- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C5.42.v3.A...' >
- Transcript 'KH2012:KH.C5.42.v1.A...' >
- Transcript 'KH2012:KH.C7.448.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.448.v1.A.nonSL3-1
Possible name(s)
POLR1A; POLR2A; POLR3A
Gene model
Location
KhC7 [2,330,113 / 2,346,730]
Amino acid sequence
Length: 1,721
>KH.C7.448.v1.A.nonSL3-1
VKRVQFGILSPDEIKRMSVTEGGVQYPEVSEGGRPKLLGLMDPRQGVVDRMSRCQTCAGN
MTDCPGHFGHIELAKPVFHTGFLTKTIKVLRCVCFYCSRLLVEKGNPKIRQIMAKSKGQP
RKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKVGHGGCGRYQPKIRREGMELI
AEWKHVNEDSQEKKIVVSAERVHEIFKRISDEESEILGMDPRFARPEWMINTVIPVPPLC
VRPSVVMGGGSARSQDDLTHKLADIIKANQQLKRNEQNGTASHIILEDVKLLQYHVATLS
DNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKIDEV
GVPRSIACNMTYPEIVTPFNIERMQELVRRGNNQYPGAKYIIRDSGDRIDLRYHPKPSDL
HLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVKVLPWSTFRMNLSVTTPYNADFDG
DEMNLHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGIVQDTLTAVRKMTKRDSFIEKP
DFMNLLMYLGDWDGYIPQPAILKPKPLWTGKQLFSLIIPPGINCIRNHSTHPDGEDSGPY
KHISPGDTRVLVENGILLSGIICKKSLGTSSGSLCHVVALEKNADVCREFYSNIQTCVNN
WLMIEGHSIGIGDTIADAQTYQDIQTQIRKAKQEVIEVIEKAHKEDLQPTPGNTLRQTFE
NQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRI
PFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETG
YIQRRLVKAMEAVMVRYDGTIRQCNDFMIQLCYGEDGLAGEKVEFQNLATLKPSHATFNK
KFRFDYSKERFMRRCMNEDVVRMIQTDVTIQQELETEFDQLQQDRENIRAIFPTGDSKVV
LPVNLSRLIWNAQKIFHIDLRSPSNLNPQRVIEGVRDLSKKLVIVCGEDRLSKEAQSNAT
LLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEIETKFQQAQVHPGEMVGALAAQSLGEP
ATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPRTPSLTIYLIGPATRDAQRCKDVL
CRLEHATLRKVTANTAIYYDPDPMNTVIQEDQEFVNVYYEMPDFDVTRISSWLLRIELDR
KRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIMNSEEQKADEDTEEQTD
KMEDDVFLRYIEANMLTDMTLQGIPQIAKVYMHLPKEENKKRIVITKEGEFNAVQDWILE
TDGTALMRILSERDIDPVRTTSNDICEIFSVLGIEAVRKALEREINHVISFDGSYVNYRH
LALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEETVDILMEAASSAETDHMDGVSEN
IMLGQLVPGGTGCFGLLLDAEKCKYAMEIPTNIGVVGASYSPASPSYSPTSPSYSPASPS
YSPSNPKYSPASPSYSPASPEYSPSSPKYTPSSPSYSPASPSYSPSSPNYSPSSPKYSPS
SPSYSPASPSYSPTSPSYSPSSPGYSPSSPSYSPSSPGASSPAYSGQAGYSPSSPSYSPT
SPSYCPASPRYTPTSPTYTPGGDLSPASPSYSPTSPGAESPASPSYSPTSPSYSPASPMY
SPTSPGYSPLSPGYSPASPSYTPSTPGGGQHHGQAKDSDED
Nucleotide sequence
Length: 5,541
>KH2012:KH.C7.448.v1.A.nonSL3-1
TTGTAAAAAGAGTCCAGTTTGGTATTCTCAGCCCAGATGAAATCAAACGCATGTCAGTCA
CTGAAGGTGGGGTCCAATACCCTGAAGTGTCAGAAGGGGGAAGACCAAAGCTGTTGGGGT
TGATGGACCCACGTCAGGGGGTTGTTGATAGAATGTCAAGGTGCCAAACATGCGCTGGCA
ACATGACTGACTGTCCTGGACACTTTGGTCACATAGAACTTGCCAAACCTGTATTCCACA
CTGGCTTTCTAACGAAAACAATAAAAGTTCTTCGTTGTGTTTGTTTCTACTGTTCGCGCT
TGCTTGTTGAAAAGGGAAATCCAAAAATTCGTCAAATCATGGCTAAATCAAAGGGTCAAC
CCCGTAAGAGGTTAGCTCATGTCTACGAACTTTGTAAAGGGAAGAATATTTGTGAAGGAG
GTGAGGAGATGGATAATACATTTGATGTTCAGCAACGTGATGAAGATGAACCAAGAAAAG
TGGGCCATGGTGGTTGTGGACGATACCAGCCAAAGATTAGACGAGAAGGAATGGAATTAA
TTGCTGAGTGGAAACATGTGAATGAAGACTCACAAGAGAAAAAGATAGTTGTTTCTGCGG
AACGTGTGCATGAGATATTTAAGAGAATATCTGATGAAGAATCTGAGATCCTCGGGATGG
ATCCTCGTTTCGCGCGACCTGAATGGATGATAAACACTGTGATCCCCGTTCCTCCCCTTT
GTGTTCGACCATCAGTTGTTATGGGGGGAGGGAGTGCAAGGAGTCAGGATGATTTAACTC
ACAAACTGGCCGACATTATTAAAGCAAACCAACAATTGAAACGCAACGAACAAAATGGAA
CTGCCTCCCATATTATACTGGAAGATGTGAAACTACTGCAGTATCACGTGGCTACGCTAT
CTGACAACGATATGCCTGGAGTGCCTAAGGCTTTACAAAAATCGGGCCGTCCTTTAAAAT
CAATTAAACAACGATTAAAAGCAAAGGAAGGACGAATTCGTGGCAACTTGATGGGGAAGC
GTGTTGACTTTTCTGCACGTACTGTCATCACACCTGATCCTAATTTAAAAATTGATGAGG
TTGGTGTTCCACGATCCATAGCTTGCAACATGACGTACCCGGAGATTGTGACTCCTTTCA
ACATAGAGAGGATGCAAGAACTGGTTCGTCGTGGCAACAACCAGTATCCGGGAGCAAAAT
ACATCATCCGTGACAGCGGGGATCGAATTGATCTTCGATATCATCCGAAACCTTCTGATC
TTCATCTGCAAGTTGGATACAAGGTTGAACGTCATATAAAAGATGGTGATGTCATAGTGT
TTAACCGACAACCTACTTTGCATAAAATGTCAATGATGGGACACAAAGTTAAAGTCCTTC
CCTGGTCAACCTTCAGAATGAATTTATCTGTGACCACCCCATATAACGCTGACTTCGATG
GTGATGAAATGAACCTCCATGTTCCGCAAACCATGGAAACGAGAGCCGAGATCCTCCAGT
TGGCGATGGTGAACAGGATGATCATCACTCCTCAAAGCAATCGACCCGTCATGGGAATCG
TGCAAGATACGCTGACTGCTGTTCGTAAAATGACCAAACGAGATTCATTTATTGAAAAGC
CCGACTTCATGAACTTACTAATGTACCTTGGTGACTGGGATGGGTACATCCCCCAACCTG
CAATCCTCAAACCAAAACCTCTATGGACGGGGAAACAACTCTTCTCGCTCATTATTCCTC
CTGGGATTAATTGCATCCGGAACCACAGCACTCATCCTGATGGTGAGGACTCCGGACCTT
ACAAACACATATCGCCGGGAGATACAAGGGTTCTAGTAGAGAATGGAATCTTACTGAGTG
GCATCATATGTAAGAAGTCACTTGGTACCTCATCAGGTTCACTGTGCCACGTTGTTGCTC
TGGAAAAAAATGCTGATGTTTGCCGGGAGTTTTACAGCAATATACAGACATGCGTAAACA
ATTGGTTGATGATAGAAGGTCATTCAATCGGTATCGGAGATACAATTGCAGATGCTCAGA
CTTACCAGGATATTCAAACTCAAATTAGGAAAGCCAAGCAAGAAGTCATAGAGGTTATAG
AGAAAGCACATAAGGAGGATTTACAACCGACACCTGGTAACACATTGAGACAAACGTTTG
AAAATCAAGTCAACAGAATTCTAAACGATGCTCGTGACAAAACTGGTTCGTCAGCTCAAA
AAAGTTTGTCTGATTTCAACAACTTTAAAGCCATGGTGGTGGCTGGATCTAAGGGTTCAA
AAATTAACATTTCTCAGGTCATTGCTGTTGTGGGGCAACAGAACGTTGAAGGAAAACGAA
TTCCTTTTGGTTTCCGTCATAGAACACTTCCACATTTTATTAAGGATGATTACGGTCCAG
AAGCTCGTGGTTTTGTTGAGAATTCATATCTTGCTGGTTTGACTCCAACAGAGTTTTATT
TTCACGCTATGGGAGGAAGGGAAGGTCTCATTGACACTGCTGTCAAAACTGCAGAAACTG
GATACATCCAGAGAAGATTAGTTAAAGCCATGGAAGCGGTGATGGTGAGATACGACGGCA
CTATACGTCAGTGTAATGACTTCATGATACAACTGTGTTATGGGGAAGATGGGTTGGCTG
GCGAGAAAGTGGAATTTCAAAACCTCGCAACTCTTAAACCAAGTCACGCCACTTTTAATA
AGAAATTCCGATTTGATTATTCCAAAGAGCGTTTCATGCGGCGTTGCATGAATGAAGACG
TTGTAAGAATGATACAAACTGATGTCACCATTCAACAAGAATTAGAAACTGAGTTCGATC
AATTACAACAAGATCGTGAAAATATTCGAGCCATTTTCCCAACTGGTGATAGCAAGGTTG
TCTTGCCTGTGAACCTGAGTCGTTTAATCTGGAACGCACAAAAGATTTTCCACATTGATC
TTCGTAGCCCGTCCAACCTCAACCCACAGCGTGTTATTGAGGGTGTGCGAGATTTAAGTA
AGAAGTTGGTGATTGTGTGTGGTGAGGATAGATTGAGTAAAGAAGCACAAAGCAACGCTA
CTCTGCTATTCAATGTTCATCTAAGGTCCACCCTATGTTCACGGAGAGTAGCCGATGAAT
TCCGTCTCTCAGCTGAAGCGTTTGAATGGATCCTCGGTGAAATTGAGACCAAATTCCAAC
AAGCGCAAGTCCACCCTGGTGAAATGGTGGGAGCTCTTGCTGCCCAATCCCTTGGTGAAC
CAGCCACACAGATGACCCTCAACACTTTCCATTACGCTGGTGTGTCAGCGAAGAATGTGA
CGCTTGGTGTGCCGAGGTTAAAGGAATTGATTAACGTCTCAAAGAAACCCAGGACCCCCT
CACTCACAATATACTTGATTGGCCCAGCTACTCGGGATGCACAGAGGTGTAAGGATGTTT
TATGTCGATTGGAGCACGCCACGCTACGTAAAGTGACAGCCAACACTGCAATTTATTACG
ACCCTGACCCCATGAATACAGTCATTCAAGAAGATCAAGAATTCGTGAACGTTTATTATG
AGATGCCAGATTTTGACGTCACAAGAATTTCTTCATGGCTGCTTAGGATTGAACTTGACA
GAAAGAGAATGACAGATAAGAAACTGAGCATGGAACAAATTGCTGAAAAGATCAGCGCAG
GGTTTGGAGACGACTTGAATTGCATTTTCAACGACGACAATGCTGAGAAACTCGTGCTTC
GTATTCGGATCATGAACAGTGAGGAACAAAAAGCAGATGAAGACACAGAAGAACAAACTG
ATAAAATGGAAGATGATGTCTTCCTGCGTTATATTGAAGCTAATATGTTGACTGACATGA
CATTGCAGGGTATTCCACAAATTGCAAAAGTGTACATGCATTTACCTAAAGAAGAAAACA
AGAAGAGAATTGTGATAACAAAAGAAGGAGAGTTTAATGCAGTCCAGGATTGGATCCTGG
AGACAGATGGGACAGCTTTGATGAGGATTTTATCTGAGAGAGATATTGATCCTGTCCGAA
CTACTTCTAATGATATTTGTGAGATCTTCTCTGTTCTCGGAATAGAAGCGGTGAGAAAAG
CTTTGGAGCGGGAAATCAACCACGTCATATCTTTCGATGGTTCATATGTCAATTATCGTC
ATTTGGCGTTACTATGCGAGGTTATGACATCAAAGGGACACTTGATGGCGATCACGAGGC
ACGGTATTAATCGTCAAGAGACAGGGGCGCTGATGAGGTGTTCGTTTGAAGAGACGGTCG
ATATTTTAATGGAGGCTGCTTCTTCAGCAGAAACTGACCACATGGATGGCGTGTCTGAAA
ACATTATGCTTGGCCAGTTAGTACCGGGTGGAACCGGTTGTTTCGGGTTATTACTGGATG
CTGAGAAGTGTAAATATGCAATGGAGATACCGACTAATATTGGGGTTGTTGGAGCCTCTT
ATTCCCCCGCCAGCCCCAGTTACTCTCCAACTTCCCCCAGTTACAGCCCTGCATCACCCA
GCTATTCCCCATCAAACCCAAAATACTCCCCAGCAAGTCCATCTTACAGCCCAGCATCAC
CAGAATACAGCCCATCGAGTCCAAAATATACACCATCATCACCATCTTACTCCCCTGCCT
CCCCATCCTACAGTCCATCCTCACCAAACTATTCTCCATCCAGTCCCAAGTACTCACCAT
CAAGTCCATCTTATTCACCCGCAAGCCCATCATACTCACCTACAAGTCCATCTTACTCCC
CTTCGAGCCCTGGCTATTCCCCCTCCTCCCCAAGTTATTCCCCATCTAGCCCAGGAGCAT
CAAGTCCTGCATACAGCGGCCAAGCTGGCTACTCTCCAAGCAGCCCCTCTTACTCACCAA
CAAGTCCTTCATATTGCCCGGCCAGTCCCCGGTACACTCCAACTAGCCCAACATACACCC
CGGGAGGGGACCTCTCTCCGGCTTCACCCAGCTATAGCCCTACTTCCCCAGGTGCAGAGA
GCCCAGCTAGTCCATCATACAGCCCAACAAGCCCTTCTTACAGTCCTGCAAGTCCAATGT
ATTCTCCTACCAGCCCTGGTTATAGTCCTTTAAGTCCAGGTTACAGTCCTGCATCGCCAA
GTTATACACCAAGCACCCCAGGTGGTGGGCAACACCATGGTCAAGCTAAAGACAGCGACG
AAGACTAACTACAACAATCTATGCACATTATGTTGCTAGTGAAGTGGCCACGGTTCCAAA
AACACTGCAGAAAAAAAACCCATAGAACAAAAAAACAGTGCAAAAAAAGACTTTCTAACG
CGTGTTGTATTCTTTTCACCGAGTGTATATTCGTTATTTACTAATTTCTGTTAATATTCA
TTCAAATTCCCGCTTTCTGCCAAGTATAATTTTGTACAAGATACAGAATTGAGCTCTTCG
TAAGTATAATTTTGTACAAGATACAGAATTGAGCTCTTCGTGTTTCGCAGTGGGTAGGAA
CAACTGATATGTGTACAACATTTTCAGAAGTGGCTCTAATGTTTTAACTTTAAAGTGAAA
AATAAATGAAAATGAACACAA
| Pfam |
RNA_pol_Rpb1_1 (IPR007080) - T[1-336] 6.6E-106 |
| SMART |
RNA_pol_N (IPR006592) - T[227-531] 1.1E-197 |
| Pfam |
RNA_pol_asu (IPR000722) - T[338-503] 4.6E-75 |
| Pfam |
RNA_pol_Rpb1_3 (IPR007066) - T[507-674] 6.4E-49 |
| Gene3D |
Rpb1_funnel_sf (IPR038120) - T[669-814] 3.6E-54 |
| Pfam |
RNA_pol_Rpb1_4 (IPR007083) - T[700-805] 1.3E-36 |
| Pfam |
RNA_pol_Rpb1_5 (IPR007081) - T[812-1409] 1.3E-98 |
| Pfam |
RNA_pol_Rpb1_6 (IPR007075) - T[878-1061] 3.0E-68 |
| Gene3D |
RNA_pol_Rpb1_7_sf (IPR038593) - T[1146-1283] 3.4E-56 |
| Pfam |
RNA_pol_Rpb1_7 (IPR007073) - T[1146-1282] 2.0E-55 |
| ProSitePatterns |
RNA_pol_II_repeat_euk (IPR000684) - T[1487-1493] . - T[1557-1563] . - T[1571-1577] . - T[1617-1623] . - T[1631-1637] . - T[1666-1672] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPA1_HUMAN | 32.473 % | 333 | 9.84E-93 |
| RPC1_HUMAN | 37.017 % | 568 | 1.17E-175 |
| RPB1_HUMAN | 75.532 % | 2558 | 0 |