- Transcript 'KH2012:KH.C2.141.v2....' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C7.159.v1....' >
- Transcript 'KH2012:KH.C10.558.v1...' >
- Transcript 'KH2012:KH.C7.448.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.448.v1.A.nonSL4-1
Possible name(s)
POLR1A; POLR2A; POLR3A
Gene model
Location
KhC7 [2,330,093 / 2,346,730]
Amino acid sequence
Length: 1,728
>KH.C7.448.v1.A.nonSL4-1
SSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVSEGGRPKLLGLMDPRQGVVDRMSR
CQTCAGNMTDCPGHFGHIELAKPVFHTGFLTKTIKVLRCVCFYCSRLLVEKGNPKIRQIM
AKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKVGHGGCGRYQPKIR
REGMELIAEWKHVNEDSQEKKIVVSAERVHEIFKRISDEESEILGMDPRFARPEWMINTV
IPVPPLCVRPSVVMGGGSARSQDDLTHKLADIIKANQQLKRNEQNGTASHIILEDVKLLQ
YHVATLSDNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPDP
NLKIDEVGVPRSIACNMTYPEIVTPFNIERMQELVRRGNNQYPGAKYIIRDSGDRIDLRY
HPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVKVLPWSTFRMNLSVTTP
YNADFDGDEMNLHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGIVQDTLTAVRKMTKR
DSFIEKPDFMNLLMYLGDWDGYIPQPAILKPKPLWTGKQLFSLIIPPGINCIRNHSTHPD
GEDSGPYKHISPGDTRVLVENGILLSGIICKKSLGTSSGSLCHVVALEKNADVCREFYSN
IQTCVNNWLMIEGHSIGIGDTIADAQTYQDIQTQIRKAKQEVIEVIEKAHKEDLQPTPGN
TLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINISQVIAVVGQQ
NVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMGGREGLIDTA
VKTAETGYIQRRLVKAMEAVMVRYDGTIRQCNDFMIQLCYGEDGLAGEKVEFQNLATLKP
SHATFNKKFRFDYSKERFMRRCMNEDVVRMIQTDVTIQQELETEFDQLQQDRENIRAIFP
TGDSKVVLPVNLSRLIWNAQKIFHIDLRSPSNLNPQRVIEGVRDLSKKLVIVCGEDRLSK
EAQSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEIETKFQQAQVHPGEMVGALA
AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPRTPSLTIYLIGPATRDA
QRCKDVLCRLEHATLRKVTANTAIYYDPDPMNTVIQEDQEFVNVYYEMPDFDVTRISSWL
LRIELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIMNSEEQKADE
DTEEQTDKMEDDVFLRYIEANMLTDMTLQGIPQIAKVYMHLPKEENKKRIVITKEGEFNA
VQDWILETDGTALMRILSERDIDPVRTTSNDICEIFSVLGIEAVRKALEREINHVISFDG
SYVNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEETVDILMEAASSAETDH
MDGVSENIMLGQLVPGGTGCFGLLLDAEKCKYAMEIPTNIGVVGASYSPASPSYSPTSPS
YSPASPSYSPSNPKYSPASPSYSPASPEYSPSSPKYTPSSPSYSPASPSYSPSSPNYSPS
SPKYSPSSPSYSPASPSYSPTSPSYSPSSPGYSPSSPSYSPSSPGASSPAYSGQAGYSPS
SPSYSPTSPSYCPASPRYTPTSPTYTPGGDLSPASPSYSPTSPGAESPASPSYSPTSPSY
SPASPMYSPTSPGYSPLSPGYSPASPSYTPSTPGGGQHHGQAKDSDED
Nucleotide sequence
Length: 5,561
>KH2012:KH.C7.448.v1.A.nonSL4-1
GTCGAGCGTCGATTTAAAACTTGTAAAAAGAGTCCAGTTTGGTATTCTCAGCCCAGATGA
AATCAAACGCATGTCAGTCACTGAAGGTGGGGTCCAATACCCTGAAGTGTCAGAAGGGGG
AAGACCAAAGCTGTTGGGGTTGATGGACCCACGTCAGGGGGTTGTTGATAGAATGTCAAG
GTGCCAAACATGCGCTGGCAACATGACTGACTGTCCTGGACACTTTGGTCACATAGAACT
TGCCAAACCTGTATTCCACACTGGCTTTCTAACGAAAACAATAAAAGTTCTTCGTTGTGT
TTGTTTCTACTGTTCGCGCTTGCTTGTTGAAAAGGGAAATCCAAAAATTCGTCAAATCAT
GGCTAAATCAAAGGGTCAACCCCGTAAGAGGTTAGCTCATGTCTACGAACTTTGTAAAGG
GAAGAATATTTGTGAAGGAGGTGAGGAGATGGATAATACATTTGATGTTCAGCAACGTGA
TGAAGATGAACCAAGAAAAGTGGGCCATGGTGGTTGTGGACGATACCAGCCAAAGATTAG
ACGAGAAGGAATGGAATTAATTGCTGAGTGGAAACATGTGAATGAAGACTCACAAGAGAA
AAAGATAGTTGTTTCTGCGGAACGTGTGCATGAGATATTTAAGAGAATATCTGATGAAGA
ATCTGAGATCCTCGGGATGGATCCTCGTTTCGCGCGACCTGAATGGATGATAAACACTGT
GATCCCCGTTCCTCCCCTTTGTGTTCGACCATCAGTTGTTATGGGGGGAGGGAGTGCAAG
GAGTCAGGATGATTTAACTCACAAACTGGCCGACATTATTAAAGCAAACCAACAATTGAA
ACGCAACGAACAAAATGGAACTGCCTCCCATATTATACTGGAAGATGTGAAACTACTGCA
GTATCACGTGGCTACGCTATCTGACAACGATATGCCTGGAGTGCCTAAGGCTTTACAAAA
ATCGGGCCGTCCTTTAAAATCAATTAAACAACGATTAAAAGCAAAGGAAGGACGAATTCG
TGGCAACTTGATGGGGAAGCGTGTTGACTTTTCTGCACGTACTGTCATCACACCTGATCC
TAATTTAAAAATTGATGAGGTTGGTGTTCCACGATCCATAGCTTGCAACATGACGTACCC
GGAGATTGTGACTCCTTTCAACATAGAGAGGATGCAAGAACTGGTTCGTCGTGGCAACAA
CCAGTATCCGGGAGCAAAATACATCATCCGTGACAGCGGGGATCGAATTGATCTTCGATA
TCATCCGAAACCTTCTGATCTTCATCTGCAAGTTGGATACAAGGTTGAACGTCATATAAA
AGATGGTGATGTCATAGTGTTTAACCGACAACCTACTTTGCATAAAATGTCAATGATGGG
ACACAAAGTTAAAGTCCTTCCCTGGTCAACCTTCAGAATGAATTTATCTGTGACCACCCC
ATATAACGCTGACTTCGATGGTGATGAAATGAACCTCCATGTTCCGCAAACCATGGAAAC
GAGAGCCGAGATCCTCCAGTTGGCGATGGTGAACAGGATGATCATCACTCCTCAAAGCAA
TCGACCCGTCATGGGAATCGTGCAAGATACGCTGACTGCTGTTCGTAAAATGACCAAACG
AGATTCATTTATTGAAAAGCCCGACTTCATGAACTTACTAATGTACCTTGGTGACTGGGA
TGGGTACATCCCCCAACCTGCAATCCTCAAACCAAAACCTCTATGGACGGGGAAACAACT
CTTCTCGCTCATTATTCCTCCTGGGATTAATTGCATCCGGAACCACAGCACTCATCCTGA
TGGTGAGGACTCCGGACCTTACAAACACATATCGCCGGGAGATACAAGGGTTCTAGTAGA
GAATGGAATCTTACTGAGTGGCATCATATGTAAGAAGTCACTTGGTACCTCATCAGGTTC
ACTGTGCCACGTTGTTGCTCTGGAAAAAAATGCTGATGTTTGCCGGGAGTTTTACAGCAA
TATACAGACATGCGTAAACAATTGGTTGATGATAGAAGGTCATTCAATCGGTATCGGAGA
TACAATTGCAGATGCTCAGACTTACCAGGATATTCAAACTCAAATTAGGAAAGCCAAGCA
AGAAGTCATAGAGGTTATAGAGAAAGCACATAAGGAGGATTTACAACCGACACCTGGTAA
CACATTGAGACAAACGTTTGAAAATCAAGTCAACAGAATTCTAAACGATGCTCGTGACAA
AACTGGTTCGTCAGCTCAAAAAAGTTTGTCTGATTTCAACAACTTTAAAGCCATGGTGGT
GGCTGGATCTAAGGGTTCAAAAATTAACATTTCTCAGGTCATTGCTGTTGTGGGGCAACA
GAACGTTGAAGGAAAACGAATTCCTTTTGGTTTCCGTCATAGAACACTTCCACATTTTAT
TAAGGATGATTACGGTCCAGAAGCTCGTGGTTTTGTTGAGAATTCATATCTTGCTGGTTT
GACTCCAACAGAGTTTTATTTTCACGCTATGGGAGGAAGGGAAGGTCTCATTGACACTGC
TGTCAAAACTGCAGAAACTGGATACATCCAGAGAAGATTAGTTAAAGCCATGGAAGCGGT
GATGGTGAGATACGACGGCACTATACGTCAGTGTAATGACTTCATGATACAACTGTGTTA
TGGGGAAGATGGGTTGGCTGGCGAGAAAGTGGAATTTCAAAACCTCGCAACTCTTAAACC
AAGTCACGCCACTTTTAATAAGAAATTCCGATTTGATTATTCCAAAGAGCGTTTCATGCG
GCGTTGCATGAATGAAGACGTTGTAAGAATGATACAAACTGATGTCACCATTCAACAAGA
ATTAGAAACTGAGTTCGATCAATTACAACAAGATCGTGAAAATATTCGAGCCATTTTCCC
AACTGGTGATAGCAAGGTTGTCTTGCCTGTGAACCTGAGTCGTTTAATCTGGAACGCACA
AAAGATTTTCCACATTGATCTTCGTAGCCCGTCCAACCTCAACCCACAGCGTGTTATTGA
GGGTGTGCGAGATTTAAGTAAGAAGTTGGTGATTGTGTGTGGTGAGGATAGATTGAGTAA
AGAAGCACAAAGCAACGCTACTCTGCTATTCAATGTTCATCTAAGGTCCACCCTATGTTC
ACGGAGAGTAGCCGATGAATTCCGTCTCTCAGCTGAAGCGTTTGAATGGATCCTCGGTGA
AATTGAGACCAAATTCCAACAAGCGCAAGTCCACCCTGGTGAAATGGTGGGAGCTCTTGC
TGCCCAATCCCTTGGTGAACCAGCCACACAGATGACCCTCAACACTTTCCATTACGCTGG
TGTGTCAGCGAAGAATGTGACGCTTGGTGTGCCGAGGTTAAAGGAATTGATTAACGTCTC
AAAGAAACCCAGGACCCCCTCACTCACAATATACTTGATTGGCCCAGCTACTCGGGATGC
ACAGAGGTGTAAGGATGTTTTATGTCGATTGGAGCACGCCACGCTACGTAAAGTGACAGC
CAACACTGCAATTTATTACGACCCTGACCCCATGAATACAGTCATTCAAGAAGATCAAGA
ATTCGTGAACGTTTATTATGAGATGCCAGATTTTGACGTCACAAGAATTTCTTCATGGCT
GCTTAGGATTGAACTTGACAGAAAGAGAATGACAGATAAGAAACTGAGCATGGAACAAAT
TGCTGAAAAGATCAGCGCAGGGTTTGGAGACGACTTGAATTGCATTTTCAACGACGACAA
TGCTGAGAAACTCGTGCTTCGTATTCGGATCATGAACAGTGAGGAACAAAAAGCAGATGA
AGACACAGAAGAACAAACTGATAAAATGGAAGATGATGTCTTCCTGCGTTATATTGAAGC
TAATATGTTGACTGACATGACATTGCAGGGTATTCCACAAATTGCAAAAGTGTACATGCA
TTTACCTAAAGAAGAAAACAAGAAGAGAATTGTGATAACAAAAGAAGGAGAGTTTAATGC
AGTCCAGGATTGGATCCTGGAGACAGATGGGACAGCTTTGATGAGGATTTTATCTGAGAG
AGATATTGATCCTGTCCGAACTACTTCTAATGATATTTGTGAGATCTTCTCTGTTCTCGG
AATAGAAGCGGTGAGAAAAGCTTTGGAGCGGGAAATCAACCACGTCATATCTTTCGATGG
TTCATATGTCAATTATCGTCATTTGGCGTTACTATGCGAGGTTATGACATCAAAGGGACA
CTTGATGGCGATCACGAGGCACGGTATTAATCGTCAAGAGACAGGGGCGCTGATGAGGTG
TTCGTTTGAAGAGACGGTCGATATTTTAATGGAGGCTGCTTCTTCAGCAGAAACTGACCA
CATGGATGGCGTGTCTGAAAACATTATGCTTGGCCAGTTAGTACCGGGTGGAACCGGTTG
TTTCGGGTTATTACTGGATGCTGAGAAGTGTAAATATGCAATGGAGATACCGACTAATAT
TGGGGTTGTTGGAGCCTCTTATTCCCCCGCCAGCCCCAGTTACTCTCCAACTTCCCCCAG
TTACAGCCCTGCATCACCCAGCTATTCCCCATCAAACCCAAAATACTCCCCAGCAAGTCC
ATCTTACAGCCCAGCATCACCAGAATACAGCCCATCGAGTCCAAAATATACACCATCATC
ACCATCTTACTCCCCTGCCTCCCCATCCTACAGTCCATCCTCACCAAACTATTCTCCATC
CAGTCCCAAGTACTCACCATCAAGTCCATCTTATTCACCCGCAAGCCCATCATACTCACC
TACAAGTCCATCTTACTCCCCTTCGAGCCCTGGCTATTCCCCCTCCTCCCCAAGTTATTC
CCCATCTAGCCCAGGAGCATCAAGTCCTGCATACAGCGGCCAAGCTGGCTACTCTCCAAG
CAGCCCCTCTTACTCACCAACAAGTCCTTCATATTGCCCGGCCAGTCCCCGGTACACTCC
AACTAGCCCAACATACACCCCGGGAGGGGACCTCTCTCCGGCTTCACCCAGCTATAGCCC
TACTTCCCCAGGTGCAGAGAGCCCAGCTAGTCCATCATACAGCCCAACAAGCCCTTCTTA
CAGTCCTGCAAGTCCAATGTATTCTCCTACCAGCCCTGGTTATAGTCCTTTAAGTCCAGG
TTACAGTCCTGCATCGCCAAGTTATACACCAAGCACCCCAGGTGGTGGGCAACACCATGG
TCAAGCTAAAGACAGCGACGAAGACTAACTACAACAATCTATGCACATTATGTTGCTAGT
GAAGTGGCCACGGTTCCAAAAACACTGCAGAAAAAAAACCCATAGAACAAAAAAACAGTG
CAAAAAAAGACTTTCTAACGCGTGTTGTATTCTTTTCACCGAGTGTATATTCGTTATTTA
CTAATTTCTGTTAATATTCATTCAAATTCCCGCTTTCTGCCAAGTATAATTTTGTACAAG
ATACAGAATTGAGCTCTTCGTAAGTATAATTTTGTACAAGATACAGAATTGAGCTCTTCG
TGTTTCGCAGTGGGTAGGAACAACTGATATGTGTACAACATTTTCAGAAGTGGCTCTAAT
GTTTTAACTTTAAAGTGAAAAATAAATGAAAATGAACACAA
| Pfam |
RNA_pol_Rpb1_1 (IPR007080) - T[6-343] 1.7E-106 |
| SMART |
RNA_pol_N (IPR006592) - T[234-538] 1.1E-197 |
| Pfam |
RNA_pol_asu (IPR000722) - T[345-510] 4.6E-75 |
| Pfam |
RNA_pol_Rpb1_3 (IPR007066) - T[514-681] 6.4E-49 |
| Gene3D |
Rpb1_funnel_sf (IPR038120) - T[676-821] 3.6E-54 |
| Pfam |
RNA_pol_Rpb1_4 (IPR007083) - T[707-812] 1.3E-36 |
| Pfam |
RNA_pol_Rpb1_5 (IPR007081) - T[819-1416] 1.3E-98 |
| Pfam |
RNA_pol_Rpb1_6 (IPR007075) - T[885-1068] 3.1E-68 |
| Pfam |
RNA_pol_Rpb1_7 (IPR007073) - T[1153-1289] 2.0E-55 |
| Gene3D |
RNA_pol_Rpb1_7_sf (IPR038593) - T[1153-1290] 3.4E-56 |
| ProSitePatterns |
RNA_pol_II_repeat_euk (IPR000684) - T[1494-1500] . - T[1564-1570] . - T[1578-1584] . - T[1624-1630] . - T[1638-1644] . - T[1673-1679] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPA1_HUMAN | 32.523 % | 333 | 1.03E-92 |
| RPC1_HUMAN | 37.045 % | 569 | 7.29E-176 |
| RPB1_HUMAN | 75.327 % | 2560 | 0 |