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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C6.20.v3.A...'

Transcript Model

Transcript Id

KH2012:KH.C6.20.v3.A.SL6-1

Possible name(s)

LSM10; SNRPD1; SNRPD3

Gene model

KH2012:KH.C6.20

Location

KhC6 [1,079,025 / 1,079,921]

Sequences

Amino acid sequence

Length: 90

>KH.C6.20.v3.A.SL6-1
VDICMNTHLKSVKMTVKNRDPVNLDTLSIRGNNIRYYILPDSLPLDTLLVDEGPKQPKGG
FRDRGRGRGRGRGRGRGVRGRGRGGPPRRF

Nucleotide sequence

Length: 500

>KH2012:KH.C6.20.v3.A.SL6-1
GTGTTGACATCTGCATGAACACACATTTAAAATCGGTGAAAATGACAGTAAAGAACCGAG
ATCCCGTAAACCTGGACACTTTGAGTATTCGTGGCAACAATATCCGTTATTACATCCTCC
CAGACAGTCTTCCCCTTGATACACTGCTAGTGGATGAAGGACCAAAGCAACCTAAAGGAG
GATTTAGAGATCGTGGAAGGGGTCGTGGTCGAGGACGTGGGCGTGGTCGTGGAGTTCGTG
GGCGTGGCAGAGGCGGACCACCACGTCGATTTTAAACCAGAAAAATCATTCACTCATCTC
TATCTTACGTATATTACACTTGAAGTAGAATGGATAATTTCATTCAATCTTTAGGTTTAC
GTTTATGGAGATGGACTTATTTGGATATTTGAAAATCGTGACTTTTATTGAATAAAACAC
CTGCTGCCGAGTTTTATAATTGAAGACGTTCGTTTTAGTGTAGTTTTTGTTGTGTCAAAT
TAAATGTAACGTAAAAGCAA

InterProScan

SUPERFAMILY
LSM_dom_sf (IPR010920) - T[1-88] 1.61E-16
PANTHER
LSm4/Sm_D1/D3 (IPR027141) - T[1-74] 4.2E-31
Pfam
LSM_dom_euk/arc (IPR001163) - T[1-38] 7.8E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMD1_HUMAN 81.818 % 99.4 9.09E-29