- Transcript 'KH2012:KH.C1.1192.v1...' >
- Transcript 'KH2012:KH.C2.257.v2....' >
- Transcript 'KH2012:KH.C6.198.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C7.222.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.222.v1.A.ND1-1
Possible name(s)
DAW1; PAFAH1B1; SPAG16
Gene model
Location
KhC7 [6,086,131 / 6,091,552]
Amino acid sequence
Length: 606
>KH.C7.222.v1.A.ND1-1
MTSEAEDGPFFLEKVSVLGDSDDEYQYEEVPVDDLSVGSTDHLDGFDKTILSIEESKQDE
KAAIRVEGPPVASLIHRPEVIDDFVRNFLLRMGMKRTLQSFQTEWYEMQQKGLLGNEDIG
VVPDAYCRNQTLGDEVKRLKSELQKYMTAASKAKDTHVKLQKERDFHRINHKRAVQEKNR
LITDIKRLKKHYNSYEPTLRELKHKYELAMKEKMLTKLERDRAVGQVTGLQATLRNLETG
KEVMLPPVSGYRAQRSANRGGPTQSALREARGSVENKREQPKTSNTQDSEFPTDSRVNPY
LTHAKGPPTHLTRTGGFRQTGSIRGHDLAISSVSLHPRKQIAVTTSDDHQWKMWAVPSGD
IIMTGEGHTDWISDSDFHPSGAQLATSSGDACVKVWDFSKASCVLTLPDHTHAVWGVSWH
SCGDFLASCSMDNTSKIWDVHSERCRSTLRGHADSVNSIQFLHFANTLLTASADKTLSLW
DARTGLCAQTFYGHLHSVNNAVFNLKGDTIGSCDSYGTVKFWDVRHVAPMITVDVGPHPA
NRVAFDPSGHLLAVASNDGTIKMVEVGTSDVTMLAGHDDAVQAVTFDIGGQFMLSGGSDG
SMRVWS
Nucleotide sequence
Length: 1,821
>KH2012:KH.C7.222.v1.A.ND1-1
ATGACGTCAGAAGCTGAAGATGGACCGTTTTTTCTTGAAAAAGTTTCCGTTCTTGGGGAT
TCTGATGATGAATATCAATATGAAGAGGTCCCTGTGGACGACCTGAGCGTTGGCTCTACT
GATCATCTTGATGGCTTTGATAAAACGATTCTTTCAATCGAGGAATCAAAACAAGATGAA
AAAGCTGCCATCCGCGTAGAGGGCCCTCCAGTGGCCTCGTTGATCCACCGCCCCGAAGTG
ATCGATGATTTCGTCCGAAACTTTTTGCTTCGAATGGGAATGAAGAGAACGCTTCAAAGT
TTCCAAACAGAATGGTACGAGATGCAACAGAAGGGGTTGCTCGGCAACGAGGATATTGGG
GTCGTGCCGGATGCTTATTGCAGGAACCAGACACTAGGGGACGAGGTGAAAAGATTGAAA
TCAGAGTTACAGAAATACATGACGGCTGCAAGCAAAGCCAAGGACACTCACGTCAAGTTG
CAGAAAGAACGAGATTTCCACCGAATCAACCACAAGAGGGCAGTGCAGGAAAAGAATCGA
CTAATTACCGATATAAAGAGGTTAAAGAAACATTACAATTCATACGAACCAACGTTGAGG
GAACTTAAACATAAATACGAGCTCGCTATGAAAGAGAAGATGTTGACCAAGCTGGAGAGG
GATCGCGCTGTGGGGCAGGTGACTGGGTTACAAGCTACTTTGCGGAATTTAGAAACGGGT
AAGGAGGTTATGCTGCCCCCGGTGTCGGGGTATCGCGCGCAACGATCGGCGAACCGTGGT
GGTCCGACACAATCAGCATTGCGCGAAGCTCGGGGGAGTGTAGAGAACAAACGGGAACAG
CCGAAAACATCGAACACTCAAGATAGTGAGTTCCCCACAGACTCGAGGGTCAACCCATAT
TTAACCCACGCCAAGGGACCCCCAACCCACTTAACAAGGACGGGGGGTTTCAGGCAAACG
GGGTCAATCAGGGGTCATGACCTTGCAATTAGCAGTGTCTCGTTACACCCTCGTAAACAG
ATCGCGGTAACAACATCTGACGACCACCAGTGGAAGATGTGGGCGGTACCTAGTGGTGAT
ATTATTATGACGGGGGAGGGACACACAGACTGGATATCCGACTCGGATTTCCACCCAAGT
GGAGCGCAGCTAGCGACCTCTAGTGGTGACGCTTGCGTCAAAGTTTGGGATTTCTCGAAA
GCTTCGTGCGTGCTCACCTTGCCCGACCACACCCATGCAGTGTGGGGGGTGTCGTGGCAC
TCGTGTGGCGACTTCCTGGCTTCTTGTTCCATGGATAATACATCAAAGATATGGGATGTG
CACAGTGAAAGGTGTCGTTCCACGCTTCGCGGACACGCAGATTCTGTCAACAGTATTCAG
TTTCTACATTTCGCGAACACCCTACTAACAGCATCGGCCGATAAAACTTTGTCATTATGG
GATGCTCGTACCGGACTTTGTGCACAAACATTCTACGGCCATCTTCACTCCGTCAACAAT
GCCGTATTTAACCTTAAGGGTGATACCATCGGATCGTGCGACAGTTACGGGACGGTCAAG
TTTTGGGACGTGCGCCATGTTGCCCCGATGATCACCGTGGATGTGGGACCTCACCCCGCT
AATAGGGTCGCGTTTGACCCATCAGGCCACCTCCTGGCCGTTGCTAGTAACGACGGAACG
ATAAAGATGGTTGAAGTTGGTACGAGTGATGTCACAATGCTAGCGGGTCACGACGACGCT
GTGCAAGCCGTGACCTTTGACATCGGGGGTCAATTTATGTTAAGCGGGGGGTCAGATGGG
AGTATGCGAGTTTGGTCGTAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[310-427] 3.0E-27 - T[428-606] 2.6E-47 |
| SMART |
WD40_repeat (IPR001680) - T[316-355] 0.0073 - T[358-397] 3.7E-8 - T[400-439] 3.7E-9 - T[442-481] 1.6E-8 - T[484-523] 0.0026 - T[526-565] 0.047 - T[567-606] 1.3E-5 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[318-605] 9.31E-72 |
| Pfam |
WD40_repeat (IPR001680) - T[319-354] 0.16 - T[362-397] 3.6E-4 - T[402-439] 4.3E-6 - T[444-481] 1.2E-5 - T[541-563] 0.095 - T[573-606] 5.8E-4 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[323-606] 57.844 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[323-364] 11.511 - T[365-406] 13.683 - T[407-448] 13.148 - T[449-490] 14.418 - T[491-532] 9.005 - T[574-606] 15.889 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[384-398] . - T[426-440] . - T[468-482] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[426-440] 1.0E-6 - T[468-482] 1.0E-6 - T[593-606] 1.0E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPG16_HUMAN | 47.927 % | 598 | 0 |
| DAW1_HUMAN | 31.01 % | 142 | 5.01E-37 |
| LIS1_HUMAN | 33.462 % | 145 | 5.96E-38 |