Aniseed - Transcript Card

Transcript 'Phmamm.CG.MTP2014.S2...' >
Transcript 'KH2012:KH.C7.309.v3....'

Transcript Model

Transcript Id

KH2012:KH.C7.309.v3.A.SL1-1

Possible name(s)

LPP; TRIP6; ZYX

Gene model

KH2012:KH.C7.309

Location

KhC7 [1,499,893 / 1,504,318]

Sequences

Amino acid sequence

Length: 394

>KH.C7.309.v3.A.SL1-1
VTNTSPKAVSDVDKLTSQLLQGLDTGKRKKSDNIEDFNLPPPPNLDDFTFSPPSPIKSPD
LPPPPPSAVPNVYSPLPPPPAPKPSSQMSKAAPPPVLPKPSKSTPLTKESKRGVNSITIQ
LNKPSSAPSPSPPAPTPTTAPAPEQKSAPYVPPASTRPSVGPGSRAGIPKDIKKNSEEEL
DFLTNNLLKNMENPRDEEFYGYCERCNGVVEGENVGCTAMDRTFHITCFTCLKCHRNLHG
EQFYCVDKDPWCDKCYMNSLEKCTVCNETITDRILRATNKPYHPHCFQCVMCGKSLDGVP
FTVDEKNEVHCVEDYHKKYAPRCSVCQEAIMPEKGKEETVRIVALERSFHVDCYKCEKCA
VKLNSEKEGRGCFPLDGHIFCRDCNTKIIQHLSA

Nucleotide sequence

Length: 2,198

>KH2012:KH.C7.309.v3.A.SL1-1
GTTACTAACACCAGTCCAAAAGCTGTGTCCGACGTAGACAAACTTACAAGTCAACTTCTA
CAAGGCTTAGATACAGGAAAACGCAAGAAATCTGACAATATTGAAGACTTCAATCTTCCA
CCACCGCCCAACTTGGACGACTTCACATTCTCACCGCCTTCACCAATAAAGAGTCCGGAT
CTTCCCCCACCTCCTCCGTCCGCTGTTCCCAACGTCTACTCCCCTCTTCCCCCTCCTCCA
GCTCCCAAACCTTCCTCCCAGATGTCTAAAGCAGCTCCACCTCCCGTCCTCCCAAAACCA
TCAAAATCAACTCCACTGACGAAAGAGTCAAAGAGAGGCGTCAACAGCATCACTATTCAA
TTAAACAAACCGTCATCTGCTCCTTCTCCTTCTCCTCCTGCTCCCACTCCCACCACTGCT
CCTGCTCCAGAGCAAAAATCCGCTCCGTATGTTCCTCCAGCATCCACCAGACCTTCAGTT
GGTCCAGGATCAAGAGCTGGAATCCCAAAGGACATCAAGAAGAACTCCGAGGAAGAACTT
GACTTTCTCACCAATAATCTGCTGAAAAACATGGAGAACCCGAGGGATGAAGAATTCTAC
GGTTACTGCGAACGTTGTAACGGTGTGGTTGAAGGAGAAAACGTTGGTTGTACCGCCATG
GACCGTACCTTCCATATTACTTGCTTCACTTGCCTAAAATGCCATCGCAATCTGCACGGT
GAACAGTTTTATTGCGTTGATAAAGATCCGTGGTGTGATAAATGTTACATGAACTCGTTG
GAAAAATGCACAGTCTGCAACGAAACCATCACTGACAGGATTCTTCGTGCTACAAACAAG
CCGTACCACCCACATTGCTTTCAGTGCGTGATGTGCGGTAAGAGTCTTGACGGTGTCCCG
TTTACAGTGGATGAGAAGAATGAGGTGCATTGCGTAGAAGACTACCACAAGAAATACGCA
CCACGTTGCTCTGTCTGCCAGGAAGCTATTATGCCAGAGAAAGGCAAAGAAGAGACCGTA
CGCATCGTTGCCCTTGAACGAAGTTTCCACGTCGATTGCTACAAATGCGAGAAATGCGCG
GTCAAGTTGAATTCGGAGAAAGAGGGCCGTGGATGCTTTCCCCTTGACGGCCATATCTTC
TGTCGGGATTGCAACACCAAAATCATACAACACCTTTCTGCATAAGATCCATTTGTTAAC
GGCTTAACGTTATCAAAAACACCATGATTGCATTTTAACGCTTAAGTAGGCCGACAGGAT
TCATTCCATTTGATCTCATACTTTCTGCATTCCAAAATGTTTTTGTTTTAAGCTATTGTT
AACGAAAATATTCTTTGGCAGATTTTAATGAGTTAAAAAAGTTACCTGCACCTTTTGGTT
TTATAATTGATAATGTAGCGGGCACGATTAATATTGTAACTCAGTCTGTGTAAGCCACCG
TTAAAATGCCCCTTTTTATGGATTTGTAACACCTTTATGTACTTTATTTTTTGTGCTTTT
GCGAATTTTATATTTTACGCTGATTTTTTGCCGCCGCTTTTGGTCTCTTTTATAAGTTCA
AATAAGCACGGTTGATTTTTCGTCATATACGCGTTGTACATAAAGCGCCTGCATGAAAAG
TGAATTCTAGTTGCCTTTACACAGCATTACCGCATAGCACTAGCGCTGTAGTCGCTTATA
TATAATTGTACATTGCGACTGTCTGTAACTTCTAATGTCCCATATTAGCCAATGGCTATT
TACATTTCCTTTGTTAAGTCTGATAACTTTAACTAAACTTTGTTAAGGCCTCATTGTGCA
TTCAGCAACTCATTGTGCTTCAGTATTGTGATTATAAGTCCGAATTGCAAATATTTTCAT
ATTTTTACGAATATGTCTTACGGTTTTTACATAAGGTTGCATAGAGTGTAGATTTTAACA
CTTTTTATTGTTGTAGTACATCGCGTTAACGTCGTTGCACTAGCCCAATATTAACTTTGT
ACAATTGTCCTTGTGTATACGTAATTAGCTTTTGAGCCGCGCAATTACTTGATTGATTAT
CGTTCGAACTGGTTCTGGATATCAAGTTATTAAGCAGTTTCAACACCTTGAGCTGCGGTT
TTGTTATTTGATCTTTGTAAAATTTAATTTGTCGTTTACTTCCATTAATGTCGGTTGGCT
CATTATTGTCAATCGTGTAATAAAATAATGATTTTGAA

InterProScan

ProSiteProfiles	Znf_LIM (IPR001781) - T[201-260] 9.9 - T[261-321] 13.662 - T[322-391] 10.316
SMART	Znf_LIM (IPR001781) - T[202-255] 2.5E-7 - T[262-314] 8.4E-17 - T[322-384] 1.9E-14
Pfam	Znf_LIM (IPR001781) - T[203-258] 4.6E-11 - T[263-318] 1.6E-11 - T[323-385] 1.5E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRIP6_HUMAN	42.816 %	286	6.26E-93
LPP_HUMAN	51.625 %	296	4.46E-95
ZYX_HUMAN	46.691 %	248	7.05E-77