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TRANSCRIPT CARD

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  1. Clone 'cima878204'
  2. Transcript 'Moocul.CG.ELv1_2.S94...'
  3. Transcript 'KH2012:KH.C6.20.v1.A...'

Transcript Model

Transcript Id

KH2012:KH.C6.20.v1.A.nonSL5-1

Possible name(s)

LSM10; SNRPD1; SNRPD3

Location

KhC6 [1,079,025 / 1,080,750]

Sequences

Amino acid sequence

Length: 141

>KH.C6.20.v1.A.nonSL5-1
RSSKYFVVSFNSFSIFLSNSKVIMKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMN
THLKSVKMTVKNRDPVNLDTLSIRGNNIRYYILPDSLPLDTLLVDEGPKQPKGGFRDRGR
GKGLFQYSGFQELFTPAFPQT

Nucleotide sequence

Length: 1,081

>KH2012:KH.C6.20.v1.A.nonSL5-1
ATTTTCACGTCGATCGTACAAGTAACGTTCGTCAAAATATTTTGTCGTGAGTTTTAACTC
ATTTTCAATCTTTCTAAGCAATTCAAAGGTTATCATGAAGCTTGCAAGATTTTTGATGAA
ACTTAGTCACGAAACTGTGACAATTGAATTGAAAAATGGAACACAAGTGCATGGAACTAT
TACTGGTGTTGACATCTGCATGAACACACATTTAAAATCGGTGAAAATGACAGTAAAGAA
CCGAGATCCCGTAAACCTGGACACTTTGAGTATTCGTGGCAACAATATCCGTTATTACAT
CCTCCCAGACAGTCTTCCCCTTGATACACTGCTAGTGGATGAAGGACCAAAGCAACCTAA
AGGAGGATTTAGAGATCGTGGAAGGGGTAAGGGTTTATTTCAGTATTCTGGTTTTCAAGA
ACTGTTTACCCCAGCGTTTCCCCAAACTTAAAAAAGCCTAAACATTTGCCTCGACCCTTT
ACAATTATTTTCCCTATAATGCTTTGTGAATTCACGATAGAGACATCCTAGTTACAATCA
ATAATGTGCTTTGCGGTACCTCCTTTGAAACAGCAACCGTACCCTAGTTGATCCGTGGAC
ACCAGCACGCCTTTATCTCATAGGTTAGGGGTTCGAGGCTTAGCAGTAACTTTCTGCAAG
CCATGTGAGTATTTTGGCAAGATACTTAACAACAACAGTTGCTTGAATCAATTGCTCCTT
CATGGTTGTCTAAATTATCAGCCATACATTGCAAAAAATGATTTAACATTCTCACCTTTT
AGGTCGTGGTCGAGGACGTGGGCGTGGTCGTGGAGTTCGTGGGCGTGGCAGAGGCGGACC
ACCACGTCGATTTTAAACCAGAAAAATCATTCACTCATCTCTATCTTACGTATATTACAC
TTGAAGTAGAATGGATAATTTCATTCAATCTTTAGGTTTACGTTTATGGAGATGGACTTA
TTTGGATATTTGAAAATCGTGACTTTTATTGAATAAAACACCTGCTGCCGAGTTTTATAA
TTGAAGACGTTCGTTTTAGTGTAGTTTTTGTTGTGTCAAATTAAATGTAACGTAAAAGCA
A

InterProScan

PANTHER
LSm4/Sm_D1/D3 (IPR027141) - T[24-122] 1.1E-47
CDD
Sm_D1 (IPR034102) - T[25-110] 2.37494E-63
Pfam
LSM_dom_euk/arc (IPR001163) - T[28-92] 2.4E-18
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[28-124] 5.93E-24
SMART
LSM_dom_euk/arc (IPR001163) - T[28-93] 1.9E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMD1_HUMAN 87.209 % 158 3.23E-51