- Transcript 'KH2012:KH.C7.448.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.448.v1.A.nonSL2-1
Possible name(s)
POLR1A; POLR2A; POLR3A
Gene model
Location
KhC7 [2,330,028 / 2,346,730]
Amino acid sequence
Length: 1,748
>KH.C7.448.v1.A.nonSL2-1
ARRANRAHTCYRNKTMALTESSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVSEGG
RPKLLGLMDPRQGVVDRMSRCQTCAGNMTDCPGHFGHIELAKPVFHTGFLTKTIKVLRCV
CFYCSRLLVEKGNPKIRQIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRD
EDEPRKVGHGGCGRYQPKIRREGMELIAEWKHVNEDSQEKKIVVSAERVHEIFKRISDEE
SEILGMDPRFARPEWMINTVIPVPPLCVRPSVVMGGGSARSQDDLTHKLADIIKANQQLK
RNEQNGTASHIILEDVKLLQYHVATLSDNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIR
GNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIACNMTYPEIVTPFNIERMQELVRRGNN
QYPGAKYIIRDSGDRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMG
HKVKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQTMETRAEILQLAMVNRMIITPQSN
RPVMGIVQDTLTAVRKMTKRDSFIEKPDFMNLLMYLGDWDGYIPQPAILKPKPLWTGKQL
FSLIIPPGINCIRNHSTHPDGEDSGPYKHISPGDTRVLVENGILLSGIICKKSLGTSSGS
LCHVVALEKNADVCREFYSNIQTCVNNWLMIEGHSIGIGDTIADAQTYQDIQTQIRKAKQ
EVIEVIEKAHKEDLQPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVV
AGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGL
TPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEAVMVRYDGTIRQCNDFMIQLCY
GEDGLAGEKVEFQNLATLKPSHATFNKKFRFDYSKERFMRRCMNEDVVRMIQTDVTIQQE
LETEFDQLQQDRENIRAIFPTGDSKVVLPVNLSRLIWNAQKIFHIDLRSPSNLNPQRVIE
GVRDLSKKLVIVCGEDRLSKEAQSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGE
IETKFQQAQVHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVS
KKPRTPSLTIYLIGPATRDAQRCKDVLCRLEHATLRKVTANTAIYYDPDPMNTVIQEDQE
FVNVYYEMPDFDVTRISSWLLRIELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDN
AEKLVLRIRIMNSEEQKADEDTEEQTDKMEDDVFLRYIEANMLTDMTLQGIPQIAKVYMH
LPKEENKKRIVITKEGEFNAVQDWILETDGTALMRILSERDIDPVRTTSNDICEIFSVLG
IEAVRKALEREINHVISFDGSYVNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRC
SFEETVDILMEAASSAETDHMDGVSENIMLGQLVPGGTGCFGLLLDAEKCKYAMEIPTNI
GVVGASYSPASPSYSPTSPSYSPASPSYSPSNPKYSPASPSYSPASPEYSPSSPKYTPSS
PSYSPASPSYSPSSPNYSPSSPKYSPSSPSYSPASPSYSPTSPSYSPSSPGYSPSSPSYS
PSSPGASSPAYSGQAGYSPSSPSYSPTSPSYCPASPRYTPTSPTYTPGGDLSPASPSYSP
TSPGAESPASPSYSPTSPSYSPASPMYSPTSPGYSPLSPGYSPASPSYTPSTPGGGQHHG
QAKDSDED
Nucleotide sequence
Length: 5,626
>KH2012:KH.C7.448.v1.A.nonSL2-1
ATTTGAGCGCGGCGCGCGAATAGAGCGCACACGTGCTACAGAAACAAAACCATGGCACTC
ACAGAGTCGAGCGTCGATTTAAAACTTGTAAAAAGAGTCCAGTTTGGTATTCTCAGCCCA
GATGAAATCAAACGCATGTCAGTCACTGAAGGTGGGGTCCAATACCCTGAAGTGTCAGAA
GGGGGAAGACCAAAGCTGTTGGGGTTGATGGACCCACGTCAGGGGGTTGTTGATAGAATG
TCAAGGTGCCAAACATGCGCTGGCAACATGACTGACTGTCCTGGACACTTTGGTCACATA
GAACTTGCCAAACCTGTATTCCACACTGGCTTTCTAACGAAAACAATAAAAGTTCTTCGT
TGTGTTTGTTTCTACTGTTCGCGCTTGCTTGTTGAAAAGGGAAATCCAAAAATTCGTCAA
ATCATGGCTAAATCAAAGGGTCAACCCCGTAAGAGGTTAGCTCATGTCTACGAACTTTGT
AAAGGGAAGAATATTTGTGAAGGAGGTGAGGAGATGGATAATACATTTGATGTTCAGCAA
CGTGATGAAGATGAACCAAGAAAAGTGGGCCATGGTGGTTGTGGACGATACCAGCCAAAG
ATTAGACGAGAAGGAATGGAATTAATTGCTGAGTGGAAACATGTGAATGAAGACTCACAA
GAGAAAAAGATAGTTGTTTCTGCGGAACGTGTGCATGAGATATTTAAGAGAATATCTGAT
GAAGAATCTGAGATCCTCGGGATGGATCCTCGTTTCGCGCGACCTGAATGGATGATAAAC
ACTGTGATCCCCGTTCCTCCCCTTTGTGTTCGACCATCAGTTGTTATGGGGGGAGGGAGT
GCAAGGAGTCAGGATGATTTAACTCACAAACTGGCCGACATTATTAAAGCAAACCAACAA
TTGAAACGCAACGAACAAAATGGAACTGCCTCCCATATTATACTGGAAGATGTGAAACTA
CTGCAGTATCACGTGGCTACGCTATCTGACAACGATATGCCTGGAGTGCCTAAGGCTTTA
CAAAAATCGGGCCGTCCTTTAAAATCAATTAAACAACGATTAAAAGCAAAGGAAGGACGA
ATTCGTGGCAACTTGATGGGGAAGCGTGTTGACTTTTCTGCACGTACTGTCATCACACCT
GATCCTAATTTAAAAATTGATGAGGTTGGTGTTCCACGATCCATAGCTTGCAACATGACG
TACCCGGAGATTGTGACTCCTTTCAACATAGAGAGGATGCAAGAACTGGTTCGTCGTGGC
AACAACCAGTATCCGGGAGCAAAATACATCATCCGTGACAGCGGGGATCGAATTGATCTT
CGATATCATCCGAAACCTTCTGATCTTCATCTGCAAGTTGGATACAAGGTTGAACGTCAT
ATAAAAGATGGTGATGTCATAGTGTTTAACCGACAACCTACTTTGCATAAAATGTCAATG
ATGGGACACAAAGTTAAAGTCCTTCCCTGGTCAACCTTCAGAATGAATTTATCTGTGACC
ACCCCATATAACGCTGACTTCGATGGTGATGAAATGAACCTCCATGTTCCGCAAACCATG
GAAACGAGAGCCGAGATCCTCCAGTTGGCGATGGTGAACAGGATGATCATCACTCCTCAA
AGCAATCGACCCGTCATGGGAATCGTGCAAGATACGCTGACTGCTGTTCGTAAAATGACC
AAACGAGATTCATTTATTGAAAAGCCCGACTTCATGAACTTACTAATGTACCTTGGTGAC
TGGGATGGGTACATCCCCCAACCTGCAATCCTCAAACCAAAACCTCTATGGACGGGGAAA
CAACTCTTCTCGCTCATTATTCCTCCTGGGATTAATTGCATCCGGAACCACAGCACTCAT
CCTGATGGTGAGGACTCCGGACCTTACAAACACATATCGCCGGGAGATACAAGGGTTCTA
GTAGAGAATGGAATCTTACTGAGTGGCATCATATGTAAGAAGTCACTTGGTACCTCATCA
GGTTCACTGTGCCACGTTGTTGCTCTGGAAAAAAATGCTGATGTTTGCCGGGAGTTTTAC
AGCAATATACAGACATGCGTAAACAATTGGTTGATGATAGAAGGTCATTCAATCGGTATC
GGAGATACAATTGCAGATGCTCAGACTTACCAGGATATTCAAACTCAAATTAGGAAAGCC
AAGCAAGAAGTCATAGAGGTTATAGAGAAAGCACATAAGGAGGATTTACAACCGACACCT
GGTAACACATTGAGACAAACGTTTGAAAATCAAGTCAACAGAATTCTAAACGATGCTCGT
GACAAAACTGGTTCGTCAGCTCAAAAAAGTTTGTCTGATTTCAACAACTTTAAAGCCATG
GTGGTGGCTGGATCTAAGGGTTCAAAAATTAACATTTCTCAGGTCATTGCTGTTGTGGGG
CAACAGAACGTTGAAGGAAAACGAATTCCTTTTGGTTTCCGTCATAGAACACTTCCACAT
TTTATTAAGGATGATTACGGTCCAGAAGCTCGTGGTTTTGTTGAGAATTCATATCTTGCT
GGTTTGACTCCAACAGAGTTTTATTTTCACGCTATGGGAGGAAGGGAAGGTCTCATTGAC
ACTGCTGTCAAAACTGCAGAAACTGGATACATCCAGAGAAGATTAGTTAAAGCCATGGAA
GCGGTGATGGTGAGATACGACGGCACTATACGTCAGTGTAATGACTTCATGATACAACTG
TGTTATGGGGAAGATGGGTTGGCTGGCGAGAAAGTGGAATTTCAAAACCTCGCAACTCTT
AAACCAAGTCACGCCACTTTTAATAAGAAATTCCGATTTGATTATTCCAAAGAGCGTTTC
ATGCGGCGTTGCATGAATGAAGACGTTGTAAGAATGATACAAACTGATGTCACCATTCAA
CAAGAATTAGAAACTGAGTTCGATCAATTACAACAAGATCGTGAAAATATTCGAGCCATT
TTCCCAACTGGTGATAGCAAGGTTGTCTTGCCTGTGAACCTGAGTCGTTTAATCTGGAAC
GCACAAAAGATTTTCCACATTGATCTTCGTAGCCCGTCCAACCTCAACCCACAGCGTGTT
ATTGAGGGTGTGCGAGATTTAAGTAAGAAGTTGGTGATTGTGTGTGGTGAGGATAGATTG
AGTAAAGAAGCACAAAGCAACGCTACTCTGCTATTCAATGTTCATCTAAGGTCCACCCTA
TGTTCACGGAGAGTAGCCGATGAATTCCGTCTCTCAGCTGAAGCGTTTGAATGGATCCTC
GGTGAAATTGAGACCAAATTCCAACAAGCGCAAGTCCACCCTGGTGAAATGGTGGGAGCT
CTTGCTGCCCAATCCCTTGGTGAACCAGCCACACAGATGACCCTCAACACTTTCCATTAC
GCTGGTGTGTCAGCGAAGAATGTGACGCTTGGTGTGCCGAGGTTAAAGGAATTGATTAAC
GTCTCAAAGAAACCCAGGACCCCCTCACTCACAATATACTTGATTGGCCCAGCTACTCGG
GATGCACAGAGGTGTAAGGATGTTTTATGTCGATTGGAGCACGCCACGCTACGTAAAGTG
ACAGCCAACACTGCAATTTATTACGACCCTGACCCCATGAATACAGTCATTCAAGAAGAT
CAAGAATTCGTGAACGTTTATTATGAGATGCCAGATTTTGACGTCACAAGAATTTCTTCA
TGGCTGCTTAGGATTGAACTTGACAGAAAGAGAATGACAGATAAGAAACTGAGCATGGAA
CAAATTGCTGAAAAGATCAGCGCAGGGTTTGGAGACGACTTGAATTGCATTTTCAACGAC
GACAATGCTGAGAAACTCGTGCTTCGTATTCGGATCATGAACAGTGAGGAACAAAAAGCA
GATGAAGACACAGAAGAACAAACTGATAAAATGGAAGATGATGTCTTCCTGCGTTATATT
GAAGCTAATATGTTGACTGACATGACATTGCAGGGTATTCCACAAATTGCAAAAGTGTAC
ATGCATTTACCTAAAGAAGAAAACAAGAAGAGAATTGTGATAACAAAAGAAGGAGAGTTT
AATGCAGTCCAGGATTGGATCCTGGAGACAGATGGGACAGCTTTGATGAGGATTTTATCT
GAGAGAGATATTGATCCTGTCCGAACTACTTCTAATGATATTTGTGAGATCTTCTCTGTT
CTCGGAATAGAAGCGGTGAGAAAAGCTTTGGAGCGGGAAATCAACCACGTCATATCTTTC
GATGGTTCATATGTCAATTATCGTCATTTGGCGTTACTATGCGAGGTTATGACATCAAAG
GGACACTTGATGGCGATCACGAGGCACGGTATTAATCGTCAAGAGACAGGGGCGCTGATG
AGGTGTTCGTTTGAAGAGACGGTCGATATTTTAATGGAGGCTGCTTCTTCAGCAGAAACT
GACCACATGGATGGCGTGTCTGAAAACATTATGCTTGGCCAGTTAGTACCGGGTGGAACC
GGTTGTTTCGGGTTATTACTGGATGCTGAGAAGTGTAAATATGCAATGGAGATACCGACT
AATATTGGGGTTGTTGGAGCCTCTTATTCCCCCGCCAGCCCCAGTTACTCTCCAACTTCC
CCCAGTTACAGCCCTGCATCACCCAGCTATTCCCCATCAAACCCAAAATACTCCCCAGCA
AGTCCATCTTACAGCCCAGCATCACCAGAATACAGCCCATCGAGTCCAAAATATACACCA
TCATCACCATCTTACTCCCCTGCCTCCCCATCCTACAGTCCATCCTCACCAAACTATTCT
CCATCCAGTCCCAAGTACTCACCATCAAGTCCATCTTATTCACCCGCAAGCCCATCATAC
TCACCTACAAGTCCATCTTACTCCCCTTCGAGCCCTGGCTATTCCCCCTCCTCCCCAAGT
TATTCCCCATCTAGCCCAGGAGCATCAAGTCCTGCATACAGCGGCCAAGCTGGCTACTCT
CCAAGCAGCCCCTCTTACTCACCAACAAGTCCTTCATATTGCCCGGCCAGTCCCCGGTAC
ACTCCAACTAGCCCAACATACACCCCGGGAGGGGACCTCTCTCCGGCTTCACCCAGCTAT
AGCCCTACTTCCCCAGGTGCAGAGAGCCCAGCTAGTCCATCATACAGCCCAACAAGCCCT
TCTTACAGTCCTGCAAGTCCAATGTATTCTCCTACCAGCCCTGGTTATAGTCCTTTAAGT
CCAGGTTACAGTCCTGCATCGCCAAGTTATACACCAAGCACCCCAGGTGGTGGGCAACAC
CATGGTCAAGCTAAAGACAGCGACGAAGACTAACTACAACAATCTATGCACATTATGTTG
CTAGTGAAGTGGCCACGGTTCCAAAAACACTGCAGAAAAAAAACCCATAGAACAAAAAAA
CAGTGCAAAAAAAGACTTTCTAACGCGTGTTGTATTCTTTTCACCGAGTGTATATTCGTT
ATTTACTAATTTCTGTTAATATTCATTCAAATTCCCGCTTTCTGCCAAGTATAATTTTGT
ACAAGATACAGAATTGAGCTCTTCGTAAGTATAATTTTGTACAAGATACAGAATTGAGCT
CTTCGTGTTTCGCAGTGGGTAGGAACAACTGATATGTGTACAACATTTTCAGAAGTGGCT
CTAATGTTTTAACTTTAAAGTGAAAAATAAATGAAAATGAACACAA
| Pfam |
RNA_pol_Rpb1_1 (IPR007080) - T[26-363] 1.8E-106 |
| SMART |
RNA_pol_N (IPR006592) - T[254-558] 1.1E-197 |
| Pfam |
RNA_pol_asu (IPR000722) - T[365-530] 4.7E-75 |
| Pfam |
RNA_pol_Rpb1_3 (IPR007066) - T[534-701] 6.5E-49 |
| Gene3D |
Rpb1_funnel_sf (IPR038120) - T[696-841] 3.6E-54 |
| Pfam |
RNA_pol_Rpb1_4 (IPR007083) - T[727-832] 1.3E-36 |
| Pfam |
RNA_pol_Rpb1_5 (IPR007081) - T[839-1436] 1.4E-98 |
| Pfam |
RNA_pol_Rpb1_6 (IPR007075) - T[905-1088] 3.1E-68 |
| Pfam |
RNA_pol_Rpb1_7 (IPR007073) - T[1173-1309] 2.1E-55 |
| Gene3D |
RNA_pol_Rpb1_7_sf (IPR038593) - T[1173-1310] 3.5E-56 |
| ProSitePatterns |
RNA_pol_II_repeat_euk (IPR000684) - T[1514-1520] . - T[1584-1590] . - T[1598-1604] . - T[1644-1650] . - T[1658-1664] . - T[1693-1699] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPA1_HUMAN | 32.473 % | 333 | 1.25E-92 |
| RPC1_HUMAN | 37.045 % | 569 | 5.9E-176 |
| RPB1_HUMAN | 75.28 % | 2564 | 0 |