Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C6.20.v1.A.nonSL5-1

Possible name(s)

LSM10; SNRPD1; SNRPD3

Gene model

KH2012:KH.C6.20

Location

KhC6 [1,079,025 / 1,080,750]

Sequences

Amino acid sequence

Length: 141

>KH.C6.20.v1.A.nonSL5-1
RSSKYFVVSFNSFSIFLSNSKVIMKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMN
THLKSVKMTVKNRDPVNLDTLSIRGNNIRYYILPDSLPLDTLLVDEGPKQPKGGFRDRGR
GKGLFQYSGFQELFTPAFPQT

Nucleotide sequence

Length: 1,081

>KH2012:KH.C6.20.v1.A.nonSL5-1
ATTTTCACGTCGATCGTACAAGTAACGTTCGTCAAAATATTTTGTCGTGAGTTTTAACTC
ATTTTCAATCTTTCTAAGCAATTCAAAGGTTATCATGAAGCTTGCAAGATTTTTGATGAA
ACTTAGTCACGAAACTGTGACAATTGAATTGAAAAATGGAACACAAGTGCATGGAACTAT
TACTGGTGTTGACATCTGCATGAACACACATTTAAAATCGGTGAAAATGACAGTAAAGAA
CCGAGATCCCGTAAACCTGGACACTTTGAGTATTCGTGGCAACAATATCCGTTATTACAT
CCTCCCAGACAGTCTTCCCCTTGATACACTGCTAGTGGATGAAGGACCAAAGCAACCTAA
AGGAGGATTTAGAGATCGTGGAAGGGGTAAGGGTTTATTTCAGTATTCTGGTTTTCAAGA
ACTGTTTACCCCAGCGTTTCCCCAAACTTAAAAAAGCCTAAACATTTGCCTCGACCCTTT
ACAATTATTTTCCCTATAATGCTTTGTGAATTCACGATAGAGACATCCTAGTTACAATCA
ATAATGTGCTTTGCGGTACCTCCTTTGAAACAGCAACCGTACCCTAGTTGATCCGTGGAC
ACCAGCACGCCTTTATCTCATAGGTTAGGGGTTCGAGGCTTAGCAGTAACTTTCTGCAAG
CCATGTGAGTATTTTGGCAAGATACTTAACAACAACAGTTGCTTGAATCAATTGCTCCTT
CATGGTTGTCTAAATTATCAGCCATACATTGCAAAAAATGATTTAACATTCTCACCTTTT
AGGTCGTGGTCGAGGACGTGGGCGTGGTCGTGGAGTTCGTGGGCGTGGCAGAGGCGGACC
ACCACGTCGATTTTAAACCAGAAAAATCATTCACTCATCTCTATCTTACGTATATTACAC
TTGAAGTAGAATGGATAATTTCATTCAATCTTTAGGTTTACGTTTATGGAGATGGACTTA
TTTGGATATTTGAAAATCGTGACTTTTATTGAATAAAACACCTGCTGCCGAGTTTTATAA
TTGAAGACGTTCGTTTTAGTGTAGTTTTTGTTGTGTCAAATTAAATGTAACGTAAAAGCA
A

InterProScan

PANTHER	LSm4/Sm_D1/D3 (IPR027141) - T[24-122] 1.1E-47
CDD	Sm_D1 (IPR034102) - T[25-110] 2.37494E-63
Pfam	LSM_dom_euk/arc (IPR001163) - T[28-92] 2.4E-18
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[28-124] 5.93E-24
SMART	LSM_dom_euk/arc (IPR001163) - T[28-93] 1.9E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SMD1_HUMAN	87.209 %	158	3.23E-51