Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C6.20.v2.A.nonSL2-1

Possible name(s)

LSM10; SNRPD1; SNRPD3

Gene model

KH2012:KH.C6.20

Location

KhC6 [1,079,025 / 1,080,752]

Sequences

Amino acid sequence

Length: 144

>KH.C6.20.v2.A.nonSL2-1
RSSKYFVVSFNSFSIFLSNSKVIMKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMN
THLKSVKMTVKNRDPVNLDTLSIRGNNIRYYILPDSLPLDTLLVDEGPKQPKGGFRDRGR
GRGRGRGRGRGVRGRGRGGPPRRF

Nucleotide sequence

Length: 687

>KH2012:KH.C6.20.v2.A.nonSL2-1
GCATTTTCACGTCGATCGTACAAGTAACGTTCGTCAAAATATTTTGTCGTGAGTTTTAAC
TCATTTTCAATCTTTCTAAGCAATTCAAAGGTTATCATGAAGCTTGCAAGATTTTTGATG
AAACTTAGTCACGAAACTGTGACAATTGAATTGAAAAATGGAACACAAGTGCATGGAACT
ATTACTGGTGTTGACATCTGCATGAACACACATTTAAAATCGGTGAAAATGACAGTAAAG
AACCGAGATCCCGTAAACCTGGACACTTTGAGTATTCGTGGCAACAATATCCGTTATTAC
ATCCTCCCAGACAGTCTTCCCCTTGATACACTGCTAGTGGATGAAGGACCAAAGCAACCT
AAAGGAGGATTTAGAGATCGTGGAAGGGGTCGTGGTCGAGGACGTGGGCGTGGTCGTGGA
GTTCGTGGGCGTGGCAGAGGCGGACCACCACGTCGATTTTAAACCAGAAAAATCATTCAC
TCATCTCTATCTTACGTATATTACACTTGAAGTAGAATGGATAATTTCATTCAATCTTTA
GGTTTACGTTTATGGAGATGGACTTATTTGGATATTTGAAAATCGTGACTTTTATTGAAT
AAAACACCTGCTGCCGAGTTTTATAATTGAAGACGTTCGTTTTAGTGTAGTTTTTGTTGT
GTCAAATTAAATGTAACGTAAAAGCAA

InterProScan

PANTHER	LSm4/Sm_D1/D3 (IPR027141) - T[24-128] 1.9E-49
CDD	Sm_D1 (IPR034102) - T[25-110] 6.21856E-60
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[28-142] 3.89E-27
Pfam	LSM_dom_euk/arc (IPR001163) - T[28-92] 2.5E-18
SMART	LSM_dom_euk/arc (IPR001163) - T[28-93] 1.9E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SMD1_HUMAN	87.209 %	159	2.44E-51