Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C6.244.v1.A.nonSL2-1

Possible name(s)

CALM1; TNNC1; TNNC2

Gene model

KH2012:KH.C6.244

Location

KhC6 [356,593 / 359,148]

Sequences

Amino acid sequence

Length: 179

>KH.C6.244.v1.A.nonSL2-1
ALPQFRFTSIKRRVINEMSLPEELKNECTAAFEIFTKDSTDGKLGADELGKVMRMLGQSP
SDDEVQEIIRDFAEGDTLALDEFLDFMAKQLNGGQDKREEDLSKEFKLLLKETFRWYDTD
ADGIISWSELKTALKNTGEKIEDWEIDELMKDGDENMDKHIDFDEWINMMKELEGQIQC

Nucleotide sequence

Length: 740

>KH2012:KH.C6.244.v1.A.nonSL2-1
GCATTACCTCAGTTTAGATTCACAAGCATCAAGCGACGAGTTATCAACGAAATGTCTCTT
CCAGAAGAACTTAAGAACGAGTGCACCGCTGCGTTCGAAATATTCACCAAAGATTCTACC
GATGGTAAACTGGGTGCTGATGAACTTGGAAAAGTCATGAGAATGTTAGGACAATCACCA
AGCGACGATGAGGTCCAGGAAATCATCCGTGACTTTGCTGAAGGTGATACACTGGCGTTG
GATGAATTTCTTGATTTTATGGCAAAGCAGTTGAATGGTGGGCAAGACAAACGCGAAGAA
GATTTGAGCAAAGAATTTAAATTACTTCTGAAAGAAACCTTCCGTTGGTATGACACTGAC
GCCGATGGTATTATCAGCTGGAGTGAACTTAAGACGGCGCTAAAGAACACTGGAGAGAAA
ATCGAAGATTGGGAAATCGATGAACTCATGAAGGACGGAGATGAAAACATGGATAAACAT
ATTGATTTTGATGAATGGATCAACATGATGAAGGAATTGGAAGGCCAAATACAATGCTAA
TGTTTCGCTGTAAATACCATGCATTTCACAGTGTTTTGCACAATTTTGTTTTGAGTAATG
TTCATTACAATAAACTTAAAACGTATACGTTTTATTGAACAATGCGTCAATAGATTTAAA
CTAATCTCAACGTGAACGAAAATATCAACAGAAATAAATAGTTGGAATGGTTACAAAATA
AAACAAAACTTTAAAATAAA

InterProScan

SUPERFAMILY	EF-hand-dom_pair (IPR011992) - T[17-176] 8.79E-31
ProSiteProfiles	EF_hand_dom (IPR002048) - T[23-59] 7.372 - T[105-140] 11.919 - T[145-176] 9.66
SMART	EF_hand_dom (IPR002048) - T[27-56] 22.0 - T[109-137] 0.5 - T[145-173] 0.028
CDD	EF_hand_dom (IPR002048) - T[27-88] 4.05699E-8 - T[110-171] 1.30963E-11
Pfam	EF_hand_dom (IPR002048) - T[41-89] 0.015 - T[110-136] 1.5E-5
ProSitePatterns	EF_Hand_1_Ca_BS (IPR018247) - T[118-130] . - T[154-166] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CALM1_HUMAN	37.908 %	95.5	1.62E-25
TNNC1_HUMAN	46.203 %	117	1.06E-33
TNNC2_HUMAN	41.935 %	103	2.24E-28