTATTTCTTACCTCTGTGGGTTCCCAGATTTTTTCTCAA
CCCTTGGTTGTGGTATTGAATACATCAAAACTGGCAACACT

InterProScan

ProSiteProfiles
TSP1_rpt (IPR000884) - T[90-139] 9.973 - T[143-203] 11.078 - T[204-253] 8.22
Gene3D
TSP1_rpt_sf (IPR036383) - T[91-142] 8.1E-9 - T[143-202] 6.8E-7 - T[204-256] 1.0E-7
SUPERFAMILY
TSP1_rpt_sf (IPR036383) - T[92-138] 8.24E-9 - T[145-202] 1.57E-6 - T[210-252] 1.7E-5
SMART
TSP1_rpt (IPR000884) - T[93-143] 1.0E-6 - T[146-203] 2.0E-4 - T[205-253] 0.0062
Pfam
TSP1_rpt (IPR000884) - T[95-140] 1.5E-6 - T[148-202] 3.6E-5 - T[210-252] 1.3E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
HMCN1_HUMAN 36.872 % 91.7 8.25E-20
AGRB2_HUMAN 34.32 % 86.7 3.04E-18
TSP1_HUMAN 36.207 % 85.1 8.55E-18





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